TCONS_00029673 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029673
Unique NameTCONS_00029673
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029673 ID=TCONS_00029673|Name=TCONS_00029673|organism=Clytia hemisphaerica|type=transcript|length=1399bp
GCCTAACCACGCACCTTTGAACTTTGAACGATTTTGGAGGCTTTGGTTGA
CCGGCACGCGTCAGAAATAACAAAAATGAGGATTTTGTAGGAGGTTCTTG
GTTTGGATTCAAGTTCATCAGTGTCTTTACTCTTTTCACCATTAACATTG
TCATGGCAGGATCAAATGACTCTGTTGCTATCAAGCTCTTCACATTATCG
TGTAGCGTCGTTGGATGGTTCTGGAATACCGTTACTTTTATACCCTGGTA
TGTTTTGagtggaaatttcaaaagacCAAAATATGGACACATCCAAGGAA
AGTCAATCACTGGACGTCCAGAGGGTCCTTATGCTGATATTAACCACCTT
TCTGGATCCAAAGATGGGTTTGATGGGATCACTACCTTGGATCAGTTGTT
TAAAAAATCTGTTGAAAAACATGGAGACAGAGGGTGCATGGGAACACGAG
AGCTTTTGGCCGAAGATGATGAAGTCCAACCCAATGGAcgtattttcaaa
aagatgatCCTTGGTGACTACAAGTGGATGAGTTACAATGAAGCATATAC
AGAAGTTCAACGGGTCAGTGCTGGTCTTAAAGCTATTGGTGTACAAACGA
AAGAATATGTTATCATCTTTGCCGAAACTAAAGCTGAATGGATGTTGAGT
GCTCAAGCATGTTTTATGAGAAATTTCCCAGTTGTCACAATTTATGCCAC
TCTTGGCGACGATGCTTTGGTCTACGGATTCAACGAAGCAGAAGCCAAGT
ATGTCATGGTGGATGCAGCCCTTCTACccaaactgaaaaatttaatttcc
caACTAACACACGTTGAACAAATTGTCTATTTTGGAAATGCCAAGAAAGC
GCTTGTACAAGAATTCCCTGAAAACATCAAAGTCTATTCTTATCAACAAA
TCAAAGATATCGGATCCAAACTAAAGAATTTTGATTCACCGGTAGAATCA
CCGGATCAAGATGACGTAGCTGTGGTGATGTACACATCAGGATCCACTGG
TGTTCCCAAAGGTGTCATCATTTCTCATTTGAATGTCACATCTTGTTTAC
ATGCACTCGTTTCCAGTGTCCCAAACATGGGACCAAACGATCGTTATATC
GGTTACCTTCCACTGGCACATATCATGGAGTTAGCTTGTGAATGTGGATG
TCTAGCACTGGCTACACCGATTGGATATTCAAGTGCACTGACCCTATCTG
ATCAATCTTCCAAGATCAAGAAAGGAACCAAAGGAGATGCGAGTGTTCTT
AGACCAACTTTGATGGCCGCTGTTCCGATGATCATGGATCGTATGAGAAA
AGCTGTTCTAGATAAAGTGGCCGGTGGCTCACCTTTCGCACAAGCGCTCT
TCAATTTCGCTTTCAACTATAAATTAAGGCTCATCAGAAAAGGCTACGA
Run BLAST on NCBI

transcript from alignment at sc0000763:123053..134475+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029673 ID=TCONS_00029673|Name=TCONS_00029673|organism=Clytia hemisphaerica|type=transcript|length=11423bp|location=Sequence derived from alignment at sc0000763:123053..134475+ (Clytia hemisphaerica)
GCCTAACCACGCACCTTTGAACTTTGAACGATTTTGGAGGCTTTGGTTGA
CCGGCACGCGTCAGAAATAACAAAAATGAGGATTTTGTAGGAGGTTCTTG
GTTTGGATTCAAGTTCATCAGTGTCTTTACTCTTTTCACCATTAACATTG
TCATGGCAGGATCAAATGACTCTGTTGCTATCAAGCTCTTCACATTATCG
TGTAGCGTCGTTGGATGGTTCTGGAATACCGTTACTTTTATACCCTGGTA
TGTTTTGagtggaaatttcaaaagacCAAAATATGGACACATCCAAGGAA
