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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029731 ID=TCONS_00029731|Name=TCONS_00029731|organism=Clytia hemisphaerica|type=transcript|length=2864bp
AGTAAAGACCTTCAATCCCTCATTTAAATCCAATCCACAGAGGGGAGTCG
ATCATTACATTCTACTGAAGCAAACTAAAAGGACAACATTTACTTTCAAC
TTAGATTAATAAAGataaaacACATCAACAACATGTCAAGCTTACCTGAA
ATCACATACTCATTTACTGTTATCTTTTTGGTCATATCATTTTGCTCTTG
CCGAGCGCTCGAGCGGGAAGAAGCAGAAGGTCTAGCCTCAATGCGTCGAG
AAATCCCTCCAGGCTTGATGAAACAGTACAAACCCGCTGGTAAAAAACGT
ACGGCAGAAATCCCCAGAGCACAATTGGAAAGAGTTTTACAGGCATACCT
CAAAAAACAgcttgaaaatcaaaacaatgaaagaCTGGTTGCCCAGCTTT
TATCTTTACTCACAGAAGACAAACGCTCATCGCTTAAGCTACCGTTTTAC
AACATTTTACCAGGCTTCCAAAATATCGAAAAACGTGACGCGATACCGTT
CGTTCGTCCTGGGAAACGCAACATACAATCAAGGCGTAACCTAATGGCAG
ATCTTATCCCGCTTTTAATGATGAGCTCTGAACAAAATGGGGATAGTACA
AAAGAAGGTGATTTGTCGTTCAAAGATACTAAAACAATTTTGAGCTGAAT
GACATACATGAACAAAATGAGTCAAGCTTTAACGtgatacaaaaaatcaa
actgGAATCGGAAAAACGGCATAAAACAATAAGAATTGACCATTAGGAGT
AAGAACGATTTTCAAATTACACTCTCTGTAATGTAAACCTAtataatttg
aatctttctgtaattcgaactaaaagcATTAGTTCGaaactttctttaat
tcgaactaaaagcCTTAATCTCTTGAAGATTGAATTTTATCTActttaaa
tttggaaaaatttttctatctctctaattcgaatcccCCTGTTATTAGAA
AATTGTTGATATcttaaagatcgaattatagaaagttgTACTTATAACCT
ACGAAGCTGTTAAGCGAACGTTTATTTTACTAatttgaattttgtaaaaa
tgatgaaaagataggctacgtcatatctttcttcgtttcgagcgtaaaac
tcctacccTTAGTAAGCCCCTAAAAGCCTGGGgttgtctattgtgtagac
taatgAAAAGATAAATTAATTGTACACAATATGTAAACTTATAATCTCAT
GTTATTTACACAGTACTATTATACACAAAATTACGAAATAAATTTCAAGC
AtaaatgttttgtttgttttttcacgTGACCAACGTTGTCAAGGCTTATT
CTGCGCGCCGTGCGACTTTTTTTAATACACATCTAGCTGATGTCTaacta
gatctagcgctctagatgctttacaccgctattgagtactCGGGATCGAT
ATCAACTCCTGGGTTTATGTGTAAACCTCAGTACAAACAACGTTGTATAA
ACCATTAATGAAACAACGTGCTGAGACACAAACTACAGTGATCTAGCGTC
GTATTTCGTAAACCTTTTCAATTAAAAGCATTCTAAAACATTTTGCGACC
TGCAATCAACGATTTACGTCAGACCTGCATTCTTGGGGTCACCTGCATTC
TGAGGGTCCACCACACTGTAGTGTCAGTATTGCAATTCTTCATCTGGTGC
AGTTAAATCTAAATAGGATGATACATAATCGTTCTGGTAGTCTGGATCTT
GTTTATCACTCACTTCATAATGCGTTGAATCAACAGAATCTTGATTCGGT
GGTAGCTCTTTCATATTGTTTTTCGGTAAACCGGATTTTAAATCGGATTT
CAAAACATTCCCAGTATTGTTGAAGGGTCCTTTCGGGAACGATAAATCTt
cgcttaaaaattttttaCTGTATGGATATGACATTTTATTAGGTTGACAA
TAAACACCACTCATGTCTTGATAATTATTACCCCCGTCTATAGCTGAAGT
CATGTCTTGGTAACTACCCCCGTCTGTCGCTTGAAGATATTCATTAGAAT
CTTctaaatttgatgttttttgatatttttctatacTTTGATACGGGGGG
CTATCTAATGATTGGTATAATACTGATTGTGTATCGTCGTCAATGTTTTT
TGTGGATTCAACTTTAGAATCTTGTGTTTCTATGTCTAAACCTTGGTAAT
GTGAAATTTCATCTTGAATACATGAGAGTTTCGAGTACGACCGATCTTTT
CCTCGGAAATTGTCGGAAGTCGGGTCGTTCTCGGGATCAATCTCGTCGTC
AATTATGACAGCATGATTTAAATCATACATTTCAATACTCGCTGTACTGT
TTTTATGACTTGGGATAGGAGATGATAAGAGTGATCCTGCACCGGTCATG
GATGTTGATAAAGGGCTTCCTTGAGGTATAGATGTAGACAAGGGACCTGC
TGAAGAGAGATATGAGCTGCTTCCTCCATTTGGGATTGATGCCATGTTTG
GTTGAGTATAGTAGGTCCCTTCGTCATCGTTTGCAGGTTGGAATGTAAAC
