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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029740 ID=TCONS_00029740|Name=TCONS_00029740|organism=Clytia hemisphaerica|type=transcript|length=3892bpRun BLAST on NCBI transcript from alignment at sc0000768:48231..59811- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029740 ID=TCONS_00029740|Name=TCONS_00029740|organism=Clytia hemisphaerica|type=transcript|length=11581bp|location=Sequence derived from alignment at sc0000768:48231..59811- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029740 vs. Swiss-Prot (Human)
Match: ZAP70 (Tyrosine-protein kinase ZAP-70 OS=Homo sapiens GN=ZAP70 PE=1 SV=1) HSP 1 Score: 426.787 bits (1096), Expect = 1.470e-133 Identity = 245/627 (39.07%), Postives = 347/627 (55.34%), Query Frame = 3
Query: 93 MTDPST-LDWFHGRITRDTAEKNLSKTSMQDGTYLLRDSTQQVGSYVLSVCKDKKVIHYQILKQENGMVGINDGPKFIGPVELVEHHKANLDGLLTKLTIACSRAAGVKAES--YKNISHQDVDEATRTVLRSEGIENEDAVRRFKGEIECVVGNILHTKQPWFHGVIPRDEADRRLNSENCTDGLFLIRERGNPKATYVLGICSNNKIYHYLFERNKYDQLSIKSGRPFDNLMAVVNFYSQKSEGLLCKLQRPCDVAHFEYH-----PKFEKHKNILLHPDIQNTLRRTLSRNETELKTYRRLSRQMXXXXXXXXXXXXXXXAGQVNEAWKYEKIYDSANVIKMEG--FNSPFGSKE--RDIKLDHKKLHLEHA---LGHGNFGSVMKGTYMLPTSKTMAVAVKTLKEEDIPGQKSEILREAGIMAKLDHPNIVRLVGVVQSPSFMIAMELAPQGPLHKYL-KKHKEMPLLNILILMLQVDEGMCYLESQHFVHRDLAARNVLVVSENFVKISDFGMSRAMGAGNEYYRAERAGKWPLKWYAPECIYYRIFTSKGDVWSYGITMWEAVTYGGKPYPGMKGQELVEKVESGYRLECPPGCPDEIYQLMRQCWEFKQEDRPKFAEIGQ 1925
M DP+ L +F+G I+R AE++L M DG +LLR + +G YVLS+ D + H+ I +Q NG I G GP EL E + + DGL L C+R +G++ + + + V + R + EG E A+ ++E ++ H + PW+H + R+EA+R+L S TDG FL+R R + TY L + +YHYL ++K + I G FD L +V + K++GL+ L+ C + P H + L HP RR + N G E + D + M+ + SP+ E +D KL K+ +L A LG GNFGSV +G Y + K + VA+K LK+ E++REA IM +LD+P IVRL+GV Q+ + M+ ME+A GPLHK+L K +E+P+ N+ L+ QV GM YLE ++FVHRDLAARNVL+V+ ++ KISDFG+S+A+GA + YY A AGKWPLKWYAPECI +R F+S+ DVWSYG+TMWEA++YG KPY MKG E++ +E G R+ECPP CP E+Y LM CW +K EDRP F + Q
Sbjct: 1 MPDPAAHLPFFYGSISRAEAEEHLKLAGMADGLFLLRQCLRSLGGYVLSLVHDVRFHHFPIERQLNGTYAIAGGKAHCGPAELCEFYSRDPDGLPCNLRKPCNRPSGLEPQPGVFDCLRDAMVRDYVRQTWKLEGEALEQAIISQAPQVEKLIATTAHERMPWYHSSLTREEAERKLYSGAQTDGKFLLRPRKE-QGTYALSLIYGKTVYHYLISQDKAGKYCIPEGTKFDTLWQLVEYLKLKADGLIYCLKEACPNSSASNASGAAAPTLPAHPSTLTHPQ-----RRIDTLNSD----------------------------GYTPEPARITSP-DKPRPMPMDTSVYESPYSDPEELKDKKLFLKRDNLLIADIELGCGNFGSVRQGVYRM-RKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQAEALMLVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKRMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQ 591 The following BLAST results are available for this feature:
BLAST of TCONS_00029740 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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