TCONS_00029687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029687
Unique NameTCONS_00029687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4065

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029687 ID=TCONS_00029687|Name=TCONS_00029687|organism=Clytia hemisphaerica|type=transcript|length=4065bp
AATCAAGCTATGAGAAGCTTTGTGTGTGGTTGCGTCAATATGGAGTTTCA
TACTTAGACAGTTTTGGTCTAAACTTTCACAAATCAAATTCTATCAACTT
TCAACTTTTGTGCACAGTCTTTCACAGTTTCAACATACTGGCTACCTGtt
tgaacaatcGTATTCACTTCAATCGAAGTTCCAAACTGTGTCAGTTTATT
TCCGTGCACAACAGAGATTTCGTTCCAAGATGGAAGTCACCAACATAACC
TATCTTACTTTATATGGATTACTTTTCATCTTCGGTGTCACTGGAAACAC
ACTCATTATCatattcttcaaattcaaagacaaaacaacaaaaccaaaTT
ATCGAATCTTGATCATAGCATTGGCTTTCATAGATCTCTTATCATCCATC
TATAACACCATTTTCTATCAAATACCAATGGAGCTACAGAAATTGATTAT
ACCATGGTACCTAGGCCATTTCATGTGTCATTACTCAAGCATTATTTCCT
TTTCTATGACTGTGGTTTCAAGCAATATCCTTTGTCTTATGGTTGGTGTC
AGATACCGTCAACTTGCATATCCGTTCGCGGAAAGTTTGAAGAAACGGTA
TCTGTTTCTAGGTATTCTGATTGGGATAGCAATTTCGTTCGGGACAGCAT
TAGCAGTACAAAAACCTATGGTTTTGACACATGGTTTTTGTGGTTTTGAT
TTTGGTGGTGATTTCTTTAATGACACTAAAATAAGAGATCAGTTTTATCA
ACAAACGGCTGTTACAAGTTTTGTCACAATCTCAATTCAAATGTTTTTAC
CCTTACTTATTATCTTGTACATGACGTATTTAACTTCAAGATTAATTCAC
CATCGTAAAAAGATTCGCTTCAACAGGAACAAACAATTCCAATTAGCAGA
TAAGAAAACCGATCGTCTCATATGGATGACCGTTAAAGTCTATTTTTCAT
TAATCATAATTCCAGCCTCGTTTTCGATCATACAAGGAATACTAATGATC
AAAGCACAAAATTTTGTTAATGATAATTTAATGACTTTCATGATTGTGGG
GTTTTATTGCTATCTTTTATTACTTTGCAATTCGGTGGCGAATTGTTTTT
TGTATGCAGGACGCGTCAAAGAATTCAGGAAATTCATTAAACGGTTCTGC
TGTTCTTGCACCCAACAAAAAGCTATCTATCGATTCAATAACTCACCGAA
AACTTCGACAACTACATATAGCTCAAGTCATACATCGCCGAACCGTATTC
CTTCAAACCCCGGCTTTGATCAACAACAGTAAACTCGCGCTGATTACAAA
TTCATGTTTTGAAAGTGTGCGATACATAAATTTGCTAATAACAGATTTTG
CTGGTACAACTTTTCATTCGGTGATGAATTGAAGCTGCATTTGTTTTCAC
AGTATGTAAATTAAATTACGGAAAGTGAACTGACGTTAAACTGACGGTAA
AGATGTttcatttaaaatataaatactgCATTAACACAGAAGATAAAGCA
ATTTCATCGAAATAATACTGGCTACACGAATACCGATACTGGCTACGCGA
ATACCAAACTATATTAACAAATTTAATGGTTTTCATTATGTTAAGTAGCT
GATACAACGTAAAGAAAAAAGCAATTCATAGACATTTTCATGCTTAGATG
CTCAGGTCTGAACAGGCCCCTTGCTCCTCATGACCAGGGCTTTCCAAGCA
TGGTGGTCCATGGCAACTTCTTCTAGTTGAGTCacaaattacgtcacgaa
