TCONS_00029718 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029718
Unique NameTCONS_00029718
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1175

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029718 ID=TCONS_00029718|Name=TCONS_00029718|organism=Clytia hemisphaerica|type=transcript|length=1175bp
ggaAAATTCTCTAATTATGAAGCAAGGTCTAATCTTTAGACTGAAATTGG
ACTTTTTCTTGATATATCTAAAGAAGTATAGCTGGCTCCAAAGCCTGAAG
AAGCGATCACagACAAACTGATGGATATTAGACAAAGTGGAATGACGTAC
AATGTTTGACAACAAATTTCCATGTTTGGATGTAACAGAATTAATTGCGG
TTAGAATCAACAAAAACACCTTTACTGAAAGTATGAATCGTCAAAAGATG
GAAACGAAATGTTGGAAATGTTTTGGGGTCCTTCAAGATGAGAAAGTTCG
GTTCCAGGAGAAACAGTACCATCCACGATGTTATCATTGCGACATTTGCA
AAAAATCTCTTCAAAatCAAATATGTCACGAAGAGGGAGGAAAACTCTAT
GATAAAGGATGTTTTAATTTGCTACAACAAGATAAATGTTCTCGCTGTAA
AACACTAATCAAATCGAACGGGCAAACTTACCGAGGGAAATCGTACCACG
AAGAGTGCTTCACTTGTCAATCATGTCGTGCTTCCTTGGCTGGTTGTCGC
TTCCacgaggacgacggtaaattcTTTCACGAGGGTCAATGTTATGAGAG
CTTCAATGCGTACATATGCAACCAATGTAGACAACAAATAAATGGCAATG
ATATTGAGTTCATGATGTTTCAAGGAAAATATTTCCACAACAAATGTTTC
GCGTGTGAAGAATGTCATCAATCACTGGCtggagaaaaattcaaaattat
gaTCGGTCGCAGATATTGTAATAGATGTAGATAAAATTTCACTTCTAACT
AATTTATGGAGAATAAGAGTGATCGCATGCTCTGAAGATACATCATTATc
agtttttttatttcgatttatGGACTCTATATTCTACGTATATAATAAGT
AGGATGTTTTCCCACGATTGATCTGGTATATAGAATTTGAGGTCTTAAGG
TTAGCTTCTTTTACCTAGGACTAGATTATTCATAAATTTCATGAAATAAG
ATATTCGTTGTTTTTCCCGCCCTGCCTAATATTTGCTAAAATTCAAGTAT
AGGTCATTGTATTACAGACTTTGCTTGTACAGGGAAACAtaattttgaaa
tctaaaatttaaaatattcagtaaaaacagggtttttacaaaaatatcat
aaaataaaCTTGAAGAATGGTGGAA
Run BLAST on NCBI

transcript from alignment at sc0000764:78801..83919-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029718 ID=TCONS_00029718|Name=TCONS_00029718|organism=Clytia hemisphaerica|type=transcript|length=5119bp|location=Sequence derived from alignment at sc0000764:78801..83919- (Clytia hemisphaerica)
GGAAAATTCTCTAATTATGAAGCAAGGTCTAATCTTTAGACTGAAATTGG
ACTTTTTCTTGATATATCTAAAGAAGTATAGCTGGCTCCAAAGCCTGAAG
AAGCGATCACAGGTATATTTTTTTATAATGTTATTCCAACCTGTAAAACC
TACGATAAAATACTTAGCATCTCGTTCTTACTGTACATAGAAACATCGAT
CAAAATAGTTTATTTTTCTTGTTTCATTACAGACAAACTGATGGATATTA
GACAAAGTGGAATGACGTACAATGTTTGACAACAAATTTCCATGTTTGGA
TGTAACAGAATTAATTGCGGTAATAAAAGTTTCCTAATGAATGTCGTCAA
TGTTAAAGTTATGTTTACACTTTCGCATTGATTTTGACAATTCAGGCTTT
CTAGAAAACATTTTTCGTGGCATCTTTATTGAGATTTCTTTGAAATAATT
TTTAAGCAGAAAGAAAACGTAGTTGACCATTAACCTCAGAGTAATTTTTT
GCTGATGAAATTGTGTTCAGAGGGAATTCAGTTTTCAAACCGCTGATATA
CGATAATTTTGATATGCATGCAAAGTGTAAACTAGACCTTATTATCAACG
AAATTAAAAGAAAGATAATAATTTTTTTCAGGAATTTGTTTACTTATAAG
GCAACAATATTGAATTCATAAAGCTTTGCAACCACCGAGGATTTCATCTG
GTTTCCTTTATTTGTGTAAACCTTAGTTTGAAATTTTCTGTCAACAAACA
CATAATGATTAGTTCACTGTTGAAAAATTGTTTCATTTTCTTTAGACTTG
CTTTATTTTGGTGACAGACTCTAAAGTGCTGATAACTATACTAACAATTA
AATTTGAAACAGAGTTTGTTAAAGAATATTGTTCCTCGTTCTTGTTTGAA
GATTTTTCTTTCAGAGGTTTTTATATCAAATTTTCAGGTTAGAATCAACA
AAAACACCTTTACTGAAAGTATGAATCGTCAAAAGATGGAAACGGTGAGT