AGTCAATCACTGGACGTCCAGAGGGTCCTTATGCTGATATTAACCACCTT
TCTGGATCCAAAGATGGGTTTGATGGGATCACTACCTTGGATCAGTTGTT
TAAGTAAGCTTGTGGAtttatttgcattttttttaattgtgttctttatt
tttggaaattccAGAAAAGATGTCATGTTGGGATATTATCTATATTCACT
TATTCAGAGCTTATGTTGTAACTATCTTTTATTATCGTTTCATATCGGAC
CAGTTatatatttgtttttgtttgtttttgtgacCTCGCTTAGTCTTGCT
TTTACAGATCTGCCAACCTCtaagaggaccctgccgacgcaccggactta
acgaacaccggacacgcgaaagtccggtgtaaaatgagaattttttttac
caccggacaatctctacacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcgaacttgattcaggtaactctcatccttgtt
gtgcaaatacatcctgtagatgactgatgttgttttttctgaaagctaga
tttcctagtgtgactaactgtttggtcagtattttcacttactgtaaaat
cgaaagaaaaaTCGTGTAATTTCAGGTAATTTTTAATACACCTTTCGTTA
ACTCAAATCAactgactttggaggttcggtgaaatggtggcagaATTAca
ttcccatgttttgtcagatagtcccaagttagagcagttgacggtatgca
aaacatttgcaaaaagaaagtattaacataaaacttacatgcataaggCG
AGGGGAATTAATGAACGGGTTTACCGTCGcgttggaaaaaatatttgatg
cggcaaaagttcattattcattatttttcaatacaCATCGACCCGAACAT
TCAGTGTAAAGAACGTTGCCTTTTTGCCACTTTTTcccattgaaaacaaa
aaaccttTGGATATTTAGACTCCCAGAACATTGTAGAATCTTTTGATTAT
CAAActaagagaaaaataaagagTTTTAACCGTTAAATCTAATCATATTC
CCTTCGTGTTTAAACTTTCACAAAGTCATGTTCCCTCATgcgccgccatc
ttgaatttagaATTAGAAGCATGTCGGAAACTAGAACCAAGTTTATCTCA
CCCAATGCAGATACTGGAACTGgaaatatttctgaaaaaaaaaaaaagaa
cttttattaaaataatgaacttttttgagcggcAGCCCGCGGGCATGCGG
GCAGTCGACGGTAAACCCGTTCATTGATTCCCCTCGcctaattggcatta
tattaaagtgtaatcttgtacaCACATCAAAAatctttaccccctggata
tccgcccctggatatccgatatccgatatcctcaataTCGTGTCAGCACC
TTAGACACAgattatttctggaaaagcccattgaattaaaaaaggcaaaa
aagaaagGAATTTCCTAAGCATTTTAcgaaagtacatggattttcatcag
aatttccagggttggtctaaaaagcagggtagccaatggggtagccaatt
gggctaggttatggggtacctctttttgcctaaacttttgaaatctgaaa
cctgttttcatgtggaaataactatacaacatcttgttaatgattccatg
taataaaatttaagattcctttcgccacaatagccttttttccaaaggta
ctaaactttgttacttctcaagagacctggcgccattttgtcttccttca
tggcttcgtttgaaaatttacagacccgaataaaaaatatatacaaaaca
gtttttaatattttagatttagattttatttatgtttttaattgttattt
ccgtgaagctgtaattcgatgataatagctttgaaatcgcctttgggcca
tatgatctctaatcttgtcatatcttaacaatcctttgttatcgaatcta
ttgtttaatttatatcatgtttagatgtttcaaacaattaattcctttca
aaattttttaatatggcagcttatgatagatacaaaaagtcttttgaaat
agctctattataatgaagctctatttcttactcctcgtgcattaacacgt
ggtaatttatatctttgtttatcTTTGTAATCATACATaatcaatctaag
tatcaatcagattcgtgctccctggtcagtaaaatgtggttctatgcatt
cattttcggtatttctattctggtctgtaaaatatttaggtaccccacaa
cctagcccaattggctaccccaattggctaccctgctttttagaccaacc