aatcacttgcctcgtattcaaacaattaccatggtgattatgtcccttga
cacattaaatgagttttttataaatagaaagtagttttaataaaatccgc
tggaagttaatcaccatgacaatgatttcaaaacgaggcaagtgatgttc
gtgacgtaatttataaaaggtctattcaaatcatgaaaaatgatTTATGT
TACAAGGGTTgagtggtcaaaaaggtgttgcGTTTGAACATGTACTGTTT
CTTTTCTCTTGGAAACCTGATAACCACCCCTTCTGTTTAGAGACCTCGAA
TTTAGAGATCATAGAACAAtgttacttttttttaaattgtgcaAAATCTA
TTGAAATCCagtacaaaatataaaacacCTATTGTAGAAAACTGTACAAA
ATGTAGTGTATAAAAATGATGGTTATATCTAGATAATTTATGTTACAAGG
GTCTTCTAAACACAGATTTTGTGTTGAGCATGTACTGTTTCTTTTCTCTT
GGAAACCTAATAAGCACCCCTTCTGTTTAGAGACCTCGAGATCATAGAAC
AAtgttacttttttttaaattgtgcaAAATCTATTGAAATCcagtacaaa
aatataaaacaccTATTGTATAAAACTGTACAAAATTTAGGGTATATAAA
ATGATGGTTATATCTAGATAATTTATGTTACAAGGGTTGAGTGGTCAAAA
AGGTCTTCTAAACACAGATTTTGTGTTTGAGCATGTACTGTTTCCTTTCT
CTTGGAACTAATAAGCACCCCTTCTATTTGGAGACCTCGAGATCATAGAG
aacaatattaaaaaaaaaattgtgcaaaatttattgaaatccagtacaaa
aatataaaacaccTATTGTATAAAACTGCACAAAATTTAGGGTATATAAA
ATGATGGTTATATGTAGGAGCAGGGCCCACACCATGATCTGGAAAGTGAA
AGGACTAAAAATGTAGTAAACAATgaggatgagctggagtttttacaaga
tacttcactaattggtcatttaaagtgatagagatgacgcgttctttaga
aaaagtaataagattctttttttacatcttacgaccaaccaaatcaaata
agagcttgtaaaaactccagctcgtCCCAAACAAAGAGGCGCTACCATGG
TTTACATTAACGGGAAGAAAACTCAAAATCCAACAGTGccagacaatttc
aaaaagtataaaaagaagcataacccaaaaataaacatttccttagattt
ttaaataaaaaacaacaagaaaatagaATAAACTCAATTCCCCCTTTAGT
AGGGGTAAGCCCTTAGGACCTTTGATATCTTTTATTCTACGCAGCCAAAC
CTGGTCCATTTCAATCAACTATGTTCACTTAAAAGTCCTCTATAtcgttt
tttgagagctttcgattgGTGGTTTCGGTTTTTATTGACTTTCAAATTTT
AGGGGTCAAGGGGTTTTTGCctgtgacgtcagtttttgGGTCCTAAAAAG
TTTTTCTAGGCTTAAGCAAAAAGCCctttaaatacttcattctttgaaat
ggaccaggtttggttgcgtcgcataaaagaAGTCACGCGTCCTAAGGATT
TGCCCCCTACTACTTAATAGTCCTTAAAACGGCCCTTATGTGAGACTGAT
TTCGCCTAGAAATGAAGCTTGCGGGGGCGGTattttaaaaatagtttttt
tattCGGAAATAGCGTGGGCCCtgagaaaaatttatttaaaaaggaaata
taTATAAATAGCATACAAAAATCGACTAATTTTTACACCTCAATTCGATG
AGTTTAGTGATGTTACGCAATCGAGTAAAGGGAgagttttaaaagtttat
ttgtGTTGAAATGTTAAGAaatcaaacatatcaaaattttcaaaatttag
cctTCCTAGAGGTAATAATTTTCTAGCATATTAGACTGGTGACCTCGTAA
ACCTAGTAGCGATGGTCCCACACTAGGTGGGACATTTCATCCCCGAAATT
CGAgtgaaaaattgcactccaaaaccatccctgcTTTTTTAGCTTGGaag
