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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029800 ID=TCONS_00029800|Name=TCONS_00029800|organism=Clytia hemisphaerica|type=transcript|length=1178bp
CTCAGGAACTGGTGATCACCTGTTTGACAAATAACTCCATCGTTTTCAAT
AGCTTGATCAAGTTTTTTCTCTAAATTAGCAATCTTCTTTTTGAGTTGTT
TGTTCTCAACTTGTAAATTTGTTGACTTCTGTCGAAGTTCGTTGTTTGTC
AAGTAAATGTTCGGTTTGAACTTAGATGGGAGCTCTGGAGAATTCAATTT
GCGGTATCTAATTTTATTTAATGTGTTCCTTCGAAATTCACTGCAGCGTT
CACATCTGGTTGAAGAAGATGATACAACAAGGGAGCAATCTACTGAACGG
ATAGTTGATGAAGTGTCTTTTAGTTGCTGGAAATTATTGTTTTCTATCAA
TGCTTTAATACTGCCATCAATACCTTTAAACTCAGATATATTTGACAATC
TATCATCAATAATGTCTTGAAAGTCATTATTACCAACACATAGTACTGTT
TCTTTAATACAattaaaaaattcttccaagtTTTTGTTGTTCAACAATgg
aaaatctttataaatttggtcattttcatccaaatttCGTCCATTTATTT
TAAGAACCCATGTGAGATCAGCCTTGATCTGAACAACTTTAGTTAGATGA
ATTATTAATTTGGATTCGTTCAAATCTAACACAGCTACGACAAGTTTAAT
TTTGTCAATCAACACAGTAACAAAGCCAACTTTATTTGCTACTGAATTGA
CATATTGCAATGGTAAAGAGTCTTCCTTTATGACTGAAAATGGTGTGACA
GGTATAACTTTCTTGGCACATATTGGACACTTTTCTTCGGTATGGTTTGG
AAATTCTGCAACATTGTCAGGTTCGGCTCTATATATTCCTTGATGTACTC
GTTCTACCTTCCTCCGACAACTTTCACAGATTTTTGTAGAAACACTGCTG
GGTTCGTCATTGTCCACGTCGTGAGAaaataacaattcaatttcCTTTTT
AAAGTCAGCAACATTacgagattttgattttatcttGCCACAACAAAGAC
GACAATATAAATCTTTATTATTTAGGTGAACATCCATGATGAGACAATGC
AATAATGGATACTTTTTTCATTTATATATAacattcaattttattttgca
aTAGTATTATTCATTTCTAAAGGAAAACATTCATGTTTAAATAAATACTG
Cctgttttattatttatttcaaactctt Run BLAST on NCBI protein sequence of TCONS_00029800-protein >TCONS_00029800-protein ID=TCONS_00029800-protein|Name=TCONS_00029800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=345bp
MDVHLNNKDLYCRLCCGKIKSKSRNVADFKKEIELLFSHDVDNDEPSSVS
TKICESCRRKVERVHQGIYRAEPDNVAEFPNHTEEKCPICAKKVIPVTPF
SVIKEDSLPLQYVNSVANKVGFVTVLIDKIKLVVAVLDLNESKLIIHLTK
VVQIKADLTWVLKINGRNLDENDQIYKDFPLLNNKNLEEFFNCIKETVLC
VGNNDFQDIIDDRLSNISEFKGIDGSIKALIENNNFQQLKDTSSTIRSVD
CSLVVSSSSTRCERCSEFRRNTLNKIRYRKLNSPELPSKFKPNIYLTNNE
LRQKSTNLQVENKQLKKKIANLEKKLDQAIENDGVICQTGDHQFL Run BLAST on NCBI transcript from alignment at sc0000770:85950..87127 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029800 ID=TCONS_00029800|Name=TCONS_00029800|organism=Clytia hemisphaerica|type=transcript|length=1178bp|location=Sequence derived from alignment at sc0000770:85950..87127 (Clytia hemisphaerica)
aagagtttgaaataaataataaaacagGCAGTATTTATTTAAACATGAAT
GTTTTCCTTTAGAAATGAATAATACTAttgcaaaataaaattgaatgtTA
TATATAAATGAAAAAAGTATCCATTATTGCATTGTCTCATCATGGATGTT
CACCTAAATAATAAAGATTTATATTGTCGTCTTTGTTGTGGCaagataaa
atcaaaatctcgtAATGTTGCTGACTTTAAAAAGgaaattgaattgttat
ttTCTCACGACGTGGACAATGACGAACCCAGCAGTGTTTCTACAAAAATC
TGTGAAAGTTGTCGGAGGAAGGTAGAACGAGTACATCAAGGAATATATAG
AGCCGAACCTGACAATGTTGCAGAATTTCCAAACCATACCGAAGAAAAGT
GTCCAATATGTGCCAAGAAAGTTATACCTGTCACACCATTTTCAGTCATA
