TCONS_00029682 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029682
Unique NameTCONS_00029682
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length822

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029682 ID=TCONS_00029682|Name=TCONS_00029682|organism=Clytia hemisphaerica|type=transcript|length=822bp
ACAAAACCGACAAATCCGACACCGACAGTCGATAAATACGGCGGTTACGA
AAACCAAGAACAATATTACGCGTCTATTGCGTTGAGTGGAGCTGTTGACA
AATTCCTCGTAACATTTCCAAAGACTTCACCGTGTGATGTTGGAAGATTT
GATCAGGAACTTCAAGACAAACTAATGAATCGTATTGAAGATACTGTTTT
CAATAGTTGGAAGGATTTGAAATCCCATTTGGTTGATCATAGAGAATTAC
CACGGCAACGTAACCAATACTTCTTCATATTCATGGGATTAAAATTGCTC
AAACTATCAGCTTTGAAGTCACAACAAGAAAACGAAATCACGAGGCGAGC
AATCGCCCGTCAACATTGTATACTACAAAACGAACGTTTCAATCTACGAG
AATGGATGGTcgaatttacagaccagattcaACGTCACCGAATTAACGCT
ACGGAAGCGTTCGCTCCGCTggaaaaatacatcaaatttcTACACCAAAA
ACGTAGCAAGGATCCAACTAAAAGGACTGAAGAATCAAGTAACACAGACA
TAATGAGATTGTTGAATAACGGGTTTAGTATGATTCATATTGATCAACTC
GATTCGATCATTCGACCACCAAGAAACGATGACCTCACATTCactaaaat
tcatcaaattttgcAACTCTTACATCATGTACCAAAAAGCAATTATAATG
TACACGCCAGAGAGACTATCTTGCacaaagcattttctttgaaaatcttt
ttggaaTTCTTAACACTTGATTCGAGCTATATGATGAACTAGATTTCATC
TGAATTCATTTGCAAATTTGTG
Run BLAST on NCBI

transcript from alignment at sc0000763:17563..21172-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029682 ID=TCONS_00029682|Name=TCONS_00029682|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at sc0000763:17563..21172- (Clytia hemisphaerica)
ACAAAACCGACAAATCCGACACCGACAGTCGATAAATACGGCGGTTACGA
AAACCAAGAACAATATTACGCGTCTATTGCGTTGAGTGGAGCTGTTGACA
AATTCCTCGTAACATTTCCAAAGACTTCACCGTGTGATGTTGGAAGATTT
GATCAGGAACTTCAAGACAAACTAATGAATCGTATTGAAGATACTGTTTT
CAATAGTTGGAAGGATTTGAAATCCCATTTGGTTGATCATAGAGAATTAC
CACGGCAACGTAACCAATACTTCTTCAGTAAGTTTCAATCATTTATCACA
CTCCTGTCTTGTCTGTACACTACGGCTAATTTCAAAATTCATTGCCGTAG
GAGGGTCTATTGTCATTGTTTTTTCTCATTTGAGATTTTTCAATCCGATC
ACAGCAATGGAATGTGGGTGAGAGAGGGGAGACGACGAGAGAAGTGTTGC
TATTCATAAATCATACTTCATCGCAGAGGTCTCCGTACAGGAATTTTATT
ATGAAACAGACAATGCGCACAGAGTGTACTACGAAGCGATAAACGTGAGA
TACACTCTGGTACAGAAGAACCCTTATCTCGTTTAGTTGCTTCTTTTTGT
CTTTAGCATACTATGAAATATGAGTCATTATACAGGTCACCAAAACCGAT
TGTTTTAAACAGAAATCAAAACCATTTGTCGTCGTAAAAGTCAGCATAAA
