TCONS_00029804 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029804
Unique NameTCONS_00029804
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029804 ID=TCONS_00029804|Name=TCONS_00029804|organism=Clytia hemisphaerica|type=transcript|length=429bp
TAAGGTTCTGATATATGTTtgtatatcagagtttagatgcaaatggtttg
ttttgatatatatcCGGACTCTTGGGACAGCCTCACTTTCATGCGTATTT
AAGGCCTCAGTTCTTCTACATGgacctttttcagttcttcatttgCCTAG
TGCTGACTGCTGTATTTTTGCTCCACCACCCTCCCCAGCATCTTTTGGga
agcttcttttttttcttttttatgatcaGCGTATATGGTTTTAGTGATGC
CCTTTTTTGTCAATGTCAGTTTATATTTCAGTATTTACTCGTGTTTTTGT
TATTAGTTTGTATTTTTATGCTGTATTATTTCNTTCATTCACTCCCAGCT
CAACCTTCTGGATAGCAAGCAGGCTTCTTTTTGGGCTTTGTGTCTTGTTT
CCTTCTTTGGGCTTTTCCGGAAGAGACAC
Run BLAST on NCBI

transcript from alignment at sc0000770:103747..104175

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029804 ID=TCONS_00029804|Name=TCONS_00029804|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at sc0000770:103747..104175 (Clytia hemisphaerica)
GTGTCTCTTCCGGAAAAGCCCAAAGAAGGAAACAAGACACAAAGCCCAAA
AAGAAGCCTGCTTGCTATCCAGAAGGTTGAGCTGGGAGTGAATGAANGAA
ATAATACAGCATAAAAATACAAACTAATAACAAAAACACGAGTAAATACT
GAAATATAAACTGACATTGACAAAAAAGGGCATCACTAAAACCATATACG
CtgatcataaaaaagaaaaaaaagaagcttcCCAAAAGATGCTGGGGAGG
GTGGTGGAGCAAAAATACAGCAGTCAGCACTAGGcaaatgaagaactgaa
aaaggtcCATGTAGAAGAACTGAGGCCTTAAATACGCATGAAAGTGAGGC
TGTCCCAAGAGTCCGgatatatatcaaaacaaaccatttgcatctaaact
ctgatatacaAACATATATCAGAACCTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017030XLOC_017030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029804-exon-sc0000770-1491911889:103747..104175TCONS_00029804-exon-sc0000770-1491911889:103747..104175Clytia hemisphaericaexon
TCONS_00029804-exon-sc0000770-1510915933:103747..104175TCONS_00029804-exon-sc0000770-1510915933:103747..104175Clytia hemisphaericaexon
TCONS_00029804-exon-sc0000770-1575043694:103747..104175TCONS_00029804-exon-sc0000770-1575043694:103747..104175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000770supercontigsc0000770:103747..104175 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.387819	0.157256	0.456516	0.946802	0.676046	0.196355	0.682797	0.79632	1.82094	1.08409	1.89964	0.683973	1.08684	0.939229	0.0915702	0.196538	0.462702	0.372245	0	0.538154	0.155918	0.912614	0	0.168101	1.21704	1.13218	0.221123	0.409131	0.178989	0.182361
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029804 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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