TCONS_00029733 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029733
Unique NameTCONS_00029733
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029733 ID=TCONS_00029733|Name=TCONS_00029733|organism=Clytia hemisphaerica|type=transcript|length=764bp
CAGGCGTATTCAACCAACTAGGAATTAACGATATTGTTTACCCtggtttc
actttcactttatCATTTTCAGAGTtctagagtttttttttttcaagatc
tcaacttttttttataaggcaATGGATCATAGACTATAAATATGCATTTT
GTTTGAATCTATAATTTTAATCAACAAAATGTCAAGTTTAACCTTATGGG
ATTTTGCACAAAAGAAGTACAAGCAAGAATTATTGGATGCAGGAGAAGAG
AATAGTAATATTCTGAGTGAATCACACATCATTGTCTGCGGTGCAAAAGA
TTCTGGCAAAACAACTTTGATCAataaatttttagaaaaGGATGATCCAG
CAAAACCAACCATTGCTCTTGATTTTTGTTATGGAAGGCGCTCCAAGCCC
AACAACATGtcAGGTGTAAAAGATGTGACAAATGTTTCAGAGATTGGTGG
CGGGAAGAGTACGGTCAAACTCTTCAATGCcgtcatttcaaaacaaaatc
taagtGGGTTGGTGATAGTGTTGGTGCTCGATCTATCAAAACCAAGTGAA
ATATGGGAGGTTCAACATGCAATTTTAACACAGGTTTGTTACGTACACCT
TTAATCTATGATGATGTAGTATACATTTTTGAAACTGTTTGCTTTTGTTG
TAAGATAATCAGATGCAGGCNaatggtgtaaatccatttcatcatggata
ttcttaacttttttgggaaaatcatcctaaaatattcttacagcattctt
aggttaggatccta
Run BLAST on NCBI

protein sequence of TCONS_00029733-protein

>TCONS_00029733-protein ID=TCONS_00029733-protein|Name=TCONS_00029733-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MSSLTLWDFAQKKYKQELLDAGEENSNILSESHIIVCGAKDSGKTTLINK
FLEKDDPAKPTIALDFCYGRRSKPNNMSGVKDVTNVSEIGGGKSTVKLFN
AVISKQNLSGLVIVLVLDLSKPSEIWEVQHAILTQVCYVHL
Run BLAST on NCBI

transcript from alignment at sc0000768:110761..119745+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029733 ID=TCONS_00029733|Name=TCONS_00029733|organism=Clytia hemisphaerica|type=transcript|length=8985bp|location=Sequence derived from alignment at sc0000768:110761..119745+ (Clytia hemisphaerica)
CAGGCGTATTCAACCAACTAGGAATTAACGATATTGTTTACCCtggtttc
actttcactttatCATTTTCAGAGTtctagagtttttttttttcaagatc
tcaacttttttttataaggcaATGGATCATAGACTATAAATATGCATTTT
GTTTGAATCTATAATTTTAATCAACAAAATGTCAAGGTAAGCTACAAGCt
caatttttacttttcttttatgACAATACTAATAGTCCCAttattatttc
aattttggctcaaaaaacttTCTGCAAGTGTGATGTGGATGTGTGATTAT
TCTATATAGTGTGTGCAGTTGCATTGGCGTTTATAGCACTAAGACCTGCC
TGTAATCTTAGTATACTAAGCCATAACATCATTTTAACAGCTTTGTAAGG
TTCAATTCACGCTCAAAAGTTTCCAGGGCTCCTCATTCAACAATGCAATG
GGGAGGAAAATATGCCcctcaacaatttttttttttataaagaaggGTTA
AAGCAAAgtcataaatctaaaaatttactGCTTCCTTAGAAAGATTCATT
GttgctttgtttctaaatgaTCAATTAATTGGGTGCTTCTCATTTAAAAG
ACCTGGGAatgtcagtgtagacctaaagctctaaaacagcatctaataac
atgaaaaccagaatatgattcttcaatgggaatcaaaactataaagtgca
cttacaaacatttTGTCAGATTTAACAAacttaataaccgcactgtcatc
attgacaataaaacaaacgattttctgtcaggagccttgtaaacattcca