GCTTTATTCGTAGATGCAAGACTTTCGTTTGATTTGCGGCCAGTGTTTGG
AGATGGCATATACCGAGTCTTGGCTGATGTCCCGTCTTGAAATTTGTGTA
ATTTTCCTTTAGATTTGTTTGACGAACGTAATAATTTTCGGTTATCTGAG
GCAGGGCATCTTGAGTTGATACAGCCCTCTTCATCGCAAGGAGCTGCCGG
GAGTGACCGAGTTTTCATCCAAGATGATGTCCTCCGTACTCGAACACTTA
ATCGTTGATGTTTCTGATGTTCACATTTCATCGATTCTTTCCCATCCTTC
TTACGGTCTTTCATAcaacaaaatttgataaaacacAATATGATAAAAAT
GAAGACCAGAACGG Run BLAST on NCBI transcript from alignment at sc0000768:19456..22725+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029731 ID=TCONS_00029731|Name=TCONS_00029731|organism=Clytia hemisphaerica|type=transcript|length=3270bp|location=Sequence derived from alignment at sc0000768:19456..22725+ (Clytia hemisphaerica)
AGTAAAGACCTTCAATCCCTCATTTAAATCCAATCCACAGAGGGGAGTCG
ATCATTACATTCTACTGAAGCAAACTAAAAGGACAACATTTACTTTCAAC
TTAGATTAATAAAGGTATACATTTTTATCTTGAAAACATTGGATAAGTTT
CTGCCATTATTTTAAATCCAGTGACATTTTTAGGCCACACTTTCAAGATA
TGTAGTAAATTACAGACAGAGCTAGAGACCTATAGACTTACTTTACATAT
CTTAAAGTTGGTGAATTTTCTTTGATActtcccagccggcacacaacgtt
atttcaacgttcatctaacgttatatggacagTAGCCTGGATatttttct
ctgtttttttctgaaattttaattGGTAAACCTATCATACTCTTTCCTAT
TCCGGTTTATTCTAATATTCTAATCttggttttatttttagataaaacAC
ATCAACAACATGACAAGCTTACCTGAAATCACATACTCATTTACTGTTAT
CTTTTTGGTCATATCATTTNATAAAACACATCAACAACATGTCAAGCTTA
CCTGAAATCACATACTCATTTACTGTTATCTTTTTGGTCATATCATTTTG
CTCTTGCCGAGCGCTCGAGCGGGAAGAAGCAGAAGGTCTAGCCTCAATGC
GTCGAGAAATCCCTCCAGGCTTGATGAAACAGTACAAACCCGCTGGTAAA
AAACGTACGGCAGAAATCCCCAGAGCACAATTGGAAAGAGTTTTACAGGC
ATACCTCAAAAAACAgcttgaaaatcaaaacaatgaaagaCTGGTTGCCC
AGCTTTTATCTTTACTCACAGAAGACAAACGCTCATCGCTTAAGCTACCG
TTTTACAACATTTTACCAGGCTTCCAAAATATCGAAAAACGTGACGCGAT
ACCGTTCGTTCGTCCTGGGAAACGCAACATACAATCAAGGCGTAACCTAA
TGGCAGATCTTATCCCGCTTTTAATGATGAGCTCTGAACAAAATGGGGAT
AGTACAAAAGAAGGTGATTTGTCGTTCAAAGATACTAAAACAATTTTGAG
CTGAATGACATACATGAACAAAATGAGTCAAGCTTTAACGtgatacaaaa
aatcaaactgGAATCGGAAAAACGGCATAAAACAATAAGAATTGACCATT
AGGAGTAAGAACGATTTTCAAATTACACTCTCTGTAATGTAAACCTAtat
aatttgaatctttctgtaattcgaactaaaagcATTAGTTCGaaactttc
tttaattcgaactaaaagcCTTAATCTCTTGAAGATTGAATTTTATCTAc
tttaaatttggaaaaatttttctatctctctaattcgaatcccCCTGTTA
TTAGAAAATTGTTGATATcttaaagatcgaattatagaaagttgTACTTA
TAACCTACGAAGCTGTTAAGCGAACGTTTATTTTACTAatttgaattttg
taaaaatgatgaaaagataggctacgtcatatctttcttcgtttcgagcg
taaaactcctacccTTAGTAAGCCCCTAAAAGCCTGGGgttgtctattgt
gtagactaatgAAAAGATAAATTAATTGTACACAATATGTAAACTTATAA
TCTCATGTTATTTACACAGTACTATTATACACAAAATTACGAAATAAATT
TCAAGCAtaaatgttttgtttgttttttcacgTGACCAACGTTGTCAAGG
CTTATTCTGCGCGCCGTGCGACTTTTTTTAATACACATCTAGCTGATGTC
TaactagatctagcgctctagatgctttacaccgctattgagtactCGGG
ATCGATATCAACTCCTGGGTTTATGTGTAAACCTCAGTACAAACAACGTT
GTATAAACCATTAATGAAACAACGTGCTGAGACACAAACTACAGTGATCT
AGCGTCGTATTTCGTAAACCTTTTCAATTAAAAGCATTCTAAAACATTTT
GCGACCTGCAATCAACGATTTACGTCAGACCTGCATTCTTGGGGTCACCT
