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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029699 ID=TCONS_00029699|Name=TCONS_00029699|organism=Clytia hemisphaerica|type=transcript|length=3022bpRun BLAST on NCBI transcript from alignment at sc0000764:1196..26155+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029699 ID=TCONS_00029699|Name=TCONS_00029699|organism=Clytia hemisphaerica|type=transcript|length=24960bp|location=Sequence derived from alignment at sc0000764:1196..26155+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029699 vs. Swiss-Prot (Human)
Match: RPOM (DNA-directed RNA polymerase, mitochondrial OS=Homo sapiens GN=POLRMT PE=1 SV=2) HSP 1 Score: 360.147 bits (923), Expect = 1.191e-105 Identity = 184/488 (37.70%), Postives = 280/488 (57.38%), Query Frame = 1
Query: 262 QGIPVNFICRKLGHLIYNRFTSKYKGEAGVSEKVQRIMEEYT---SSEEWIDKSLLPRQKWKEISLSLPYLASEQALPNVWPTKLRAMASSVLLDILKKVAEIDTKMFVKSNFTKIEQALSHHHELSGGPNRIGVLKFHPVVGRLFKSYLSQMGELSFESNKLPMLIPPRPWTNPTSGAYMLLHSDLVRTVTGQYKLNQLQSAAEDHQMDKIFDSLNYLGNTAWKINEPILDMMITLYNTTGDIKLDIIGP----------NLPNIERVNAKRKMTWEERKSRQRKKKLYHELFALRMDILYKLSVANHFRSETFWIPSNLDFRGRVYPIAPHCSHIGSDISRCLLMFAEGKKLGPNGLNWLKVHLVNIHGQLKKSSLEERINYADQHLEEIFDSADKPFEGEKWWQGGSDPWQTLVACIEVTKAIRSGDPENYISHIPIQQDGSCNGLQHYATLGRDEYGAKQVNLSPADRPADVYSEVASLVESAR 1686
QG + R+L ++R + + +G + +Q +Y +S+ + + LPRQ W+E L P EQ WP ++ +L ++L + ++ + +++ L H + +IG+LK HP +L + + L+FE+ +PML PP PWT+P SGA++L + L+RTV G + +L + D+L LGN AW++N +LD+++ L+ G +L + P +LP+ +A E R+ +K+ E+ +LR + LY+LS+A H R FW+P N+DFRGR YP PH +H+GSD++R LL FA+G+ LGP+GL+WLK+HLVN+ G K+ L +R+ +A++ +++I DSAD+P G KWW G +PWQTL C+EV A+R+ DP Y+SH+P+ QDGSCNGLQHYA LGRD GA VNL P+D P DVYS VA+ VE R
Sbjct: 493 QGESFTTLARELSARTFSRHVVQRQRVSGQVQALQNHYRKYLCLLASDAEVPEPCLPRQYWEE--LGAPEALREQP----WPLPVQMELGKLLAEMLVQATQMPCSLDKPHRSSRLVPVLYHVYSFRNV-QQIGILKPHPAYVQLLEK--AAEPTLTFEAVDVPMLCPPLPWTSPHSGAFLLSPTKLMRTVEGATQHQELLETCPPTALHGALDALTQLGNCAWRVNGRVLDLVLQLFQAKGCPQLGVPAPPSEAPQPPEAHLPH----SAAPARKAELRRELAHCQKVAREMHSLRAEALYRLSLAQHLRDRVFWLPHNMDFRGRTYPCPPHFNHLGSDVARALLEFAQGRPLGPHGLDWLKIHLVNLTGLKKREPLRKRLAFAEEVMDDILDSADQPLTGRKWWMGAEEPWQTLACCMEVANAVRASDPAAYVSHLPVHQDGSCNGLQHYAALGRDSVGAASVNLEPSDVPQDVYSGVAAQVEVFR 967 HSP 2 Score: 173.711 bits (439), Expect = 5.682e-44 Identity = 85/181 (46.96%), Postives = 119/181 (65.75%), Query Frame = 3
Query: 1731 LQDWLTISAAQIALTGNCVDWTTPLGLPIIQPYHRET-TENISTPLQIVTTTQSYDYTQIPHLTKQKGGFPPNFVHSLDSTHMMMTSLRCQDNHLTYASVHDSFWTHAIDVEKMNKYCREEFVALHSLPILEDLKKHFEEKYAGLPLRKPLKDGRTVAHFDALPDKGSFVPEKVIDSVYFF 2270
+Q WLT SA I+ G+ V+W TPLG+P+IQPY ++ + I +Q +T T + D ++ P+ KQK GFPPNF+HSLDS+HMM+T+L C LT+ SVHD +WTHA DV MN+ CRE+FV LHS PIL+DL + +++ P +K L+ + A+P G+F E+V S YFF
Sbjct: 1050 IQHWLTESARLISHMGSVVEWVTPLGVPVIQPYRLDSKVKQIGGGIQSITYTHNGDISRKPNTRKQKNGFPPNFIHSLDSSHMMLTALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRFCSEP-QKILEASQLKETLQAVPKPGAFDLEQVKRSTYFF 1229 The following BLAST results are available for this feature:
BLAST of TCONS_00029699 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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