cgaatttccaaaaaattcaaaaaattatttccccGGCTCGAAAAAATTTC
TGGAATGGTCCATTGTTTGATTGGATCGATAAAATCGATATTATATGGGA
TCAATATAATTCTACGATCAATAATTTGATTGGATCAATGTAAGATTGAT
CAGTAAGCGATAAATGATCCTGACCGAAAAAATCTTAAGTATTGATCCCC
CTTCGATCTTTTATCGGAATAGATGAGTAATTTATCAATCTTTTATCGAT
TCTTCATCGATCTGTTCCAATTATCGACCCTATTGAGCCTgagccccgtc
agcaccttggactgactaccaaTTCTCCTCAAATAgcatgggttgaccca
ggcaaaggttcattcacttgccaataACTGCTGCAAGTGGGAATCAAACC
TCAGTTGTCTGTGCAACAAgaaaggtcaatgaccactaatACCACAGCGT
Acaagtgttttttatttttttctatttctatttggttgagttgcaggagg
ctttgaggcctatttttgcAACTATAGACGTTTTTAATGAGCGCCCTGTC
AGCACCTtagactgactacccaattcccctcgcATGGCATAGGTTGGCTC
GGGCGAATGTTCGtttacttgccaagtgaaccgctgcgagtgggaatcaa
acctcagtcgcctgtgcagcaacctagctcaatgaccactataccaccaA
CGTTTACAGGGATCGCACCACacagatttttaaaagaaatacgcaGATGG
GTTCCTGTCTACTCTGGGGCTAAATAACActtcttaaatatttttcttta
ctgttggtttttaatttctctaaacctttatgtttctgtatgttttcatg
caaagtgtgatctgatccttaggcgaaccctaaaaatatttttgtttccg
gtccaccgggtgacgaaaaatacactcacccggccggccgcaaaaaattt
ttttttgctaaatttcgatcccaaaactcgattttttaaagcactcgtaG
AAGTTAAAATGATGGTCTTCTTTACCTTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCGtgcga
ttattcaaatacttaattttcatcgtttatattttcaactgtgttacaat
atctctaagaactggacactctctttcattttgaatatttatcgtcaatt
gctaaaggctccaaactgtgattacgaagtgaacttttttgagaaaaaag
tagagtgagagaaacatttccccaattttttaaatcctcactttatgaat
gtttctttttattttactcacaagtcagcatgattccttttataaaaaca
aagctgtttacttactgaaaagtccccactttgtaaatgtttctatttat
tttactcacaaatcagcatgattcttttataaaaaccaagttgtataaaa
aaaaaaaacattcttaaaggttgagttgcaagcaagaattaacaaaaaca
atgcagggtttatttgagatgaataaaatttcatttctataacaatgatc
ggcgtgcattttacagtagaatataaaatatcacgtgcgataaatcacac
gcctcaaaaactgatttacgaaagttttccaaacaaacaaactaacccta
accctaacgatgatgtacgaaaaaaaaatgcggccgggtgacgacgaaat
aaattttcacccggccggtggaccggaaacaaaagattttttcgggttcg
ccttaaaatgcaaaaatgaagacattctattgcgttctctaaaagtgcac
acacatgtaaatagagctttgtgaatgccataaaatttttcccctatact
gggacctaaaatttcaTCAGActggggggaccttgttctcaggggggacc
taaatttggcaggagggacctagaaccccagtcggagccatggTTTACCT
TGTTAAATTTGTTAAATTCAATGAAAGCTCTTAGTACCTGTCAAGCATGA
GTTACATTGAATAAGTCAGCTTGATAAAAACTATTTGTTGTGTTTGcact
tcaaaaaatattcttgaaTCATTGAATATGCGAGCAGTCAGAAAGCAAGC
AAAAGAAAGCAAAAGATTTTAAGTAAAAAGAAGACTTTGTTGGATTGGAG
AACAGAAACTAATAAATAGAAACTAGCCCCTGTATAAGgtaaattgttta
ttttgttcaatttgccaaatttttctcAATCAATCACCACCAtatccatt
gttttattttgtcccatcaaaaaagtgtgatggatttgttaaaaaaaata