acaacttccatcgaaatgatctatcacagctcagtctaccatttttagcg
cggtccgaggattgagccgagaaNATGTGACAATTGTCTAGAAAGGGATC
ACAGCAGCGTAAATAACGGGGACTCTCTATCTGGATAAAAACAActagag
taccctgcccagtgaaatttttggattcaaatttttcaattacttttaac
ttttttgaaaatccttttcaaccaacggttagacaacttttaacatgttc
ttcgtgtttgttttgattttttatttgaggcgatcttcttagaaNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNactaccaaaagaaattctccagaggtttgtttttgtatgacttttctg
ggttcaaagacgttcggtcgccaactagaccggtcgccaactgggcaggg
gactctactCTCTGCTGCTCTTGGTCTCTATACCCgttgattgaaatatt
tctatcccaAATATCTTAGCCTACAgtaaaataatttgcaaaaagGACCT
GTAGGATTGATGTTAGAGGTAAATCTACATTAAAAAGACTTCTATTAAAT
TAACTCCCACAATAAGTCTTTGTCGCTGAAATAATCATCAAGCTCTTATA
ACATACTTAAGACATCAACCTCTTTAGCGAGcatataccgtaagttggtt
tAATTTCAACATCCCTCTAATTTTGTGTTGAGATAAAGATGAGAATAATA
AGACTGATGGACTCCTCAACTGATTGTTgattagtttcaatcagcgattc
caatcaccttcctattattcctatctctaaagaagggtgacgaaattaga
agagggatgttgacaaCTTATGGTACAACCTCTTAGTATACTACAACCTT
ATTACAAGTTAAATATCTTTGTCAGTTAATATATTAAGAGGTTGTAGTAT
ACTCTGTGGTCTTAGTATGCTACGGTTAAACCTAACTGTGTGTTAAAAAG
ACATCTTTcgtatatttatatatttatatttaatatcataattttatttg
tcaGTAAAAAAATTACACTACTGTCAGTTTCACGCTGAACGATTTGTTGA
CATCGAGCACTCTTTACAACGGAAATAACTTGCTTTGTTtccatatttat
atttattttgctttgcaaaCATTGAAgcctttcttttttttgcacaGAAA
AATATGTGGCTTTGAACCGTGACCTTAATGATTTCACCCATGTGAATCAG
CGGGATAGAAATAGGATTGTTATCCTGAAGgttttttttcaacaattttt
gagGGCATTAACGATGATCCCCTCCCCCCATACGACCTGAagctgttaaa
aaaaaaattagtttccatcagcgattcTGATCTTCTTATTTTCCAATTCC
AATCTCTAAAAAGGGTATCAAAATTAGATGAGGGAGTGTTGGGATTCTTA
TGTTTgacaaaaatggttaaaaagtTAATGTACAATAATAATGCATCAGT
GTGCCATTGTTTTAAGGCTTcagtttttaaaattaaaacttcTAATTTTA
CTTCATATTAAGGTGATTAGAAAGagttttccaaatattttggattAATT
TGACATTGATATTgtcctttagaaaaagtatacTTATAATCACATACATT
CTTTTTTAGTTTAACCTTATGGGATTTTGCACAAAAGAAGTACAAGCAAG
AATTATTGGATGCAGGTTAGAGTTATTTATTATTGTAGTTATAAAACATA
GTATTCTATCAACTTCTATCACAGAACTTTTCAGTTACAAGACACATACC
aagaaatttcattcttttaTTACTTAAACATCACATGAATTTTTTCACGA
TCCTAAATTCTATCTTAGTTGTCCGTGCAGAAATGTTTGAGTTTAAATTA
TATCTGATATAAagtgaagaatatttttgttaattatgtatatttacgat
ttttttagtaattttaatttataaatcaTTCCGAAACAACGGGGAGTTTA
GCAAAAAGTCAAAgtgaatttaaatagtggtatgtgaaagaaaaaattga
agatgatagaagaaaagtaatagtggagaaacaatgaattgcaaaatttt
tttgataagcaCACTTCAGTACAATCTTTTACACaagtttaatttttatt
ttaagtttagTTTTAAACAAGTTTTAATAagcgtttttatttttaagcca
TTATACCCCATTTATTTATATCACATTTAGGAGAAGAGAATAGTAATATT
CTGAGTGAATCACACATCATTGTCTGCGGTGCAAAAGATTCTGTAAGTca
ctaaaaatttattttgaagaattcagtggaaaatggaaacaaaatctttt
aggCTCAAACTTCTACAGATTATTTGAACAAGCTAATCTAAAGAGATCAG
AATCAAATTTTGTGTACCTATAGGTTCTAATCTGTCAATCGTTACTTTTT
CATTTGTATCAATTTAGTACAGTCCATTTTGGTTGTAACTTTCACAGCAT