TCGTGAGGATTTTTGGTGTCACAAACTTTTTTTCAGGACACCCTATGCTT
AGTCTACATTAAAAACAGCTTCAGACTTTACTCTGGAAGAGAAGGGGGGC
TTCACGTNATCTTCCAGACTTCTAACGAAACTTGCCAATGAAGATCCTGG
CATTCTCTTGGTAAAACGATCCCAGAAAAAATAACAATCTTCGTAGAATA
AAGTGTGGTTGCTCCCATGTGATGCAGGCCAAAAATGGTTTCTAATTAGA
TTATGAAGCGTGAAAGGTGTTGTAAATGCGCCACATTTACAACACCCCGA
TTGGAATTTGTTGAAATCATAACGTCCTGAATAGAAAAAAGGATGTGTAG
GAATGTTATAAGTCCTTTAAAATAAAATCTAAAGTGCAGTATTAGAATAA
ACCAACAAGTACATTATATATATCATTTGAAATATAACTCAACTGAAAAA
ATATTAATGATTGCTCGAAGAATTAAAAAGCTCATTACCTTTTGGTGTAA
TCACTGTGATTGAATCTGTAGATATTTTGGTAAGACAGCTCTCGCATTTA
TGATTACATTCTTGACAAACTGAAGGCAGTGGGAGATACTTCTCTATAAT
CATAAATTGAAAAATAGTAAAAGCAAGACTAATAAGTTGAATTTCCTCCT
TGGATTTAGGACAGTGCTACAAGGTTGTGAATCTGTTAGAATAGATATCA
AAAACGTTCTTGAAACAGTATAAATTGTATTATATTACTGACACTCTACT
ACTCACCAATATCAACAAGTTCGCCCTCATCAATAGCTTCTGTTGGAAAT
TTTTGATGGATGTCTCTGTCACATACTTCACACAAATCTTTTCTCCAAAA
ACAAGAAAAGCACCTAATGCAGGCTGTTTGTTGGTTACATGTCATGCAAA
GTGAAGGACTTGATTCCCTTTGAAGAACAAGTTCCAACAATTCACCCCTT
GCTTGCCCCCATTGTGTCATCCCAACTTCCATCCTTTTTGCCCATGATCG
TTTTTTAGATGAATCAGGAACGATATTTTCGAGTTCGTCTATAGTTTTGA
GTAAGAAGTCATCATAATGAATAGCTGGAATTAAATTTAAATTAGCACAA
TTAGATATAATATATTCCTTCCTCCTTTTAGGTTTATTGCTCAACGTTTA
TAATGTTGTGGCTCTTCTTGCTTTTGTTTTTCTCTTGCTTTTCTTGTCAT
TTATCACTTCCTTTTCGAATTCCTCAAAGTCTTTTGCTTTCTTTTTAACT
TCTATTTCTCTCTCTAATATGGGGGGGGGTTTCATGGTTGGCGGAGGAGC
GGAATCGGCCCTTTTTTCGGACGGAGTGGCGGAATTTGTGGCGAAAATTT
AGACGGAATTACGGAAATTGGGTTCTCTGACGGAGACGGAAAATTTGACA
AATTTAGTGCGGAAAAACAGAATTTAGCAAAAAAATTTGCGGAATTTCGG
AATTGGTAAAAGATATTCAAAATTTGCGGAATTTTCGGTGACGGAATTTT
TGTTCAATTTAAGACGGTTTGATGGAAATCGGAGAAAAAATTGGGGGAAT
TGCGGAATCGGGTCCCCCCCCCCCCGAGAAGAAGTTTTACGCTCGAAACA
AAGGAAGAAATGACGTGGCTTACCTGTGCTACACTGTGTATTTCGATACT
ATGGTCTCCGAGTCTTTCTGTTCAAATCTGAATAATCTTTGCGCTGAATG
AAATTCTTTAATCAGCCTTCTAGGATTTTTAGGGAAGTCTTTTTATAGTC
GGAAATAGAGCTGAATGCTGAAGATGAAGTGAGTTTTAAGATAGAGGTGT
ATGCAATTAGCTAATCATATGTAAAGTAACCAGAAAATTTGACTGCCTAA
AGTCAATGCGTTGTTTCTTTCGACGATACGCAACGACTTTGTTTTTTTCT
TTAAGCTAAGTTTCAGCTGCAAGAAGATTTCCCATCTAAACTAGAAATTA
CTACTCTTTTTCATCAGCCTTATCTCTGGAATTAAGCAATTCTGTAAAGA
ACTAAAGTTTAACGATCAATGAGTTTAAAAATAATTCAAACGTCGACTCA
TTCTACCTTCACTCTCTCTCAATCCGGCTGATAATCGAAGTATCGATCGA
CGTCAAATGAGCTTAGTAAAGCTCAGATTGCAGATGTAAAACGATAAATA
