TCONS_00029683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029683
Unique NameTCONS_00029683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029683 ID=TCONS_00029683|Name=TCONS_00029683|organism=Clytia hemisphaerica|type=transcript|length=674bp
AGAAGAATGATGAAACCAATACCAAGGGTCATTCCTACGATCATCTTGGT
CTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGAGAAGAGGAG
AAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACTACAAAGTCT
ATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATACTACGGCAGC
AAGCCGTTCTGTAAATTatactgaaaatgaaatgacTGGCAGCTCGATGA
ATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATTAACTataCC
ACACCGATAGAAGACCAAGACTTCATTGTAAATTTAACAGACATGTCCGT
CCATGAAAACATACGAACGTCAGCTACACAACCTTTACCTCAAGTCCCTG
CAAGTGCAACAATGATTCTACCTAACGTGTACCAAAGTCTAGCTCCTTCA
AAATCACTTCACATGGCAACAGTGCCATCGTCTACGATGAATTATCTCCC
TAATGTTTTGAGTGGCAATGGTGCAGAAAATGAAGGAGATAATGAAGGTG
GTGATGATGATGACAGGAATATGCAATCTAGTGGAGATTCTGAAAGTAGT
GGAGAAACATCAGGGAGTGGAGAAGACGGAGAAGGGAGTGGCAAAGAAAA
CGAAGAAGTCACTGGCAGTGGTGA
Run BLAST on NCBI

transcript from alignment at sc0000763:21602..23454-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029683 ID=TCONS_00029683|Name=TCONS_00029683|organism=Clytia hemisphaerica|type=transcript|length=1853bp|location=Sequence derived from alignment at sc0000763:21602..23454- (Clytia hemisphaerica)
AGAAGAATGATGAAACCAATACCAAGGGTCATTCCTACGATCATCTTGGT
CTGTTGTTTCTTGTTGATAACAAATGATGCCAAAGATTTGAGAAGAGGAG
AAACACAGCCGTTGAATCATACCGGAGATGCAAGGACCACTACAAAGTCT
ATGAACTTCACTAACAATGTTGAGAATGTGATCGAAAATACTACGGCAGC
AAGCCGTTCTGTAAATTATACTGAAAATGAAATGACTGGCAGCTCGATGA
ATTTCACTGAAAATATCATGATCGATAGCTCTTCAAAAATTAACTGTAAG
AATTGTTAAGTTGTTTTGAAAGTAAGATTTTTGAAAATACACGTTTAATG
CAAGGAAAAGTATTTACCGCATTAGATTCTTAAAGGTGTTGGAGATATTT
TAAAAACCTGGTGGTGAATTGAGGAGGTAATTTAACAGCTTGGTAGTAAA
TCTTTCAGAATTTTAAAAAGTCAAAGGGTGGGTAGGAATAAAATTTTAAA
AGAATTCGAAGACTTACTATGGATAACCTTGGAAGCGTCCCCAAGACTTT
CCAGCGAAATTCGTATGCTGACAACTACAGGGGATTAAGGCATCTTTAGA
AAAAATTTCAATTAATTTCGATACTTAAACATTAAAATAGCAAAAATCTA
CGCAAAATCCGAGTTTTTTTTTGCAAATTTCTTAATATGAAAACATCTTA
TTCTTCTTCCTGATACCCTTTATTTGAACCCAAAATGAGCTTCTAGAAAT
GATTTGTAACGTTGCAAGAATTTTGACCTCCACGAACCCGCCTTATTCAC
CTGGAGAACCCCCTGTCTTTTTAGAAATGATATTTCTTTTGCCTACATCT
GTCTGTATTAGTCTCCTTTTCAAATATTTTCTAGCCTGAATATTTTTTTA
AATTTCAACCATAGCGACCAGCGTGGTCGGCTTTTGAGGGGCCTGGTATT
ACATCGCTGCTAAGGGTTGGTAGCTGTATTAGGTACCCTTGTGCGTGTGT
GTTACATGTCATTTGGATACAATCCTAGATTTAAATGGTGAGACAAGAGT
AAAATTTGAACTTCACCCCCTTCCCCCAGTAGAAAGTCGTCCGATATTAG
CATTGGAACTGGAAGGAGAGGGGGACCTTTTCACTGGCATTAATTTCCAG
TGATTCCATCTAGGATTGTAGCTGAAAAAGGAGATGATCTAATGGAAGCA
GCACTTTGTCATTGAACGTCTTTCTTTTTAAGATACCACACCGATAGAAG
ACCAAGACTTCATTGTAAATTTAACAGACATGTCCGTCCATGAAAACATA
CGAACGTCAGCTACACAACCTTTACCTCAAGTCCCTGCAAGTGCAACAAT
GATTCTACCTAACGTGTACCAAAGTCTAGCTCCTTCAAAATCACTTCACA
TGGCAACAGTGCCATCGTCTACGATGAATTATCTCCCTAATGTTTTGAGT
GGCAATGGTGCAGAAAATGAAGGAGATAATGAAGGTGGTGATGATGATGA
CAGGAATATGCAATCTAGTGGAGATTCTGAAAGTAGTGGAGGTAATACTT
TAAGAAGTTGAAGAATTTACCTTAAAACTAAAATTTGATTAAGTCCCCCT
TCGATGATGTAGTATATGCAAACGAAACCTCATCTCTGTTGTATAAAGAT
TTTAAGAAGATCAAAGGATGAGAACCTTGACTATTCCAACTATTCGAATT
CATCGGATTCGAAAAAGAGAGTTGATTTACAATTTTAAAATTGTTAAAAC
AACACGTGTATCTTTTCTAAATTCTTTCTAAAGAAACATCAGGGAGTGGA
GAAGACGGAGAAGGGAGTGGCAAAGAAAACGAAGAAGTCACTGGCAGTGG
TGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016961XLOC_016961Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029683-exon-sc0000763-1575043694:23160..23454TCONS_00029683-exon-sc0000763-1575043694:23160..23454Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1575043694:21914..22222TCONS_00029683-exon-sc0000763-1575043694:21914..22222Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1575043694:21602..21671TCONS_00029683-exon-sc0000763-1575043694:21602..21671Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1510915933:23160..23454TCONS_00029683-exon-sc0000763-1510915933:23160..23454Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1510915933:21914..22222TCONS_00029683-exon-sc0000763-1510915933:21914..22222Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1510915933:21602..21671TCONS_00029683-exon-sc0000763-1510915933:21602..21671Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1491911889:23160..23454TCONS_00029683-exon-sc0000763-1491911889:23160..23454Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1491911889:21914..22222TCONS_00029683-exon-sc0000763-1491911889:21914..22222Clytia hemisphaericaexon
TCONS_00029683-exon-sc0000763-1491911889:21602..21671TCONS_00029683-exon-sc0000763-1491911889:21602..21671Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:21602..23454 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60222	1.17867	0.863865	0.59161	0	0.894353	1.1616	0.797484	4.58425e-08	0.666085	0.850281	0.914631	2.44998	4.4744	0.190156	0.699754	41.7738	2.795	0.803664	10.8557	21.0694	14.8578	8.54647	5.16802	17.0989	0.791662	113.261	91.1439	7.39017	1.664
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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