atatccaATCAAATGAGAGTTAAGtgctttcatccaatcagattgataag
taatcgataaatGAATGTTTGACCAGATATGACTTTTTTCGGTCgccatt
ttttattgtttagttTTGACTTGATCATTCACAACCAtgtccccgtgtat
tccagcctttatttacgttacttatggacgccagagaatatacCCTgatg
ttggctgatgcgaggcaaaaaaaatcattttatattattttgtatGTACT
ACTTCATGATTTAGTATGAATTAGGTTCCTAACccaagaatgctgtaaga
atattttcccaaaaaagttaagattgCAGATGGCTTGTTTTTGGGGAAAT
TCAGgtttcaaaaaaagaataagTCATTAGTCATAATACCCTACAAGATG
TGTTTGTAATAAAAATGAGAGTTTTACACTTTTGCTTTATATTCTTAGTT
AGTAATGAAAGCAATGCAATATATATTCACAGTAAGGAGAATAAACTCGT
GCCAAAAGCAAAACTTTTCtaatattaaaacaaaaaattgaatctGGGAC
TTGAAATGAATCAGAATCCCCTCCCTATAAATTGAGGATACTTCAAGATT
TGGAAATCttctaatttaaattttttgattacCTTGCTGATGAAAAGACC
TTTCTTTGAACTTAGCCTTGGATTTGGCCTGTTATTTGGAAATGTTTAtt
gatttgatctttgaaattttgattagtCAACATGAcattagcaaaaggtc
tattgtacATTGACCTCTTCTTAAAAACCTTACTGATTACTGTAGCAAAA
AGGCTAAATAAAATCTTATAAGTGAATTATTATTTGTTCTTATCTGTTCA
TGTTTGATTATACTTTTCATTTTAACACAGTGATATATGATAAATAAAGA
TTAACAAAGTATATTTTGAGGGTGCATTTACAGggaattttgtatttttg
tagaatGCAATCAACAGAAACCCAAACAACATAGAATTTATAGATAATAT
AATATTTGAAGATATCAAACCAACGATCCTTTATCAATCCTCTAGAAACT
TGTTTCAAAATTCACAGGTTGGGTTTTGCCAATCCTTAAGGGAGTGTTTA
TTGAAAGGGTTGTTTTTAACGTTCAAAAGGTAATTCATTAAATGATCACC
TTTTATTAAGTAGAGATTATCAAAGGGGGAGGCATCTAATTGAATTATTA
CTACTATATTTAGTCAAAGTAGgcaacacccctccaaccccaCCTAAAAA
AAGTGAGGATGGGTGTAGGTGGGGGTGCTACATAggtttacccccccccc
ccccccNGTATCCATTTGAAGTATTACTACTATATATAGTCATAGTAGgc
aacacccctccaaccccgGCTAAAAAAGTGAGGATGGGTGTAGGTGGGGG
TGCTACATAGGTTTACCCCCCCCCTGAAATTTCTCAtcaacccaaccccc
acctttttttttaaatccaaaaATCCTCAACGGGTTATAACGGAATTATT
TTATTTCTACTTTAGAAAATCTGTTGAAAAACATGGAGACAGAGGGTGCA
TGGGAACACGAGAGCTTTTGGCCGAAGATGATGAAGTCCAACCCAATGGA
cgtattttcaaaaagatgatCCTTGGTGACTACAAGTGGATGAGTTACAA
TGAAGCATATACAGAAGTTCAACGGGTCAGTGCTGGTCTTAAAGCTATTG
GTGTACAAACGAAAGAATATGTTATCATCTTTGCCGAAACTAAAGCTGAA
TGGATGTTGAGTGCTCAAGCATGTTTTATGAGAAATTTCCCAGGTATTTT
GGATAAGTTATTGCTTTAGTTTACCCAAAGTTATACTCTTAAAGTGTATA
GGGACAAGAACAACCGCTGTGAgtgtttctcaaaaaaaaagtctCATATA
GCCACTGTTCATGTAGAATAAAAGTGGGAAAGATTGCATCCAAAAGACTG
TTAACATCGATTTTTTATAAATCATTACCGTATACACAACTGCTATTTAC
GTAACTTTGCAGATTATTGTGTCAGTCATTAAATTTTTGTCCTCTTGAGT
TTAAGTAAAAGATTATGAGCAGCATTTGCCAATTCTCATCAAAATCAAAG
TAGATTGATTTGGAAAAAAGCTTTTCTGTGATTGTGTAGCAACCATAGCG
TTATGATGAAACTTTGTACAATCAAATGTTGCTTTACCTTCTTCTCTAGT
TGTCACAATTTATGCCACTCTTGGCGACGATGCTTTGGTCTACGGATTCA
ACGAAGCAGAAGCCAAGTATGTCATGGTGGATGCAGCCCTTCTACccaaa