TTAAAAGTTTTCTGTTCCTTGTTTTATCTATAATTCATAAACTCACAATA
TGACTTGTTAGTGTTCTTCTCTGGCCAACTaacataaattataaattgta
gATCATAAGAATTAGCTATTTGGAGGCTATATGGGTGGTCCCCTCGATCA
TGAAAGTAGCCCCATTTGATGGTAATCAAATGTAGTCTCTGCATCATCAT
TCACTGATAAAGAGCATCATGTTCTAGATCATTATTTTCTCATTTCTTAT
TTTAGGGCAAAACAACTTTGATCAataaatttttagaaaagtaaGAACAA
TTTCTCTCTGCTAATGTTAACACTATATATAATGAAAAACTGAATTGATT
AATGATATGTGGTCCTttttattgttatatttttctgaataaacaaaaaa
aaaatttcttttcctctttcggacaaatcttgctccacatccatgtcaat
ttaatgtcaaaaagcttgtaaattaaaattgatgtaagcaaacgatacta
ctcttgtttaaaaacaaacaaaaccttttaggttttaatatgaaaaaaaa
tataataatttgagatattttatcATAGGGATGATCCAGCAAAACCAACC
ATTGCTCTTGATTTTTGTTATGGAAGGCGCTCCAAGCCCAACAACATGgt
aaatttcttttattgacTTTACTTGACTTACTGATAAGTGTAGAATTATC
ATTGTTTCATTATATATATGAAGTCTAGAAGTATGAAACGAGTCTAGCAG
TATGAAACCTTCAACTATTTAAATGGAAAAACAGAGAACAAAGCCTGCGA
AACAAAAGGAGAagacaaatcacaacaacaaataccgggtgtgccacaaa
taagttaccctctttgaatTTATATTGCAGGCAGTAGAAAAGTAGAAAAG
AAATTATTCAAAGATTATTTCGGAATCATTCAGtggaaagcctaacttaa
aatttggtgtattactttttaattttacttcattagtTCAAAAGtttatg
ttcaaaaacctaaaatgtcaattttaaaaaatgacaaaaaaaggcgaaaa
acgaGAGTATTAAATTGATTGTAACAAATAGAGGCACAAAACGATTTTAT
GCATCAGGAAATGTATTTGCATTATGTAAAAAGCACTTATTTTCAAGATT
ATGCATCCCTGTAAATACATTCCATCATCTGTGAATCGAGATGAGCTGCA
ACAGTTCAAACGaagcatttttctcaaaactttcaccTTCTGCCACCTTT
CTCGACGATGATGTACACACAGAAAACTATCGGAAACTCTtggaaagatg
ttgaaaattttgtggggTTTGAAGCATTCAGCATTTTGCTTATGCCCAAG
GGAAAAAcagaagtaaaaaaagacaatagagataaagaaaacataaagaG
TGTTACAAGGAGCAAGACATTGTACTTGTATGTTTTAACTGTATGTTTTG
GTAAAAGAGAAGTCGTTTCTCTCATAAATTGATACCCttgtttttagctt
tttttttacatttttttaaaattgacattttaggtttttgaacataactt
ttgaactaatgaagtaaaattaaaaagtaatacaccaaattttaaatCGA
GATCCATCAAAGTAACAAACTAAACGACCTCTGGAATGCTGTTTTTATAT
AACTacttaaaatttgatttttttaaggtTAAAACATGTTAGCAAATAAA
ACGCTTTGGTCAGATCACTTGACCATGTCCGTAATTGACCAGTCATCatt
caaatatttctaaaaaaagctAACGTGAgtagaatttagaaaaaactaaa
ttgtgCACACATTTTCTATAAATTATATAAATGTTGATTTATTTCTTATC
ATTTTGTTATTATAtggtctttttctttttcaatttcagtcAGGTGTAAA
AGATGTGACAAATGTTTCAGAGATTGGTGGCGGGAAGAGTACGGTCAAAC
TCTTCAATGCcgtcatttcaaaacaaaatctaaggtaatattctcaactt
cagttgagctagaatctcagaatgtttgtgagtttgtgagtttgtccaca
aactttggggcagcgtagagagcggaataattggtttaaggaactgaaat
ttggcacaccccctccttatgttaaaacttaggggtattttttcaatttt
tttaatttcgcttttTTTCGCGAGTTATCCCCATTTTACCGGGAATTTGC
GCTTATTTAACGTCATAAAGgtcaaaataattgacgtcaaatattttttt
aaatgctaaaaatacaaaaatagaaattttcattcatgttgaaaaatatt
tgacgtcaatttatcTAGGTGCCAAAATAAAAGGTTGCTCTACACacgga
aaaaaattctttattctAAATTTACCTATGACTGAGCTTTCTCTAATCCT
TCTGAGTACTCATCGCTCTGGGTTTTATAATTGAACCTTCCCTTTCCTGA
