TCONS_00029694 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029694
Unique NameTCONS_00029694
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length786

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029694 ID=TCONS_00029694|Name=TCONS_00029694|organism=Clytia hemisphaerica|type=transcript|length=786bp
GTTTTCCGTTTCAAACGAAAAACCTTGGTTTGACAACTACTGAGGATCTG
ATAGTATCTTTCTATCACTGCAACCGTAGGTGATTGGTTCAAAAGTAGAT
AGGCTTTTGAgaaatcatgaacatataaacgaccgGACAGTCATTTCCTT
TGTATAAAGCACTGTTAGCTTCGTTGTTGTCTGTACAATTTCAAAactca
ttgccgtagagggtctgttgtcattgtcttttctcgtTAAAGATTTCTCA
AACTGGCCGCTGAGATGGaatgttggtgagagaggggagacgatgagaga
agtgttgctatttataagtCATACTTCaccgcagaggtctccgtacggta
ATTTTcctatcaaacagacaatgcgcacaaagtgtactacgaagcgatac
aAGTGGAagacactctggtacagagtagctTCGTTGCtgcctcgttaaaa
tcataaaatgaaacaGACGGCAATTTGTAGTGCTGACagtttaatgtaaa
ttttttgaccATTCAGAAAAGCCTCAAGATCtgattttctttgaattaca
CTAATCACATGCGTCCAACGAAataggctattccagaaaagCCGTTTATA
GtgggtgaaaaattgaaatgtccAGAGGTAGatcattgaaaaataatata
tcctccaccaaccatgcacaatttttttctggaagagcccaatgttaAAC
GGATATCATACGATATCGAAAGATTATTATCCTTTACATTGTTATGTTTT
GTCATATCAAAAACTATTCCAGAAATACGCTCTACC
Run BLAST on NCBI

transcript from alignment at sc0000763:28100..28885

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029694 ID=TCONS_00029694|Name=TCONS_00029694|organism=Clytia hemisphaerica|type=transcript|length=786bp|location=Sequence derived from alignment at sc0000763:28100..28885 (Clytia hemisphaerica)
GGTAGAGCGTATTTCTGGAATAGTTTTTGATATGACAAAACATAACAATG
TAAAGGATAATAATCTTTCGATATCGTATGATATCCGTTtaacattgggc
tcttccagaaaaaaattgtgcatggttggtggaggatatattatttttca
atgatCTACCTCTggacatttcaatttttcacccaCTATAAACGGctttt
ctggaatagcctatTTCGTTGGACGCATGTGATTAGtgtaattcaaagaa
aatcaGATCTTGAGGCTTTTCTGAATggtcaaaaaatttacattaaactG
TCAGCACTACAAATTGCCGTCtgtttcattttatgattttaacgaggcaG
CAACGAagctactctgtaccagagtgtctTCCACTtgtatcgcttcgtag
tacactttgtgcgcattgtctgtttgataggAAAATtaccgtacggagac
ctctgcggtGAAGTATGacttataaatagcaacacttctctcatcgtctc
ccctctctcaccaacattCCATCTCAGCGGCCAGTTTGAGAAATCTTTAa
cgagaaaagacaatgacaacagaccctctacggcaatgagtTTTGAAATT
GTACAGACAACAACGAAGCTAACAGTGCTTTATACAAAGGAAATGACTGT
CcggtcgtttatatgttcatgatttcTCAAAAGCCTATCTACTTTTGAAC
CAATCACCTACGGTTGCAGTGATAGAAAGATACTATCAGATCCTCAGTAG
TTGTCAAACCAAGGTTTTTCGTTTGAAACGGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016965XLOC_016965Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029694-exon-sc0000763-1491911889:28100..28885TCONS_00029694-exon-sc0000763-1491911889:28100..28885Clytia hemisphaericaexon
TCONS_00029694-exon-sc0000763-1510915933:28100..28885TCONS_00029694-exon-sc0000763-1510915933:28100..28885Clytia hemisphaericaexon
TCONS_00029694-exon-sc0000763-1575043694:28100..28885TCONS_00029694-exon-sc0000763-1575043694:28100..28885Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:28100..28885 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.124918	0.301695	0.655538	1.15704	0.0859464	0.131968	0.0826124	0.223214	0	0.0650385	0	0.0418299	0.0414878	0.0429193	0	0.263847	0.139212	0.145294	0.269098	0.138711	0	0	0.0708492	0.067109	0.209508	0	0	0.182628	0.34167	0.141163
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029694 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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