TCONS_00029783 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029783
Unique NameTCONS_00029783
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length558

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029783 ID=TCONS_00029783|Name=TCONS_00029783|organism=Clytia hemisphaerica|type=transcript|length=558bp
tttttcatcaaaaactttTGGATGTTTCACACCCGGTCTGCAGAGTTTTG
AATCATCAAAATGAAGGTATTTTTGGTTATCCTGGCTTTTTGTGTGTTTG
GTACGGAGCAAAAAGAATGCAAAGACACGAGCACGAAAGCAAAATGCGAT
TTGATGATCAAAATGTTCGGTTTTAAAGATTATTGTATGAAAGAAAGTGA
CTTTAACAAAATGTGTCGCTTATCATGCGGGTTTTGCGTCAAACCAACCA
CACCAATGCCAACACCTAAACCAGATCCCAAATGTAAAGACACGAGCACG
AAAGCAAAATGCGATTTGATGATCAAAATGTTCGGTTTTAAAGATTATTG
TATGAAAGAAAGTGACTTTAACAAAATGTGTCAGTTATCATGTGGGTTTT
GCGTCAAACCAAGTTCCAACTGACCAATTCAATGAATGCTGGGATAAGTT
GATATATTTGGCttgtaatatatttttgtaATGTTACATAGTATAGTTTA
TTATGaaaatattatgaaaatattaTGAAAGTATATAAATTGTTTTACAA
AATCAAAT
Run BLAST on NCBI

protein sequence of TCONS_00029783-protein

>TCONS_00029783-protein ID=TCONS_00029783-protein|Name=TCONS_00029783-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MKVFLVILAFCVFGTEQKECKDTSTKAKCDLMIKMFGFKDYCMKESDFNK
MCRLSCGFCVKPTTPMPTPKPDPKCKDTSTKAKCDLMIKMFGFKDYCMKE
SDFNKMCQLSCGFCVKPSSN
Run BLAST on NCBI

transcript from alignment at sc0000769:74673..76657-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029783 ID=TCONS_00029783|Name=TCONS_00029783|organism=Clytia hemisphaerica|type=transcript|length=1985bp|location=Sequence derived from alignment at sc0000769:74673..76657- (Clytia hemisphaerica)
TTTTTCATCAAAAACTTTTGGATGTTTCACACCCGGTCTGCAGAGTTTTG
AATCATCAAAATGAAGGTATTTTTGGTTATCCTGGCTTTTTGTGTGTTTG
GTGAGTGGGTTTGGATATTTTTTTTCATTTTACTTTACGTTCTCATCATA
GTTTTTTATAATGACTATGTTTTCATCTACAGACCTGTTGGGAATCTCTG
CTTACTAGAAAGATTTCCTAAAAATCGTTGTCGGCTATGAAAAGTGGAAA
TAGATAGATTTTCGACCTGTAAACAAAAGAATCTGAAATCCACATCCATA
AGTCGGTGTTTTTTACACTTTTGGCAAAAACGTGAAGTTTTTTTAAACAG
GTTTTAAAATAAATACAAAATGCACCTTTTCTTAATATAATATCAGGGGA
ATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTTCACCA
CTTTAAAATGAAATTTTTAATCCCAAAACGCTCGCGAAACCGCACCTTTT
GGTATCTAAGAATGTTTTAAAGTTAAGTGGAAGTGACTTTTGATTAGTTT
TAGATTGTGATCAGTCCATTTTAACGATGAAATGCATCTTTTATAATTGT
TCAAGTTCAGAGGTGTTTTTCGGATGGAATTTTGGATCCAAAAGTGCTCT
TCATCATTATTTCATAAAATATAGAGATCATGTAACATGTTCAGACCATC
AGAATCAATTCAAGAGCCATCTAACTCTCATAATTCCAAAATTCTTAAAA
TCTAATATTTTGGAATATTGGATCCTTCTTCGCTCCTGGGACGAAAACTA
AAAGTTCTATGCTCGTGCGTTACACCTTTTTGAAAGATTTCATCCCAAAA
TGCTCGTTCAAATTCATTTTATTCAAGAAAAACCGTTTTTTAGAAAATTT
AATGTCACGTTTTTGCCAAAAGTGTAAAAAACACCGAAATAATTCTAATA
GCAGCGATTTTTATCTCGTTTCAGGTACGGAGCAAAAAGAATGCAAAGAC
ACGAGCACGAAAGCAAAATGCGATTTGATGATCAAAATGTTCGGTTTTAA
AGATTATTGTATGAAAGAAAGTGACTTTAACAAAATGTGTCGCTTATCAT
GCGGGTTTTGCGTCAAACCAACCACACCAATGCCAACACCTAAACCAGGT
AGTAGGGATCATATTTGCTGTTATTTTTTAAGCTTTTAAAATGTCTGTCC
AATGTCTGTCAGAAAAACTCAGAAAACCCTGGCTTATGGTAAGACTAACT
ATTTTTGGATGATTATTTTGAGCTCATTTGGGTTTCTATACAGACATCTG
GTGACCTGTTGTAAACTTTTAAGCTAATGGGGATGAAATCTCGAATAGAA
ATGAGCAGTAAAGAAAGTACAATAAGAATTGAAAATCGAGTTTACCGACT
GAATAATCCAGTGAAACATTCTCAAAATCATAGCTCTATCTTTGATCTTA
GATCCCAAATGTAAAGACACGAGCACGAAAGCAAAATGCGATTTGATGAT
CAAAATGTTCGGTTTTAAAGATTATTGTATGAAAGAAAGTGACTTTAACA
AAATGTGTCAGTTATCATGTGGGTTTTGCGTCAAACCAAGTTCCAACTGA
CCAATTCAATGAATGCTGGGATAAGTTGATATATTTGGCTTGTAATATAT
TTTTGTAATGTTACATAGTATAGTTTATTATGAAAATATTATGAAAATAT
TATGAAAGTATATAAATTGTTTTACAAAATCAAAT