GTGCCCATCAAAGAAGGCTTTTTTCACCCCGTGTTTGCAATTTAGCTACC
TTATCCCGAGTATCCTTCACTCTGGGCTTACAAGCAAGCTTTCCCTAATT
CTGAGTGCCCATCACTCTGGGTTTACAACTGGTTTACGCCTATCACCCTG
GATTTACAATTGAGCTTTCTCTTATCCCGAGTAACcattaccctgggttt
acaatttGACCTTCCTTAATCTCGAGCGCTtatcaccctgggtttacaac
gAAGTTTCTCTTATCCCGAGTAACCgtcaccctgggtttacaataaTTGG
ACCTTCCTTAATCACTAGCGCCTATCACCCTGGGTTTGCAACGGCCTTCT
AGCCTTCTATTATTATGAGAGCCCATCACCCtgtttttaaaaagtgttta
caattgggccttccaCTTTCACACGTACAccgaagttgagcccagtgctt
taGCACGTTACAGTTAGTTAAAgtaatattctcaacttcagttagagcta
gaatctcagaatgtttgtttgtgagtttgtgagtttgtccacaaactttg
gggcagcgtagagagcggaataattggtttaaggagctgaaatttggcac
acgccCTCCATATGTTAAAACTTAGGGgtggttttttcaatttttttaat
ttcgcttttTTTCGCGAGTTATCCTCATTTTACCGGGATTTTGCGCTTAT
TTAACgtcataaaagtcaaaataattgacgtcagatatttttttaatttt
ttttagattcattgacgtaaatgaatttattgacgtcaaatatcattttt
taacttttcaagtgTCAATGCCTTAAATTTTTCTACTTGAATTTTTGCAA
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAATCGAGCCTTCCCTTTCCTGTGAAC
GATCGCCACGTAGGCTTATCAACCAAAGTTTACAATTTAGCCCTGCCTTA
TTCCGAGTAACCATCACTTTTGGAATACAATTTTAAGCCTTCCCTAGTCC
TGATTACTCATCACCCTATGGGTTTACGACTTAGCCTTCTCTTATTCCCA
ATCACCATTCACCACGGGTTTACAATCGGTCTTCTCTTATCCCTAGTACC
CATTGccctttttaaaaaagtgtttacaattgggcctttcaCTTTCAGAC
GTAAGCTGAAGTTGAGACCAGTGCACGTTACAGTAATGTCCCTTTGACGT
TAAAAATGTAAAACTAATCTACATTACACTACATGCAAAAAAACGCCAAC
GAAGGCCGGCGTGAAAAAGGGGCAATAATAAAGTATTTATAATATTATAT
TTAGAAGCAAAAGTGACCGtcattttaaaatgatttaTAACAAAATCTAA
GGTAACTTGAAAACCAACAACACTGTAATATCCAGTGTTCGCAGTTCTTC
CAACTCATCTCATATGGATTGCCGTCTCATTAAAGTATAAAAAGGAGCTT
TTCCGCCTTAGAGTTTAGCAAAACTAAGTAAAATATTGAACTCCTGGGCT
TAAAATCTGTTGTGTTGTATCCATTTTTTGTCTGAGAtgaagttttgttt
tttgacCACTGAGTATATCTGTGAAATTCATTGTCTTAAAATTCTTTGAT
TACTATTGCAAGgttttttattgtaaaatttgtatTTAAATGTATCATCT
TTAATACTGATGTCAAGTTCAAGGTAAATATTACCATGATCACATTTATT
TTGGTGTTCAACTGGGAAAATTCCTTTAAGGCTTTTCCTCTAATTCATAC
ATGAATCTGAAACAATTCTTTAACAAGAAGGAAATATCTGTCCTTGGTGA
ATACGCTTTTATAACTTATAAATCCCAAAGAACCAGACAGTGTCGATTAA
ACAAGTTTCAATGAAAAttgcaatcgaacgcaatcgaacgcaaggGAATG
ATTCCTTACAATCGAAGAGTCGAATACAATCTTATTGTTATATTGCTTTC
GACAATCGATTTACAATAATTTGATTACACCCAATTGCGTTCAAATGATT
CTACATtagattcgttcgattgacaccgtctcgAAATATTATGATATTGG
TCAATTtatgttttctatttttaagtGGGTTGGTGATAGTGTTGGTGCTC
GATCTATCAAAACCAAGTGAAATATGGGAGGTTCAACATGCAATTTTAAC
ACAGGTTTGTTACGTACACCTTTAATCTATGATGATGTAGTATACATTTT
TGAAACTGTTTGCTTTTGTTGTAAGATAATCAGATGCAGGCNaatggtgt
aaatccatttcatcatggatattcttaacttttttgggaaaatcatccta
aaatattcttacagcattcttaggttaggatccta

Coding sequence (CDS) from alignment at sc0000768:110761..119745+

