TCONS_00029728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029728
Unique NameTCONS_00029728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length239

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029728 ID=TCONS_00029728|Name=TCONS_00029728|organism=Clytia hemisphaerica|type=transcript|length=239bp
TTCTAAACAATCCTACAGTTGCGTCAAAAACAACTATGGGAATATTGCGa
taaacaaacatcaattttaACTTCTCCATCGAAATACAAATCCTCTACCT
ACAGTCTCTTGATAAAATGTAAAACAAGATCAAGATCGCCCCAAAGAAGA
AGGAGGTCTCGATCAAGAAGCAGATCTAGAGATAGAAAATACCAACACCA
CTGACACCCTGATGTCATCTTGGCCAGCCTTCCACGTNN
Run BLAST on NCBI

transcript from alignment at sc0000768:1..777+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029728 ID=TCONS_00029728|Name=TCONS_00029728|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0000768:1..777+ (Clytia hemisphaerica)
TTCTAAACAATCCTACAGTTGCGTCAAAAACAACTATGGGAATATTGCGa
taaacaaacatcaattttaACTTCTCCATCGAAATACAAATCCTCTACCT
ACAGTCTCTTGATAAAATGTAAAACAAGGTTTGTACACAGACTGCAGACA
AGAAAGTGAACAAAGGGTTAATACAAGGTCAAATCAAGCAAAGTAGAGTC
CCAACAAAACATGAGTCGTTTCTAATAAGATTTAAATATACAGAAtctaa
ttaaaatgtttttccagtgttttgTGAGCTNTGAACAAAGGGTTAATACA
AGGTCAAATCAAGCAAAGTAGAGTCCCAACAAAACATGAGTCGTTTCTAA
TGAGATTTAAATATACAGAAtctaattaaaatgtttttccagtgttttgT
GAGCCTTTTATATCATGTTAATTTATGAATATGAAATAACTTCAACTATT
AGATCAAGATCGCCCCAAAGAAGAAGGAGGTCTCGATCAAGAAGCAGATC
TAGAGATAGGTACGTTTAATGTTAATGATTCTTATCTTTGGTTCATTTAA
TAAGCCAGAACCTACACTTTAAAGTAGCTGAAAGTTTAGTATTTATTCTT
TAAATCGTTGAGCTTAATTTACTATTTCGAAAGGTCAAATATTTAATCTC
CATTCAAACTAGTGACATTAACAGATTTTATCTCTCCAATctcttgaaaa
taaatttgattcttCTTGAATAGAAAATACCAACACCACTGACACCCTGA
TGTCATCTTGGCCAGCCTTCCACGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016982XLOC_016982Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029728-exon-sc0000768-1491911889:1..128TCONS_00029728-exon-sc0000768-1491911889:1..128Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1510915933:1..128TCONS_00029728-exon-sc0000768-1510915933:1..128Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1575043694:1..128TCONS_00029728-exon-sc0000768-1575043694:1..128Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1491911889:453..509TCONS_00029728-exon-sc0000768-1491911889:453..509Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1510915933:453..509TCONS_00029728-exon-sc0000768-1510915933:453..509Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1575043694:453..509TCONS_00029728-exon-sc0000768-1575043694:453..509Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1491911889:724..777TCONS_00029728-exon-sc0000768-1491911889:724..777Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1510915933:724..777TCONS_00029728-exon-sc0000768-1510915933:724..777Clytia hemisphaericaexon
TCONS_00029728-exon-sc0000768-1575043694:724..777TCONS_00029728-exon-sc0000768-1575043694:724..777Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000768supercontigsc0000768:1..777 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.4805	43.6142	45.634	67.5784	925.345	800.258	301.903	369.479	160.986	147.604	115.2	108.796	154.954	152.134	121.615	140.681	206.753	186.69	46.0029	50.5026	89.6954	69.572	54.7295	54.5364	313.027	306.404	15.8455	32.5245	45.1114	56.9463
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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