aatagaatttctatccccttaggatttagtttttttctgctTGCTGTGGG
AAAAATCCCACCGGGGATGTAAAACAGGGCTGTAGTATTGTAAAAGTGCA
CCTGCCAGGTTGATTTGTCACATGCTTCTGCTTTGAAGAATTAGTTCGAT
TACTTTTTCTGCATcgttttttgcagttttttgtaATTAGCGATGGTGCC
TTGATGGTTCGGATTTATGGAGAGAGATATTTTATAATGTTTTTCCGCCT
CTTTGTAGTCTTTCG
Run BLAST on NCBI

transcript from alignment at sc0000763:90929..95264-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029687 ID=TCONS_00029687|Name=TCONS_00029687|organism=Clytia hemisphaerica|type=transcript|length=4336bp|location=Sequence derived from alignment at sc0000763:90929..95264- (Clytia hemisphaerica)
AATCAAGCTATGAGAAGCTTTGTGTGTGGTTGCGTCAATATGGAGTTTCA
TACTTAGACAGTTTTGGTCTAAACTTTCACAAATCAAATTCTATCAACTT
TCAACTTTTGTGCACAGTCTTTCACAGTTTCAACATACTGGCTACCTGGT
ATGTTGTTTTCTGCCTTTGCCTCTCTGTGTTTTTCTGCTCATCAGCCCAT
TTGGCTGAGGCGTCTGGTCTTAGATTAATTTTTGATAAATTTCAGTTAGA
TTTCATTTTTGCTATATTTTCATGATATTTCTTGTGCGATTTTCACGATA
CCTTTAAGGTCGTTTTTTATCGATTTTCTCAAGATTTAAGTCAATTTCTG
TTCAATTTTCTTGTATATTTTTCGTTCAATATTTCCTCACTTAGTTTTGT
CATTATTTTTAATTTTCAGTTTGAACAATCGTATTCACTTCAATCGAAGT
TCCAAACTGTGTCAGTTTATTTCCGTGCACAACAGAGATTTCGTTCCAAG
ATGGAAGTCACCAACATAACCTATCTTACTTTATATGGATTACTTTTCAT
CTTCGGTGTCACTGGAAACACACTCATTATCATATTCTTCAAATTCAAAG
ACAAAACAACAAAACCAAATTATCGAATCTTGATCATAGCATTGGCTTTC
ATAGATCTCTTATCATCCATCTATAACACCATTTTCTATCAAATACCAAT
GGAGCTACAGAAATTGATTATACCATGGTACCTAGGCCATTTCATGTGTC
ATTACTCAAGCATTATTTCCTTTTCTATGACTGTGGTTTCAAGCAATATC
CTTTGTCTTATGGTTGGTGTCAGATACCGTCAACTTGCATATCCGTTCGC
GGAAAGTTTGAAGAAACGGTATCTGTTTCTAGGTATTCTGATTGGGATAG
CAATTTCGTTCGGGACAGCATTAGCAGTACAAAAACCTATGGTTTTGACA
CATGGTTTTTGTGGTTTTGATTTTGGTGGTGATTTCTTTAATGACACTAA
AATAAGAGATCAGTTTTATCAACAAACGGCTGTTACAAGTTTTGTCACAA
TCTCAATTCAAATGTTTTTACCCTTACTTATTATCTTGTACATGACGTAT
TTAACTTCAAGATTAATTCACCATCGTAAAAAGATTCGCTTCAACAGGAA
CAAACAATTCCAATTAGCAGATAAGAAAACCGATCGTCTCATATGGATGA
CCGTTAAAGTCTATTTTTCATTAATCATAATTCCAGCCTCGTTTTCGATC
ATACAAGGAATACTAATGATCAAAGCACAAAATTTTGTTAATGATAATTT
AATGACTTTCATGATTGTGGGGTTTTATTGCTATCTTTTATTACTTTGCA
ATTCGGTGGCGAATTGTTTTTTGTATGCAGGACGCGTCAAAGAATTCAGG
AAATTCATTAAACGGTTCTGCTGTTCTTGCACCCAACAAAAAGCTATCTA
TCGATTCAATAACTCACCGAAAACTTCGACAACTACATATAGCTCAAGTC