TATACATGGTATACATTTACTCACCATCTGGATAACGCTATCACTCTATC
TCACTAACATTCTGCCGATTGTTAGTGTGAAGGTTTCGATCACAGACTTG
CACCGCAATGGATTGTGCTCGAATTCCAAGCTCTTCCAGGCAGGGTGTTA
AGGATATGCGATGATAGACTAGCTCTACTTTCACTCATACATGTCGACTC
TTTCCTTTGTTTCAGTATTCATGGGATTAAAATTGCTCAAACTATCAGCT
TTGAAGTCACAACAAGAAAACGAAATCACGAGGCGAGCAATCGCCCGTCA
ACATTGTATACTACAAAACGAACGTTTCAATCTACGAGAATGGATGGTCG
AATTTACAGACCAGATTCAACGTCACCGAATTAACGCTACGGAAGCGTTC
GCTCCGCTGGAAAAATACATCAAATTTCTACACCAAAAACGTAGCAAGGA
TCCAACTAAAAGGACTGAAGAATCAAGTAACACAGACATAATGAGATTGT
TGAATAACGGGTTTAGTATGATTCATATTGATCAACTCGATTCGATCATT
CGACCACCAAGAAACGATGACCTCACATTCACTAAAATTCATCAAATTTT
GCAACTCTTACATCATGTACCAAAAAGCAATTATAATGTACACGCCAGAG
AGACTATCTTGCACAAAGCATTTTCTTTGAAAATCTTTTTGGAATTCTTA
ACACTTGATTCGAGCTATATGATGAACTAGATTTCATCTGAATTCATTTG
CAAATTTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016960XLOC_016960Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029682-exon-sc0000763-1575043694:20896..21172TCONS_00029682-exon-sc0000763-1575043694:20896..21172Clytia hemisphaericaexon
TCONS_00029682-exon-sc0000763-1575043694:17563..18107TCONS_00029682-exon-sc0000763-1575043694:17563..18107Clytia hemisphaericaexon
TCONS_00029682-exon-sc0000763-1510915933:20896..21172TCONS_00029682-exon-sc0000763-1510915933:20896..21172Clytia hemisphaericaexon
TCONS_00029682-exon-sc0000763-1510915933:17563..18107TCONS_00029682-exon-sc0000763-1510915933:17563..18107Clytia hemisphaericaexon
TCONS_00029682-exon-sc0000763-1491911889:20896..21172TCONS_00029682-exon-sc0000763-1491911889:20896..21172Clytia hemisphaericaexon
TCONS_00029682-exon-sc0000763-1491911889:17563..18107TCONS_00029682-exon-sc0000763-1491911889:17563..18107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:17563..21172 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.45827	1.48084	0.898195	0.506469	1.4935	0.986799	2.00902	2.59868	1.85328	1.27416	1.17271	1.28963	5.72364	4.32066	0.974736	1.62232	59.6813	6.43807	3.4216	14.1649	38.2511	37.5234	17.4092	18.9569	49.0913	18.9997	444.989	338.569	46.5403	39.3272
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029682 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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