AAGGAAGACTCTTTACCATTGCAATATGTCAATTCAGTAGCAAATAAAGT
TGGCTTTGTTACTGTGTTGATTGACAAAATTAAACTTGTCGTAGCTGTGT
TAGATTTGAACGAATCCAAATTAATAATTCATCTAACTAAAGTTGTTCAG
ATCAAGGCTGATCTCACATGGGTTCTTAAAATAAATGGACGaaatttgga
tgaaaatgaccaaatttataaagattttccATTGTTGAACAACAAAAact
tggaagaattttttaatTGTATTAAAGAAACAGTACTATGTGTTGGTAAT
AATGACTTTCAAGACATTATTGATGATAGATTGTCAAATATATCTGAGTT
TAAAGGTATTGATGGCAGTATTAAAGCATTGATAGAAAACAATAATTTCC
AGCAACTAAAAGACACTTCATCAACTATCCGTTCAGTAGATTGCTCCCTT
GTTGTATCATCTTCTTCAACCAGATGTGAACGCTGCAGTGAATTTCGAAG
GAACACATTAAATAAAATTAGATACCGCAAATTGAATTCTCCAGAGCTCC
CATCTAAGTTCAAACCGAACATTTACTTGACAAACAACGAACTTCGACAG
AAGTCAACAAATTTACAAGTTGAGAACAAACAACTCAAAAAGAAGATTGC
TAATTTAGAGAAAAAACTTGATCAAGCTATTGAAAACGATGGAGTTATTT
GTCAAACAGGTGATCACCAGTTCCTGAG Coding sequence (CDS) from alignment at sc0000770:85950..87127 >TCONS_00029800 ID=TCONS_00029800|Name=TCONS_00029800|organism=Clytia hemisphaerica|type=CDS|length=1035bp|location=Sequence derived from alignment at sc0000770:85950..87127 (Clytia hemisphaerica)
ATGGATGTTCACCTAAATAATAAAGATTTATATTGTCGTCTTTGTTGTGG
CaagataaaatcaaaatctcgtAATGTTGCTGACTTTAAAAAGgaaattg
aattgttatttTCTCACGACGTGGACAATGACGAACCCAGCAGTGTTTCT
ACAAAAATCTGTGAAAGTTGTCGGAGGAAGGTAGAACGAGTACATCAAGG
AATATATAGAGCCGAACCTGACAATGTTGCAGAATTTCCAAACCATACCG
AAGAAAAGTGTCCAATATGTGCCAAGAAAGTTATACCTGTCACACCATTT
TCAGTCATAAAGGAAGACTCTTTACCATTGCAATATGTCAATTCAGTAGC
AAATAAAGTTGGCTTTGTTACTGTGTTGATTGACAAAATTAAACTTGTCG
TAGCTGTGTTAGATTTGAACGAATCCAAATTAATAATTCATCTAACTAAA
GTTGTTCAGATCAAGGCTGATCTCACATGGGTTCTTAAAATAAATGGACG
aaatttggatgaaaatgaccaaatttataaagattttccATTGTTGAACA
ACAAAAacttggaagaattttttaatTGTATTAAAGAAACAGTACTATGT
GTTGGTAATAATGACTTTCAAGACATTATTGATGATAGATTGTCAAATAT
ATCTGAGTTTAAAGGTATTGATGGCAGTATTAAAGCATTGATAGAAAACA
ATAATTTCCAGCAACTAAAAGACACTTCATCAACTATCCGTTCAGTAGAT
TGCTCCCTTGTTGTATCATCTTCTTCAACCAGATGTGAACGCTGCAGTGA
ATTTCGAAGGAACACATTAAATAAAATTAGATACCGCAAATTGAATTCTC
CAGAGCTCCCATCTAAGTTCAAACCGAACATTTACTTGACAAACAACGAA
CTTCGACAGAAGTCAACAAATTTACAAGTTGAGAACAAACAACTCAAAAA
GAAGATTGCTAATTTAGAGAAAAAACTTGATCAAGCTATTGAAAACGATG
GAGTTATTTGTCAAACAGGTGATCACCAGTTCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029800-exon-sc0000770-1491911889:85950..87127 | TCONS_00029800-exon-sc0000770-1491911889:85950..87127 | Clytia hemisphaerica | exon |
| TCONS_00029800-exon-sc0000770-1510915933:85950..87127 | TCONS_00029800-exon-sc0000770-1510915933:85950..87127 | Clytia hemisphaerica | exon |
| TCONS_00029800-exon-sc0000770-1575043694:85950..87127 | TCONS_00029800-exon-sc0000770-1575043694:85950..87127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000770 | supercontig | sc0000770:85950..87127 . |
Blast
The following BLAST results are available for this feature:
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