ATACATCGCCGAACCGTATTCCTTCAAACCCCGGCTTTGATCAACAACAG
TAAACTCGCGCTGATTACAAATTCATGTTTTGAAAGTGTGCGATACATAA
ATTTGCTAATAACAGATTTTGCTGGTACAACTTTTCATTCGGTGATGAAT
TGAAGCTGCATTTGTTTTCACAGTATGTAAATTAAATTACGGAAAGTGAA
CTGACGTTAAACTGACGGTAAAGATGTTTCATTTAAAATATAAATACTGC
ATTAACACAGAAGATAAAGCAATTTCATCGAAATAATACTGGCTACACGA
ATACCGATACTGGCTACGCGAATACCAAACTATATTAACAAATTTAATGG
TTTTCATTATGTTAAGTAGCTGATACAACGTAAAGAAAAAAGCAATTCAT
AGACATTTTCATGCTTAGATGCTCAGGTCTGAACAGGCCCCTTGCTCCTC
ATGACCAGGGCTTTCCAAGCATGGTGGTCCATGGCAACTTCTTCTAGTTG
AGTCACAAATTACGTCACGAAAATCACTTGCCTCGTATTCAAACAATTAC
CATGGTGATTATGTCCCTTGACACATTAAATGAGTTTTTTATAAATAGAA
AGTAGTTTTAATAAAATCCGCTGGAAGTTAATCACCATGACAATGATTTC
AAAACGAGGCAAGTGATGTTCGTGACGTAATTTATAAAAGGTCTATTCAA
ATCATGAAAAATGATTTATGTTACAAGGGTTGAGTGGTCAAAAAGGTGTT
GCGTTTGAACATGTACTGTTTCTTTTCTCTTGGAAACCTGATAACCACCC
CTTCTGTTTAGAGACCTCGAATTTAGAGATCATAGAACAATGTTACTTTT
TTTTAAATTGTGCAAAATCTATTGAAATCCAGTACAAAATATAAAACACC
TATTGTAGAAAACTGTACAAAATGTAGTGTATAAAAATGATGGTTATATC
TAGATAATTTATGTTACAAGGGTCTTCTAAACACAGATTTTGTGTTGAGC
ATGTACTGTTTCTTTTCTCTTGGAAACCTAATAAGCACCCCTTCTGTTTA
GAGACCTCGAGATCATAGAACAATGTTACTTTTTTTTAAATTGTGCAAAA
TCTATTGAAATCCAGTACAAAAATATAAAACACCTATTGTATAAAACTGT
ACAAAATTTAGGGTATATAAAATGATGGTTATATCTAGATAATTTATGTT
ACAAGGGTTGAGTGGTCAAAAAGGTCTTCTAAACACAGATTTTGTGTTTG
AGCATGTACTGTTTCCTTTCTCTTGGAACTAATAAGCACCCCTTCTATTT
GGAGACCTCGAGATCATAGAGAACAATATTAAAAAAAAAATTGTGCAAAA
TTTATTGAAATCCAGTACAAAAATATAAAACACCTATTGTATAAAACTGC
ACAAAATTTAGGGTATATAAAATGATGGTTATATGTAGGAGCAGGGCCCA
CACCATGATCTGGAAAGTGAAAGGACTAAAAATGTAGTAAACAATGAGGA
TGAGCTGGAGTTTTTACAAGATACTTCACTAATTGGTCATTTAAAGTGAT
AGAGATGACGCGTTCTTTAGAAAAAGTAATAAGATTCTTTTTTTACATCT
TACGACCAACCAAATCAAATAAGAGCTTGTAAAAACTCCAGCTCGTCCCA
AACAAAGAGGCGCTACCATGGTTTACATTAACGGGAAGAAAACTCAAAAT
CCAACAGTGCCAGACAATTTCAAAAAGTATAAAAAGAAGCATAACCCAAA
AATAAACATTTCCTTAGATTTTTAAATAAAAAACAACAAGAAAATAGAAT
AAACTCAATTCCCCCTTTAGTAGGGGTAAGCCCTTAGGACCTTTGATATC
TTTTATTCTACGCAGCCAAACCTGGTCCATTTCAATCAACTATGTTCACT
TAAAAGTCCTCTATATCGTTTTTTGAGAGCTTTCGATTGGTGGTTTCGGT
TTTTATTGACTTTCAAATTTTAGGGGTCAAGGGGTTTTTGCCTGTGACGT
CAGTTTTTGGGTCCTAAAAAGTTTTTCTAGGCTTAAGCAAAAAGCCCTTT