Coding sequence (CDS) from alignment at sc0000769:74673..76657-

>TCONS_00029783 ID=TCONS_00029783|Name=TCONS_00029783|organism=Clytia hemisphaerica|type=CDS|length=1089bp|location=Sequence derived from alignment at sc0000769:74673..76657- (Clytia hemisphaerica)
ATCCCAAATGTAAAGACACGAGCACGAAAGCAAAATGCGATTTGATGATC
AAAATGTTCGGTTTTAAAGATTATTGTATGAAAGAAAGTGACTTTAACAA
AATGTGTCAGTTATCATGTGGGTTTTGCGTCAAACCAAGTTCCAACTGAG
TACGGAGCAAAAAGAATGCAAAGACACGAGCACGAAAGCAAAATGCGATT
TGATGATCAAAATGTTCGGTTTTAAAGATTATTGTATGAAAGAAAGTGAC
TTTAACAAAATGTGTCGCTTATCATGCGGGTTTTGCGTCAAACCAACCAC
ACCAATGCCAACACCTAAACCAGATGAAGGTATTTTTGGTTATCCTGGCT
TTTTGTGTGTTTGATCCCAAATGTAAAGACACGAGCACGAAAGCAAAATG
CGATTTGATGATCAAAATGTTCGGTTTTAAAGATTATTGTATGAAAGAAA
GTGACTTTAACAAAATGTGTCAGTTATCATGTGGGTTTTGCGTCAAACCA
AGTTCCAACTGAGTACGGAGCAAAAAGAATGCAAAGACACGAGCACGAAA
GCAAAATGCGATTTGATGATCAAAATGTTCGGTTTTAAAGATTATTGTAT
GAAAGAAAGTGACTTTAACAAAATGTGTCGCTTATCATGCGGGTTTTGCG
TCAAACCAACCACACCAATGCCAACACCTAAACCAGATGAAGGTATTTTT
GGTTATCCTGGCTTTTTGTGTGTTTGATCCCAAATGTAAAGACACGAGCA
CGAAAGCAAAATGCGATTTGATGATCAAAATGTTCGGTTTTAAAGATTAT
TGTATGAAAGAAAGTGACTTTAACAAAATGTGTCAGTTATCATGTGGGTT
TTGCGTCAAACCAAGTTCCAACTGAGTACGGAGCAAAAAGAATGCAAAGA
CACGAGCACGAAAGCAAAATGCGATTTGATGATCAAAATGTTCGGTTTTA
AAGATTATTGTATGAAAGAAAGTGACTTTAACAAAATGTGTCGCTTATCA
TGCGGGTTTTGCGTCAAACCAACCACACCAATGCCAACACCTAAACCAGA
TGAAGGTATTTTTGGTTATCCTGGCTTTTTGTGTGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_017010XLOC_017010Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029783-proteinTCONS_00029783-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029783-exon-sc0000769-1575043694:76558..76657TCONS_00029783-exon-sc0000769-1575043694:76558..76657Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1575043694:75260..75433TCONS_00029783-exon-sc0000769-1575043694:75260..75433Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1575043694:74673..74956TCONS_00029783-exon-sc0000769-1575043694:74673..74956Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1510915933:76558..76657TCONS_00029783-exon-sc0000769-1510915933:76558..76657Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1510915933:75260..75433TCONS_00029783-exon-sc0000769-1510915933:75260..75433Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1510915933:74673..74956TCONS_00029783-exon-sc0000769-1510915933:74673..74956Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1491911889:76558..76657TCONS_00029783-exon-sc0000769-1491911889:76558..76657Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1491911889:75260..75433TCONS_00029783-exon-sc0000769-1491911889:75260..75433Clytia hemisphaericaexon
TCONS_00029783-exon-sc0000769-1491911889:74673..74956TCONS_00029783-exon-sc0000769-1491911889:74673..74956Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000769supercontigsc0000769:74673..76657 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.304966	0.29739	0.115099	0.225214	0	0	0	0	0	0	0	0.270808	12.4398	9.54875	45.1396	86.8482	7.09705	11.8109	57.489	45.6839	45.6048	42.8589	57.4622	62.9441	16.2623	25.9104	1.67268	1.48761	75.9343	86.9064
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029783 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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