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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029744 ID=TCONS_00029744|Name=TCONS_00029744|organism=Clytia hemisphaerica|type=transcript|length=2198bpRun BLAST on NCBI transcript from alignment at sc0000768:76357..90565- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029744 ID=TCONS_00029744|Name=TCONS_00029744|organism=Clytia hemisphaerica|type=transcript|length=14209bp|location=Sequence derived from alignment at sc0000768:76357..90565- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029744 vs. Swiss-Prot (Human)
Match: ERBIN (Erbin OS=Homo sapiens GN=ERBIN PE=1 SV=2) HSP 1 Score: 179.489 bits (454), Expect = 1.431e-46 Identity = 103/233 (44.21%), Postives = 153/233 (65.67%), Query Frame = 3
Query: 588 SLGKLKFLETLKVDDNRLRALPTSIGGLSNLEELICSSNELVNLPPGIGLLRKLKNLNADENYIEELPEEVGSCISLTVVSIRQNRLLHLPDEIGRLANLTVFNISSNMIENLPYTXXXXXXXXXXXXSENQAKPLIPLQMDWDEANEKRYLTCYMFPQRPIEIYDEAQSVEDNRESINQSLMEEEWKKRTSVVFDLDDDD------PQVVRLSRQPTPFPKDIRDKINQFRT 1268
++G LK + TLK+D+N+L LP SIGGL ++EEL CS NE+ LP IG L L+ AD NY+++LP E+GS ++TV+ + N+L LP+E+G + L V N+S N ++NLP++ KL++L A+WLS+NQ+KPLIPLQ + D +K LT YMFPQ+P ++ + DN ES N SL EE+ K+R V F+ D+D P+ L R PTP+P ++++ + +T
Sbjct: 271 TIGSLKNITTLKIDENQLMYLPDSIGGLISVEELDCSFNEVEALPSSIGQLTNLRTFAADHNYLQQLPPEIGSWKNITVLFLHSNKLETLPEEMGDMQKLKVINLSDNRLKNLPFSFTKLQQLTAMWLSDNQSKPLIPLQKETDSETQKMVLTNYMFPQQP--RTEDVMFISDN-ESFNPSLWEEQRKQRAQVAFECDEDKDEREAPPREGNLKRYPTPYPDELKNMVKTVQT 500 HSP 2 Score: 102.064 bits (253), Expect = 4.391e-22 Identity = 47/91 (51.65%), Postives = 64/91 (70.33%), Query Frame = 3
Query: 1782 FRVTIKKTPNLGFSVSGGKDAPGNPFRPGDTGIFITRVIPDGPAADVLQPGDKLLEVNGNDFRCVQHETAVNVLKASQE-VHLVVARRASN 2051
RV ++K P LGFS+SGG GNPFRP D GIF+TRV P+GPA+ +LQPGDK+++ NG F ++H AV++LK Q V L++ R S+
Sbjct: 1322 IRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKLLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVREVSS 1412 The following BLAST results are available for this feature:
BLAST of TCONS_00029744 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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