GCATTCTGAGGGTCCACCACACTGTAGTGTCAGTATTGCAATTCTTCATC
TGGTGCAGTTAAATCTAAATAGGATGATACATAATCGTTCTGGTAGTCTG
GATCTTGTTTATCACTCACTTCATAATGCGTTGAATCAACAGAATCTTGA
TTCGGTGGTAGCTCTTTCATATTGTTTTTCGGTAAACCGGATTTTAAATC
GGATTTCAAAACATTCCCAGTATTGTTGAAGGGTCCTTTCGGGAACGATA
AATCTtcgcttaaaaattttttaCTGTATGGATATGACATTTTATTAGGT
TGACAATAAACACCACTCATGTCTTGATAATTATTACCCCCGTCTATAGC
TGAAGTCATGTCTTGGTAACTACCCCCGTCTGTCGCTTGAAGATATTCAT
TAGAATCTTctaaatttgatgttttttgatatttttctatacTTTGATAC
GGGGGGCTATCTAATGATTGGTATAATACTGATTGTGTATCGTCGTCAAT
GTTTTTTGTGGATTCAACTTTAGAATCTTGTGTTTCTATGTCTAAACCTT
GGTAATGTGAAATTTCATCTTGAATACATGAGAGTTTCGAGTACGACCGA
TCTTTTCCTCGGAAATTGTCGGAAGTCGGGTCGTTCTCGGGATCAATCTC
GTCGTCAATTATGACAGCATGATTTAAATCATACATTTCAATACTCGCTG
TACTGTTTTTATGACTTGGGATAGGAGATGATAAGAGTGATCCTGCACCG
GTCATGGATGTTGATAAAGGGCTTCCTTGAGGTATAGATGTAGACAAGGG
ACCTGCTGAAGAGAGATATGAGCTGCTTCCTCCATTTGGGATTGATGCCA
TGTTTGGTTGAGTATAGTAGGTCCCTTCGTCATCGTTTGCAGGTTGGAAT
GTAAACGCTTTATTCGTAGATGCAAGACTTTCGTTTGATTTGCGGCCAGT
GTTTGGAGATGGCATATACCGAGTCTTGGCTGATGTCCCGTCTTGAAATT
TGTGTAATTTTCCTTTAGATTTGTTTGACGAACGTAATAATTTTCGGTTA
TCTGAGGCAGGGCATCTTGAGTTGATACAGCCCTCTTCATCGCAAGGAGC
TGCCGGGAGTGACCGAGTTTTCATCCAAGATGATGTCCTCCGTACTCGAA
CACTTAATCGTTGATGTTTCTGATGTTCACATTTCATCGATTCTTTCCCA
TCCTTCTTACGGTCTTTCATAcaacaaaatttgataaaacacAATATGAT
AAAAATGAAGACCAGAACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029731-exon-sc0000768-1491911889:19456..19569 | TCONS_00029731-exon-sc0000768-1491911889:19456..19569 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1510915933:19456..19569 | TCONS_00029731-exon-sc0000768-1510915933:19456..19569 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1575043694:19456..19569 | TCONS_00029731-exon-sc0000768-1575043694:19456..19569 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1491911889:19897..19914 | TCONS_00029731-exon-sc0000768-1491911889:19897..19914 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1510915933:19897..19914 | TCONS_00029731-exon-sc0000768-1510915933:19897..19914 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1575043694:19897..19914 | TCONS_00029731-exon-sc0000768-1575043694:19897..19914 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1491911889:19994..22725 | TCONS_00029731-exon-sc0000768-1491911889:19994..22725 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1510915933:19994..22725 | TCONS_00029731-exon-sc0000768-1510915933:19994..22725 | Clytia hemisphaerica | exon |
| TCONS_00029731-exon-sc0000768-1575043694:19994..22725 | TCONS_00029731-exon-sc0000768-1575043694:19994..22725 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000768 | supercontig | sc0000768:19456..22725 + |
Blast
The following BLAST results are available for this feature:
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