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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029776 ID=TCONS_00029776|Name=TCONS_00029776|organism=Clytia hemisphaerica|type=transcript|length=1723bp
CACGAACGTTTATTCTTAGTGAGGTTGAGTCTACAGGAAGGAGGGAAACA
AGACACCGAACCATGCTTCTTTGCATTATCGTCAAATGATTTAAGCGAAG
AGAAAGTCTTACAAGAACTGAAgggaagaaaagaaaattgtatTCACGGC
AATAATGACAATGTTATTCGCGCAGTCAGTGTTTTTGAGCCTATCCattt
atttgaagtcaaactATCGATATCTGAAGTTACTGGAGAGCTCTTCTGTG
AGGACGGGAGCTATATATGTTACAAATCAAGCAACCAGTCACGTGACACT
TGGACTTTAACATGCTGTGCTGGTATAAATGCTGATTTTGCTGCAAGTTT
GTTCGATTCCACGAAACAAAACTGGGACTTGTATGTCACGCCTGATAACT
TTTTTGGTGGATTCTCAAACTGTTCAAATCCAGAAGATCCTACAACTTGC
CAATGGAATGGAATGGTGAACGAACTAAGAGAAGGACGAGCTGACATTGC
CATAGCTGCAATGACCATGACTGAAGCACGATTAAGTGTGATTGATTTTA
CAGAGAATATCTTGGTCACGAAACTTGCAGTGGCTTTGAGAAATGAGCAA
GAGCATTTACCCTTCATCAAtctgaaatttgttgaaagtttaGATTGGTC
TTTGATTCTAGCATTAGTGGTGAATTCTGGTATCCTCTTTGTTGTCATGT
ATGCTTTGAATCACTTCCTAAGATACTATCATCCTCGCTCAAACAAATAT
CCAATAAAAGAAGCTTTCTCTTACGGAGCTGGCTTAACATTTCAACGTGA
TCTTGCAGGTAAAACACCAGATGATTGGTCGGCAAGAATAGTTGCTATTT
CTTATGCTGTCGCCTTGACAATCATTATGTCAACGTATATGGCTAATCTC
ACGGCAACGAACGTCTTAGCAGAGACATATTCAGATTTCAAAGTCATGAA
AGATCAAAAGATTTTAGATCCAACACCAGATTTCAAATATGGAGTTGCCG
ACGCAACGGCGGCCGAAAATATGTTAAAATCCTCTCCAAAATGGCGCAAA
GCCTATGAAGAGTTTGTAAAGAATTATATTACTAAAGATATCCCGGATGG
TATCCAGAAACTGTACAATGAaGAGCTTGATGGTTTCATTGAAGATGCTT
GGTATATCGGTATCGAGTTGTCCAAAAGATCGGAGTTTTGTGATAAGATT
GTCATAAAACATGATACACTTGCAGTAGCGCCCGCCTTTGGTATACGGAA
AGACTACAAATTGGCAAATATGTTCTCGAAAGAAATACGagcattaaaaa
acaaaaacatttttcaacagATTGATGATAAATGGGTTAAAAAATGCCCA
GCTACAAAACCGAAAGCATTCCAATTTGAGTTTGAATATGCAGGTGGAAT
GGTGATTCTAGTTGGAATCTTTCTTCTCATTGCTTTGGTTGTTTTCATAC
TCGAAACTATTTACGTTCATTGGAGGACTAAAAACCCAAGGAAAACACCC
AATACTAACACATTCGATAATGGAGCTTTTCAAACAGACGATTCATCAAT
TGATATGTTTCAAGAGTTCCCACGTAGTTATAAAGTGAATGGTTTGACCA
GGAGTGATGTATGATAGACGATTTTCTTGCAAATTAGAAGAAGTAATATT
ATTTTGACTAATGTTGTCATAAAACGTTAGGCAAGAGCCTGtttacagaa
aaaaagattgattttaattttat Run BLAST on NCBI transcript from alignment at sc0000769:8587..11783- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029776 ID=TCONS_00029776|Name=TCONS_00029776|organism=Clytia hemisphaerica|type=transcript|length=3197bp|location=Sequence derived from alignment at sc0000769:8587..11783- (Clytia hemisphaerica)
CACGAACGTTTATTCTTAGTGAGGTTGAGTCTACAGGAAGGAGGGAAACA
AGACACCGAACCATGCTTCTTTGCATTATCGTCAAATGATTTAAGGTGGG
TTATGTAAAAAAATACATTTATTTTCCAAAAATATTTCTTCCATTTTTAA
GATAGCCAAAATTTACTATATTAACTATTAAATAACCCAATGGGACAACG
TCAAATGACTTGACGTCTTTATATCACCCCTTTCATCCTCTAAATAACAT
TATTTGAATTATTTTAGGATGTCAATAAAATAAATCTAATGACTTTGTCA
AATCTGATTTACACAGGAACTCTTACATTAAATTCTCATAATTCGTCCTA
TTTTGTAAAGATTTGGTGATCAATTGCGCAGGAATCTAATATGTTTTCTT
CTTTATTTCCAATTTAAGCGAAGAGAAAGTCTTACAAGAACTGAAGGGAA
GAAAAGAAAATTGTATTCACGGCAATAATGACAATGTTATTCGCGCAGTC
AGTGTTTTTGAGCCTATCCATTTATTTGAAGTCAAACTATCGATATCTGA
AGTTACTGGAGAGCTCTTCTGTGAGGACGGGAGCTATATATGTTACAAAT