>TCONS_00029733 ID=TCONS_00029733|Name=TCONS_00029733|organism=Clytia hemisphaerica|type=CDS|length=2982bp|location=Sequence derived from alignment at sc0000768:110761..119745+ (Clytia hemisphaerica)
ATGTCAAGTTTAACCTTATGGGATTTTGCACAAAAGAAGTACAAGCAAGA
ATTATTGGATGCAGGAGAAGAGAATAGTAATATTCTGAGTGAATCACACA
TCATTGTCTGCGGTGCAAAAGATTCTGGCAAAACAACTTTGATCAataaa
tttttagaaaaGGATGATCCAGCAAAACCAACCATTGCTCTTGATTTTTG
TTATGGAAGGCGCTCCAAGCCCAACAACATGtcAGGTGTAAAAGATGTGA
CAAATGTTTCAGAGATTGGTGGCGGGAAGAGTACGGTCAAACTCTTCAAT
GCcgtcatttcaaaacaaaatctaagtGGGTTGGTGATAGTGTTGGTGCT
CGATCTATCAAAACCAAGTGAAATATGGGAGGTTCAACATGCAATTTTAA
CACAGGTTTGTTACGTACACCTTTAAATGTCAAGTTTAACCTTATGGGAT
TTTGCACAAAAGAAGTACAAGCAAGAATTATTGGATGCAGGAGAAGAGAA
TAGTAATATTCTGAGTGAATCACACATCATTGTCTGCGGTGCAAAAGATT
CTGGCAAAACAACTTTGATCAataaatttttagaaaaGGATGATCCAGCA
AAACCAACCATTGCTCTTGATTTTTGTTATGGAAGGCGCTCCAAGCCCAA
CAACATGtcAGGTGTAAAAGATGTGACAAATGTTTCAGAGATTGGTGGCG
GGAAGAGTACGGTCAAACTCTTCAATGCcgtcatttcaaaacaaaatcta
agtGGGTTGGTGATAGTGTTGGTGCTCGATCTATCAAAACCAAGTGAAAT
ATGGGAGGTTCAACATGCAATTTTAACACAGGTTTGTTACGTACACCTTT
AAATGTCAAGTTTAACCTTATGGGATTTTGCACAAAAGAAGTACAAGCAA
GAATTATTGGATGCAGGAGAAGAGAATAGTAATATTCTGAGTGAATCACA
CATCATTGTCTGCGGTGCAAAAGATTCTGGCAAAACAACTTTGATCAata
aatttttagaaaaGGATGATCCAGCAAAACCAACCATTGCTCTTGATTTT
TGTTATGGAAGGCGCTCCAAGCCCAACAACATGtcAGGTGTAAAAGATGT
GACAAATGTTTCAGAGATTGGTGGCGGGAAGAGTACGGTCAAACTCTTCA
ATGCcgtcatttcaaaacaaaatctaagtGGGTTGGTGATAGTGTTGGTG
CTCGATCTATCAAAACCAAGTGAAATATGGGAGGTTCAACATGCAATTTT
AACACAGGTTTGTTACGTACACCTTTAAATGTCAAGTTTAACCTTATGGG
ATTTTGCACAAAAGAAGTACAAGCAAGAATTATTGGATGCAGGAGAAGAG
AATAGTAATATTCTGAGTGAATCACACATCATTGTCTGCGGTGCAAAAGA
TTCTGGCAAAACAACTTTGATCAataaatttttagaaaaGGATGATCCAG
CAAAACCAACCATTGCTCTTGATTTTTGTTATGGAAGGCGCTCCAAGCCC
AACAACATGtcAGGTGTAAAAGATGTGACAAATGTTTCAGAGATTGGTGG
CGGGAAGAGTACGGTCAAACTCTTCAATGCcgtcatttcaaaacaaaatc
taagtGGGTTGGTGATAGTGTTGGTGCTCGATCTATCAAAACCAAGTGAA
ATATGGGAGGTTCAACATGCAATTTTAACACAGGTTTGTTACGTACACCT
TTAAATGTCAAGTTTAACCTTATGGGATTTTGCACAAAAGAAGTACAAGC
AAGAATTATTGGATGCAGGAGAAGAGAATAGTAATATTCTGAGTGAATCA
CACATCATTGTCTGCGGTGCAAAAGATTCTGGCAAAACAACTTTGATCAa
taaatttttagaaaaGGATGATCCAGCAAAACCAACCATTGCTCTTGATT
TTTGTTATGGAAGGCGCTCCAAGCCCAACAACATGtcAGGTGTAAAAGAT
GTGACAAATGTTTCAGAGATTGGTGGCGGGAAGAGTACGGTCAAACTCTT
CAATGCcgtcatttcaaaacaaaatctaagtGGGTTGGTGATAGTGTTGG
TGCTCGATCTATCAAAACCAAGTGAAATATGGGAGGTTCAACATGCAATT
TTAACACAGGTTTGTTACGTACACCTTTAAATGTCAAGTTTAACCTTATG
GGATTTTGCACAAAAGAAGTACAAGCAAGAATTATTGGATGCAGGAGAAG
AGAATAGTAATATTCTGAGTGAATCACACATCATTGTCTGCGGTGCAAAA
GATTCTGGCAAAACAACTTTGATCAataaatttttagaaaaGGATGATCC