TAAGTAATATTTGATAACTGATGATGGCGTAAGAGGAAAAGCTTTTTATC
TTGAAATATAATTTTTACTTTATCTAAAAACAACATTGCGAACGTCTCAC
TCAATTCCTCGATAATCATTTTCACCTTTCAGTTAACCTCTTTAGACTAA
GGGTTAGTACCAGGTACAAAAATTAGGCCATTTATAGCATGCAAACGCTC
GTAAGCCTTCGATCACTCGAGCCAATTTTGAATTGGTCTCAATATGGTTG
AGTGAGTCATTGAGATTTCAATCGTATTTTTTATCCCCGCTGTAGGAAAA
AGTTTAACCGGGGCTGTGAGACAGGGTGTTTGAAAGTAGGTTTATTTTCA
AGGATTTTAATCTCATTGCCAGAGTTGAACAAAATGTGTGTTCCCTCTGC
TTTTTACCGTTGATGGCTTTATATTTCCAAACCTCTTCTTTTTCGTGCTT
CTGGTTGTCTTCATCATGTTCTTATAATTCGTTTACAGAAATGTTGGAAA
TGTTTTGGGGTCCTTCAAGATGAGAAAGTTCGGTTCCAGGAGAAACAGTA
CCATCCACGATGTTATCATTGCGACATTTGCAAAAAATCTCTTCAAAGTG
AGTTACTCCTTATTTGTTTGAACCATATCGAGAGAACTTCCATAAGGATT
GGAAATCGATGCTAAAGCTGACTCTATTTAGTCATCGAATAACTCTACTC
CTACAATCGTTGCCAACATATTATGGCACATTTTCGGTGTCAAATTTAGA
TACATTTAAATACCCTCCCCTCCCCTCCGAACAATGTTGGTGGGAAAGAA
ATATTGCTTGGCCGGTCCTTCAGCTCACCCCGACAACATTGTGTGTGCTC
GGGTAAGTTATGGCGNTTCCTCGTTCTTGTTTGAAGATTTTTCTTTCAGA
GGTTTTTATATCAAATTTTCAGGTTAGAATCAACAAAAACACCTTTACTG
AAAGTATGAATCGTCAAAAGATGGAAACGGTGAGTTAAGTAATATTTGAT
AACTGATGATGGCGTAAGAGGAAAAGCTTTTTATCTTGAAATATAATTTT
TACTTTATCTAAAAACAACATTGCGAACGTCTCACTCAATTCCTCGATAA
TCATTTTCACCTTTCAGTTAACCTCTTTAGACTAAGGGTTAGTACCAGGT
ACAAAAATTAGGCCATTTATAGCATGCANAATTTTTAGATCGCATTAGTC
GACAGAAAATGACCAAACAAATGACTGAACATGAAGGGTACTATGATGTA
GTTTCTAACCTGATGTGTAACCTAATTATTTTTTCCCCGATTTTCGCGAA
AAACCGCAAAAACTGATTATTACGTAATAATCGATGACGTCATCAAAACT
AAAAATTGAATTTCTCAAGAATGGTTTTTCCAAGTGTCTTCAAACTTTCA
CCAAAGATGTATCTTACTAAAGTCGATCATTTGAAAAAAAATTTTTTCGA
AATTTTGATGACGTCAGCAGAAAATAGGATTTTTCGTTTTGTACTAATTT
CTGCTGACGTCATCAGAATTTTGAAATATTTCTTTTTTCAAATGATCAAC
TTTAGTAAGATACATCTTTGGTGAAAGTTTGAAGACAATTGGATAAACCA
TTCTTGAGAAATTCAATTTTTAGTCTTGATGACGTCGTCGATTATTACGT
AATAATCAGTTTTTGCGGTTTTTCGCGAAAATCAGCGAAAAAACAATTAG
GTTACACATCAGGTTGGAAACTACATCATAGTACCCTTCATGTTCAGTCA
ATTGTTTGGCCATTTTCTGACGACTAATGCGATCTAAAAATTATGGTAAT
TTTCAGTTTTTGAGACATGCCATAACTTACCCGAGTGGGGGGGAGGGATA
TGCTCATTTTTATGTTTTGTGTCATAGGTTTTTTCATTGATTGTAGATCC
CCACTGGGGGTATTCAATCAAGAAAAAACGTGACGCTGACTTACCCTTGC
CTGTTGAATGGCCGTTTATCAATTCAATACAAAACTTAGCCTTCAATTCT
ATCTAGGCCCTGTTCTATTAAAGCTTTTTTTAGCCTTTTTTCAATTCGAT
AGACCATTAGTTTGAAGGGGCGACTGACATTCTAAAAACGGACTTCTTCC
GCCGTGAAGTAAGGTCTGATAAGGCAAGTAAACTCCATTAACAATTGGAG
GTTGAGTAAATTATACAGGTCTTTAGAGAGTTTTTTTGGTATGGTAAACT
ACCAAATTCCTTTAATTTTTTTTTAACGAGATAATTCCCATTTTCTCATT
TTTAGATCAAATATGTCACGAAGAGGGAGGAAAACTCTATGATAAAGGAT
GTTTTAATTTGCTACAACAAGATGTAAGTACGAGAGTATGTTAATTCTGC
TACGAAAGTACAACGTCCCCGGGGACTACTACCCTTGCCGACGGACGAAG
GTTTTCCGCTAAGGCTCAAATATTGGAAACCTACGTTGGACTCATTTTTT
GAACAGTGATCCTGAATGGAAATGAAATTCCAAAACGTTCACAAAATGTT
CCGTTTATTTCCAAAAATCTTCCACAGCGTTGCAAAATTCCCCTGAAAAT
TTACCCTACGAAGGACTTTCTTTTTTGGTATTTTTGCGACCCTACCAGGG
GTTCAAGGAGGTGAAAAAAAGGTATCCTGACCAGTCCCACATTGCCGTAC
CCCTTTTTCCCCAAGTATGTATCAGCCCTGAAGCAACGACCATAGTCTGC
TCAACATTGATATCACCAGCAACACACTCTGCTCTACAGGGATATAGTGA