CAAGCAACCAGTCACGTGACACTTGGACTTTAACATGCTGTGCTGGTATA
AATGCTGATTTTGCTGCAAGTTTGTTCGATTCCACGAAACAAAACTGGGA
CTTGTATGTCACGCCTGATAACTTTTTTGGTGGATTCTCAAACTGTTCAA
ATCCAGAAGATCCTACAACTTGCCAATGGAATGGAATGGTGAACGAACTA
AGAGAAGGACGAGCTGACATTGCCATAGCTGCAATGACCATGACTGAAGC
ACGATTAAGTGTGATTGATTTTACAGAGAATATCTTGGTCACGAAACTTG
CAGTGGCTTTGAGAAATGAGCAAGAGCATTTACCCTTCATCAATCTGAAA
TTTGTTGAAAGTTTAGATTGGTCTTTGATTCTAGCATTAGTGGTGAATTC
TGGTATCCTCTTTGTTGTCATGTATGCTTTGAATCACTTCCTAAGATACT
ATCATCCTCGCTCAAACAAATATCCAATAAAAGAAGCTTTCTCTTACGGA
GCTGGCTTAACATTTCAACGTGATCTTGCAGGTAAAACACCAGATGATTG
GTCGGCAAGAATAGTTGCTATTTCTTATGCTGTCGCCTTGACAATCATTA
TGTCAACGTATATGGCTAATCTCACGGCAACGAACGTCTTAGCAGAGACA
TATTCAGATTTCAAAGTCATGAAAGATCAAAAGGTGAGATTTCAGAAAAG
TCAAAAAAGTTTCTTTGAAAAAGTTATTTGCTGAATCATTTTTCTAAAGA
TACTTCATTGGTTAAACCTAACAATAGTCTCTAAACAAAGTCAGAGAGAA
GTAAGAGTTTAGGGGACCTTAAGTTCGTAATTCAATCTCTAGTTCATTTC
ACCTCAAATGCACAGTATTTTAATGTATTTAGTCATTACTTGATCCTGTT
ATAACGATTGAAATTACAAGTTAGCCTACAAACTATTGTTGCGTCATTTT
CCTTTTCATTTCTTTCTTTCTCTCAAGATTTTAGATCCAACACCAGATTT
CAAATATGGAGTTGCCGACGCAACGGCGGCCGAAAATATGTTAAAATCCT
CTCCAAAATGGCGCAAAGCCTATGAAGAGTTTGTAAAGAATTATATTACT
AAAGATATCCCGGATGGTATCCAGAAACTGTACAATGAGTAAGACTTCTC
ATCACAAATGAAGTAAATTTTTAGGGTTGTGTTTGAATGCCACCATCGTT
TCAATGTGTGTTGATATAAAAAATCTCCGTTTATCAAAAAATGAGATCTC
TATGAACAGATCTAAATAGATCCTACAGAGACAATGATAGTGATGGGCCA
TGATTATTTTCATTAGCAATTATTTAGTAGATCAATTCAAAATAATACAC
AAAATAAATACGGTCGACACACACGTTCCGATGTAGTTAGTAGCAAAAAA
TAGACCCTGAGAGACAGTATTTGGACGAAGTTTGCATCTTGCCAGACATC
GATTGTTTTCAAGGGGTCTATGGCATTGAGTTTCAAGCCGAAGGCTAGAG
GTCAATCTCTTTGGTAGGATTTGAAGCCAACAAATCCTACCAAAGTTGCG
CGGCCTTGAGCGACCCGCCTGGTTTTTACACAAATGACAGATTGAAACTA
AAATTTACAGCTTAATTTCGAAAAATATATCACTCGAAGACAAAGGAATT
GCTAGATTCAATCCGTCATCAAAAATACGGCGCATATTTTAAGGCTTCAA
TTTTTCTTGCCTGAGAAAGGTTAGAGATTGACCTCTAGCCCTTCGGGCTT
AAAACTCAATGGTCTATGGTCTATGAAGTGAACGGAATATCATGGAAGAG
CGGGGATTCAAACCACGAATCCTTGGTTTGAGACACCGACGCCTTTGACC
ACTTGGCCATCGCTCCTTTAGACCAATTTTGTATAATTCTCCTTTAATGC
CCTAACTCTTTCTCGATAAATCTTCATTGATAGACTTTTACCAAAATGGC
CTAGGTTTGAAGTAAAACCCTCATGTAATTTCCTCTTTCTTTTAGAGAGC
TTGATGGTTTCATTGAAGATGCTTGGTATATCGGTATCGAGTTGTCCAAA
AGATCGGAGTTTTGTGATAAGATTGTCATAAAACATGATACACTTGCAGT
AGCGCCCGCCTTTGGTATACGGAAAGACTACAAATTGGCAAATATGTTCT
CGAAAGAAATACGAGCATTAAAAAACAAAAACATTTTTCAACAGATTGAT
GATAAATGGGTTAAAAAATGCCCAGCTACAAAACCGAAAGCATTCCAATT
TGAGTTTGAATATGCAGGTGGAATGGTGATTCTAGTTGGAATCTTTCTTC
TCATTGCTTTGGTTGTTTTCATACTCGAAACTATTTACGTTCATTGGAGG
ACTAAAAACCCAAGGAAAACACCCAATACTAACACATTCGATAATGGAGC
TTTTCAAACAGACGATTCATCAATTGATATGTTTCAAGAGTTCCCACGTA
GTTATAAAGTGAATGGTTTGACCAGGAGTGATGTATGATAGACGATTTTC
TTGCAAATTAGAAGAAGTAATATTATTTTGACTAATGTTGTCATAAAACG