AGCAAAACCAACCATTGCTCTTGATTTTTGTTATGGAAGGCGCTCCAAGC
CCAACAACATGtcAGGTGTAAAAGATGTGACAAATGTTTCAGAGATTGGT
GGCGGGAAGAGTACGGTCAAACTCTTCAATGCcgtcatttcaaaacaaaa
tctaagtGGGTTGGTGATAGTGTTGGTGCTCGATCTATCAAAACCAAGTG
AAATATGGGAGGTTCAACATGCAATTTTAACACAGGTTTGTTACGTACAC
CTTTAAATGTCAAGTTTAACCTTATGGGATTTTGCACAAAAGAAGTACAA
GCAAGAATTATTGGATGCAGGAGAAGAGAATAGTAATATTCTGAGTGAAT
CACACATCATTGTCTGCGGTGCAAAAGATTCTGGCAAAACAACTTTGATC
AataaatttttagaaaaGGATGATCCAGCAAAACCAACCATTGCTCTTGA
TTTTTGTTATGGAAGGCGCTCCAAGCCCAACAACATGtcAGGTGTAAAAG
ATGTGACAAATGTTTCAGAGATTGGTGGCGGGAAGAGTACGGTCAAACTC
TTCAATGCcgtcatttcaaaacaaaatctaagtGGGTTGGTGATAGTGTT
GGTGCTCGATCTATCAAAACCAAGTGAAATATGGGAGGTTCAACATGCAA
TTTTAACACAGGTTTGTTACGTACACCTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016985XLOC_016985Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029733-proteinTCONS_00029733-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029733-exon-sc0000768-1491911889:110761..110946TCONS_00029733-exon-sc0000768-1491911889:110761..110946Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:110761..110946TCONS_00029733-exon-sc0000768-1510915933:110761..110946Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:110761..110946TCONS_00029733-exon-sc0000768-1575043694:110761..110946Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:113920..113975TCONS_00029733-exon-sc0000768-1491911889:113920..113975Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:113920..113975TCONS_00029733-exon-sc0000768-1510915933:113920..113975Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:113920..113975TCONS_00029733-exon-sc0000768-1575043694:113920..113975Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:114491..114552TCONS_00029733-exon-sc0000768-1491911889:114491..114552Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:114491..114552TCONS_00029733-exon-sc0000768-1510915933:114491..114552Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:114491..114552TCONS_00029733-exon-sc0000768-1575043694:114491..114552Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:115016..115050TCONS_00029733-exon-sc0000768-1491911889:115016..115050Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:115016..115050TCONS_00029733-exon-sc0000768-1510915933:115016..115050Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:115016..115050TCONS_00029733-exon-sc0000768-1575043694:115016..115050Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:115339..115408TCONS_00029733-exon-sc0000768-1491911889:115339..115408Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:115339..115408TCONS_00029733-exon-sc0000768-1510915933:115339..115408Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:115339..115408TCONS_00029733-exon-sc0000768-1575043694:115339..115408Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:116650..116744TCONS_00029733-exon-sc0000768-1491911889:116650..116744Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:116650..116744TCONS_00029733-exon-sc0000768-1510915933:116650..116744Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:116650..116744TCONS_00029733-exon-sc0000768-1575043694:116650..116744Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1491911889:119486..119745TCONS_00029733-exon-sc0000768-1491911889:119486..119745Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1510915933:119486..119745TCONS_00029733-exon-sc0000768-1510915933:119486..119745Clytia hemisphaericaexon
TCONS_00029733-exon-sc0000768-1575043694:119486..119745TCONS_00029733-exon-sc0000768-1575043694:119486..119745Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000768supercontigsc0000768:110761..119745 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.8365	25.641	55.0069	50.7485	57.0059	41.2331	34.3762	32.916	34.0472	33.2148	23.9754	29.7665	15.6236	16.3149	13.7069	17.8269	12.0832	14.7249	19.7184	20.5802	18.9744	19.6763	14.0336	16.158	40.3666	37.8224	16.3478	14.2672	8.61424	9.30223
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR022780Dynein_light_int_chain
IPR027417P-loop_NTPase
Blast
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BLAST of TCONS_00029733 vs. Swiss-Prot (Human)
Match: DC2L1 (Cytoplasmic dynein 2 light intermediate chain 1 OS=Homo sapiens GN=DYNC2LI1 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.506e-25
Identity = 53/146 (36.30%), Postives = 90/146 (61.64%), Query Frame = 2 
Query:  179 MSSLTLWDFAQKKYKQELLDAGEENSNILSESHIIVCGAKDSGKTTLINKFLEKDDPAKPTIALDFCYGRRSKPNNMSGVKDVTNVSEIGGGKSTVKLFNAVISKQNLSGLVIVLVLDLSKPSEIWEVQHAILTQVCYVHL*SMMM 616
            M S TLW+ A+ + ++  ++  E +   ++E  +   G+K+ GKTT+I + L++D+P KPT+AL++ YGRR+K +N    KD+ +  E+GGG S + L +  I+   L    +VLVLDLSKP+++W     +L Q    H+  ++M
Sbjct:    1 MPSETLWEIAKAEVEKRGINGSEGDGAEIAEKFVFFIGSKNGGKTTIILRCLDRDEPPKPTLALEYTYGRRAKGHNTP--KDIAHFWELGGGTSLLDLISIPITGDTLRTFSLVLVLDLSKPNDLWPTMENLL-QATKSHVDKVIM 143
The following BLAST results are available for this feature:
BLAST of TCONS_00029733 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DC2L11.506e-2536.30Cytoplasmic dynein 2 light intermediate chain 1 OS... [more]
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