AAATACTTCATTCTTTGAAATGGACCAGGTTTGGTTGCGTCGCATAAAAG
AAGTCACGCGTCCTAAGGATTTGCCCCCTACTACTTAATAGTCCTTAAAA
CGGCCCTTATGTGAGACTGATTTCGCCTAGAAATGAAGCTTGCGGGGGCG
GTATTTTAAAAATAGTTTTTTTATTCGGAAATAGCGTGGGCCCTGAGAAA
AATTTATTTAAAAAGGAAATATATATAAATAGCATACAAAAATCGACTAA
TTTTTACACCTCAATTCGATGAGTTTAGTGATGTTACGCAATCGAGTAAA
GGGAGAGTTTTAAAAGTTTATTTGTGTTGAAATGTTAAGAAATCAAACAT
ATCAAAATTTTCAAAATTTAGCCTTCCTAGAGGTAATAATTTTCTAGCAT
ATTAGACTGGTGACCTCGTAAACCTAGTAGCGATGGTCCCACACTAGGTG
GGACATTTCATCCCCGAAATTCGAGTGAAAAATTGCACTCCAAAACCATC
CCTGCTTTTTTAGCTTGGAAGAATAGAATTTCTATCCCCTTAGGATTTAG
TTTTTTTCTGCTTGCTGTGGGAAAAATCCCACCGGGGATGTAAAACAGGG
CTGTAGTATTGTAAAAGTGCACCTGCCAGGTTGATTTGTCACATGCTTCT
GCTTTGAAGAATTAGTTCGATTACTTTTTCTGCATCGTTTTTTGCAGTTT
TTTGTAATTAGCGATGGTGCCTTGATGGTTCGGATTTATGGAGAGAGATA
TTTTATAATGTTTTTCCGCCTCTTTGTAGTCTTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016963XLOC_016963Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029687-exon-sc0000763-1575043694:95117..95264TCONS_00029687-exon-sc0000763-1575043694:95117..95264Clytia hemisphaericaexon
TCONS_00029687-exon-sc0000763-1575043694:90929..94845TCONS_00029687-exon-sc0000763-1575043694:90929..94845Clytia hemisphaericaexon
TCONS_00029687-exon-sc0000763-1510915933:95117..95264TCONS_00029687-exon-sc0000763-1510915933:95117..95264Clytia hemisphaericaexon
TCONS_00029687-exon-sc0000763-1510915933:90929..94845TCONS_00029687-exon-sc0000763-1510915933:90929..94845Clytia hemisphaericaexon
TCONS_00029687-exon-sc0000763-1491911889:95117..95264TCONS_00029687-exon-sc0000763-1491911889:95117..95264Clytia hemisphaericaexon
TCONS_00029687-exon-sc0000763-1491911889:90929..94845TCONS_00029687-exon-sc0000763-1491911889:90929..94845Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:90929..95264 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.045504	0.107203	0.0203592	0	2.196	1.08133	0	0.0731869	0.0942118	0.187279	0.0180386	0	0.0122656	0.0103987	0.00696176	0	0	0	0.0198217	0	0	0	0	0	0	0	0.0253199	0	0.027052	0.0191105
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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