TTAGGCAAGAGCCTGTTTACAGAAAAAAAGATTGATTTTAATTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029776-exon-sc0000769-1575043694:11689..11783 | TCONS_00029776-exon-sc0000769-1575043694:11689..11783 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1575043694:10501..11365 | TCONS_00029776-exon-sc0000769-1575043694:10501..11365 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1575043694:10046..10206 | TCONS_00029776-exon-sc0000769-1575043694:10046..10206 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1575043694:8587..9188 | TCONS_00029776-exon-sc0000769-1575043694:8587..9188 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1510915933:11689..11783 | TCONS_00029776-exon-sc0000769-1510915933:11689..11783 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1510915933:10501..11365 | TCONS_00029776-exon-sc0000769-1510915933:10501..11365 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1510915933:10046..10206 | TCONS_00029776-exon-sc0000769-1510915933:10046..10206 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1510915933:8587..9188 | TCONS_00029776-exon-sc0000769-1510915933:8587..9188 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1491911889:11689..11783 | TCONS_00029776-exon-sc0000769-1491911889:11689..11783 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1491911889:10501..11365 | TCONS_00029776-exon-sc0000769-1491911889:10501..11365 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1491911889:10046..10206 | TCONS_00029776-exon-sc0000769-1491911889:10046..10206 | Clytia hemisphaerica | exon |
| TCONS_00029776-exon-sc0000769-1491911889:8587..9188 | TCONS_00029776-exon-sc0000769-1491911889:8587..9188 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000769 | supercontig | sc0000769:8587..11783 - |
Blast
BLAST of TCONS_00029776 vs. Swiss-Prot (Human)
Match: NMD3A (Glutamate receptor ionotropic, NMDA 3A OS=Homo sapiens GN=GRIN3A PE=1 SV=2) HSP 1 Score: 130.183 bits (326), Expect = 1.899e-31 Identity = 99/398 (24.87%), Postives = 166/398 (41.71%), Query Frame = 1
Query: 211 KLSISEVTGELFCEDGSYICYKSSNQSRDTWTLTCCAGINADFAASLFDSTKQNWDLYVTPDNFFGGFSNCSNPEDPTTCQWNGMVNELREGRADIAIAAMTMTEARLSVIDFTENILVTKLAVALRNEQEHLPFINLKFVESLDWSLILALVVNSGILFVVMYALNHFLRYY------------HPRSNKYPIKEAFSYGAGLTFQRDLAGKTPDDWSARIVAISYAVALTIIMSTYMANLTATNVLAETYSDFKVMKDQKILDPTPDFKYGVADATAAENMLKSS-PKWRKAYEEFVKNYITKDIPDGIQKLYN--EELDGFIEDAWYIGIELSKRSEFCDKIVIKHDTLAVAPAFGIRKDYKLANMFSKEIRALKNKNIFQQIDDKWVKKCPATK 1359
+L + +T + D + SSN + CC G D + + ++DLY+ D +G + N W G+V +L G A +A+ + ++ AR VIDFT T L + +R P F+ L W++ L + FV ++ FL Y RS + A + L F R +A K P W+ R + +A+ +STY ANL A V + Y + + D K+ P+ F++G ++AE+ ++ S P+ E+++ Y PDG++ L N E+LD FI D + E+S ++ C + + G+ + L S+ I K+ + DKW + P K
Sbjct: 541 QLCLDPMTNDSSTLDSLFSSLHSSNDTVPIKFKKCCYGYCIDLLEKIAEDMNFDFDLYIVGDGKYGAWKNG---------HWTGLVGDLLRGTAHMAVTSFSINTARSQVIDFTSPFFSTSLGILVRTRDTAAPIG--AFMWPLHWTMWLGI-------FVALHITAVFLTLYEWKSPFGLTPKGRNRSKVFSFSSALNICYALLFGRTVAIKPPKCWTGRFLMNLWAIFCMFCLSTYTANLAAVMVGEKIYEELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPE----MHEYMRRYNVPATPDGVEYLKNDPEKLDAFIMDKALLDYEVSIDAD-CKLLTVGKPFAIEGYGIGLPPNSPLTANISELISQYKSHGFMDMLHDKWYRVVPCGK 915
The following BLAST results are available for this feature:
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