ATCTTTGATGATACATTTCGTTCTTCCATATTATGCGATTTTAACGCCTT
TGGCGTGTTATATCGTTAAATTTGTAGTGATAGCAAAAGGCTCGTTACTA
GTGGCAATGTACTGTTTTGAATTGTAACAAATGATATTTTATTTGCTTCA
TTATTATAGAAATGTTCTCGCTGTAAAACACTAATCAAATCGAACGGGCA
AACTTACCGAGGGAAATCGTACCACGAAGAGTGCTTCACTTGTCAATCAT
GTCGTGCTTCCTTGGCTGGTGAGTGAGAAAATTGGGACACGTTTGTAAAT
CTACCGGGTGCACCTGTATACTCTTTTTGGTGCACCCGGTAGCTCTGTCG
ATTTAAAGTCTGTTAAAAAAATAAGGTGTTCAATGATGGTGATCTTCTTG
GCATATTCTTAATTCTTTATCATGAATATTCTTAGAGTAAGTAAGTCTGC
GACCGCAGTCGGAGGTGACCTAAAGGCTCCTCTTTCTCCCTGGATTGCTC
CACTTGCCCTTGATCCTTCTCTTAATTGCATCAGTCTGAAAGGCGTCAAG
TACCATTTTTGTATTATATAACTACGAAGTCTTTGGTATACCCAGCCGAT
GATTAAACCTACGAGCTTGCGCACCGTAGCCGGATGCTCCACTGCACTAC
GGTCGCATTCTTATAAAAGAAAAAGCGTGCATAAAGTTCGAGTATTTCTC
CTATGGAAGTCGTCATCTCCTCTTTTCACTTTTAAGGTTGTCGCTTCCAC
GAGGACGACGGTAAATTCTTTCACGAGGGTCAATGTTATGAGAGCTTCAA
TGCGTACATATGCAACCAATGTAGACAACAAATAAATGGCAATGATATTG
AGTTCATGATGTTTCAAGGAAAATATTTCCACAACAAATGTTTCGCGTGT
GAAGAATGTCATCAATCACTGGCTGGAGAAAAATTCAAAATTATGATCGG
TCGCAGATATTGTAATAGATGTAGATAAAATTTCACTTCTAACTAATTTA
TGGAGAATAAGAGTGATCGCATGCTCTGAAGATACATCATTATCAGTTTT
TTTATTTCGATTTATGGACTCTATATTCTACGTATATAATAAGTAGGATG
TTTTCCCACGATTGATCTGGTATATAGAATTTGAGGTCTTAAGGTTAGCT
TCTTTTACCTAGGACTAGATTATTCATAAATTTCATGAAATAAGATATTC
GTTGTTTTTCCCGCCCTGCCTAATATTTGCTAAAATTCAAGTATAGGTCA
TTGTATTACAGACTTTGCTTGTACAGGGAAACATAATTTTGAAATCTAAA
ATTTAAAATATTCAGTAAAAACAGGGTTTTTACAAAAATATCATAAAATA
AACTTGAAGAATGGTGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016975XLOC_016975Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029718-exon-sc0000764-1575043694:83808..83919TCONS_00029718-exon-sc0000764-1575043694:83808..83919Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:83601..83687TCONS_00029718-exon-sc0000764-1575043694:83601..83687Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:82926..82982TCONS_00029718-exon-sc0000764-1575043694:82926..82982Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:82323..82431TCONS_00029718-exon-sc0000764-1575043694:82323..82431Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:80597..80664TCONS_00029718-exon-sc0000764-1575043694:80597..80664Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:79902..80010TCONS_00029718-exon-sc0000764-1575043694:79902..80010Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1575043694:78801..79433TCONS_00029718-exon-sc0000764-1575043694:78801..79433Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:83808..83919TCONS_00029718-exon-sc0000764-1510915933:83808..83919Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:83601..83687TCONS_00029718-exon-sc0000764-1510915933:83601..83687Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:82926..82982TCONS_00029718-exon-sc0000764-1510915933:82926..82982Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:82323..82431TCONS_00029718-exon-sc0000764-1510915933:82323..82431Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:80597..80664TCONS_00029718-exon-sc0000764-1510915933:80597..80664Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:79902..80010TCONS_00029718-exon-sc0000764-1510915933:79902..80010Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1510915933:78801..79433TCONS_00029718-exon-sc0000764-1510915933:78801..79433Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:83808..83919TCONS_00029718-exon-sc0000764-1491911889:83808..83919Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:83601..83687TCONS_00029718-exon-sc0000764-1491911889:83601..83687Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:82926..82982TCONS_00029718-exon-sc0000764-1491911889:82926..82982Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:82323..82431TCONS_00029718-exon-sc0000764-1491911889:82323..82431Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:80597..80664TCONS_00029718-exon-sc0000764-1491911889:80597..80664Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:79902..80010TCONS_00029718-exon-sc0000764-1491911889:79902..80010Clytia hemisphaericaexon
TCONS_00029718-exon-sc0000764-1491911889:78801..79433TCONS_00029718-exon-sc0000764-1491911889:78801..79433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000764supercontigsc0000764:78801..83919 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.5434	4.86512	2.80566	2.77672	5.31597	3.22555	5.01463	4.74462	11.9119	11.6789	15.0111	7.24931	36.9677	47.9059	21.8152	13.4288	21.367	26.9807	9.13377	10.7911	14.2439	11.867	8.58053	11.0432	21.9421	40.2934	14.7904	16.3128	1.69159	5.38265
Blast
[Close]
BLAST of TCONS_00029718 vs. Swiss-Prot (Human)
Match: FHL3 (Four and a half LIM domains protein 3 OS=Homo sapiens GN=FHL3 PE=1 SV=4)

HSP 1 Score: 77.7962 bits (190), Expect = 3.617e-16
Identity = 54/214 (25.23%), Postives = 97/214 (45.33%), Query Frame = 2 
Query:  146 RTMFDNKFPCLDVTELIAVRINKNTFTESMNRQKMETKCWKCFGVLQD--EKVRFQEKQYHPRCYHCDICKKSLQNQICHEEGGKLYDKGCFNLLQQDKCSRCKTLIKSNGQTYRGKSYHEECFTCQSCRASLAGCRFHEDDGKFFHEGQCYESFNAYICNQCRQQING-NDIEFMMFQGKYFHNKCFACEECHQSLAGEKFKIMIGRRYCNRC 778
            R++ D  F C D +EL+      + F+         ++C  C   +     K+ +  + +H  C+ C  C++ L ++    + G  Y   C+      +C+RC   +   G TYR + +H EC  C  C+  LAG +F   D   +    C+    A  C+ C++ I G    +++ F+ +++H+ CF+C  C  SL G+ F     +  C  C
Sbjct:   73 RSLADEPFTCQD-SELLCNDCYCSAFS---------SQCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVPDKGAHYCVPCYENKFAPRCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTSRDEDPYCVA-CFGELFAPKCSSCKRPIVGLGGGKYVSFEDRHWHHNCFSCARCSTSLVGQGFVPDGDQVLCQGC 275
The following BLAST results are available for this feature:
BLAST of TCONS_00029718 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FHL33.617e-1625.23Four and a half LIM domains protein 3 OS=Homo sapi... [more]
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