ctgaaaaatttaatttcccaACTAACACACGTTGAACAAATTGTCTATTT
TGGAAATGCCAAGAAAGCGCTTGTACAAGAATTCCCTGAAAACATCAAAG
TCTATTCTTATCAACAAATCAAAGATATCGGATCCAAACTAAAGAATTGT
AAGTGTTTTCTTCGCTATCATTATTCAGAACTAGTCACATTCTCTAACCC
aaagatttgtttttcaaagtcggaaagatttcattaaaattttttaaaag
aacaagttgtaacaaatggATCATTTCTTTTGGAACACAAAATCTCTGAA
ATGTTAGCAAATCCATATATATAACGTTGNTTGGTGTACAAACCAAAGAA
TATGTTATCATCTTTGCCGAAACTAAAGCTGAATGGATGTTGAGTGCTCA
AGCATGTTTCATGAGAAATTTCCCAGGTATTTTGGATAAGTTATTGCTTT
AGTTTACCCAAAGTTATACTCTTAAAGTGTATAGGGACAAGAACAGCCGC
TGTGAgtgtttctcaaaaaaaaagtctCATATAGCCACTGTTCATGTAGA
ATAAAAGTGGGAAAGATTGCATCCAAAAGACTGTTAACATCGATTTTTTA
TAAATCATTACCGTATACACAACTGCTATTTACGTAACTTTGCAGATTAT
TGTGTCAGTCATTAAATTTTTGTCCTCTTGAGTTTAAGTAAAAGATTATG
AGCAGCATTTGCCAATTCTCATCAAAATCAAAGTAGATTGATTTGGAAAA
AAGCTTTTCTGTGATTGTGTAGCAACCATAGCGTTATGATGAAACTTTGT
ACAATCAAATGTTGCTTTACCTTCTTCTCTAGTTGTCACAATTTATGCCA
CTCTTGGCGACGATGCTTTGGTCTACGGATTCAACGAAGCAGAAGCCAAG
TATGTCATGGTGGATGCAGCCCTTCTACccaaactgaaaaatttaatttc
ccaACTAACACACGTTGAACAAATTGTCTATTTTGGAAATGCCAAGAAAG
CGCTTGTACAAGAATTCCCTGAAAACATCAAAGTCTATTCTTATCAACAA
ATCAAAGATATCGGATCCAAACTAAAGAATTGTAAGTGTTTTCTTCGCTA
TCATTATTCAGAACTAGTCACATTCTCTAACCCaaagatttgtttttcaa
agtcggaaagatttcattaaaattttttaaaagaacaagttgtaacaaat
ggATCATTTCTTTTGGAACACAAAATCTCTGAAATGTTAGCAAATCCATA
TATATAACGTTGTAAGGAAGCTATTACGGAGTGAGTTTAAGTCTGGCCAT
GTCTAATTGAAAAGTGAGGTCTAGAACACTGGCATCACTCGATAAAGTTC
TTTCCAAGAACAAAAGCAAGCCCCCTTTTAGTTTCATTAACAAATAACAA
CATCGTCATATCTCTCTTTTGAGATGATTCTctaaacttttatttatttt
ttgaatatagTTGATTCACCGGTAGAATCACCGGATCAAGATGACGTAGC
TGTGGTGATGTACACATCAGGATCCACTGGTGTTCCCAAAGGTACcatat
attttcttttcttgtgtTGTGTGTAATGCTCACGTTTGGTTTTAACTGTG
GATGGActtactttttttaggtttttattttctgactttaATTTGAACTC
TGAATTTATTGCAGCTTTTTAGGtgatatttttacaattttgaagtaaaa
aattccAATACCTTTTTTAGGTGTCATCATTTCTCATTTGAATGTCACAT
CTTGTTTACATGCACTCGTTTCCAGTGTCCCAAACATGGGGTAAGtaaac
tgtttttattttatttttctttcaaaatttattttgcttGTCCTGTATAG
TATCCTTTTCTCGTCGGCCAACTCCTTAAGCCCTTTTTTTTCTTCCCTGT
TAAATTTTCAACCAAATCTCAAACGACAGATCTTTTCTTGTGTTACAATA
GTACCGCTCTCGGTGTAAAATGTCTCATTAGTTGGTCTCATTCCACTGAT
GTCTACTTAATTAAATGCATTAGACTTTTCTTAGACGTCCCCTGATCAGA
AATGTTGTTTCAAATTCTAAACCAGGTAAACAGGGCTaagaaaatcgaat
gttttacGTTGtaaaaaaaccatttaaaatcGAACGCTTTAGTCTTCAAA
AAAGTATATTTTCTAATAGTATTTTTTTCTAAGATAACGTGTTTCATTCA
TAGACCAAACGATCGTTATATCGGTTACCTTCCACTGGCACATATCATGG
AGTTAGCTTGTGGTAAGTCTTCCATAAAAACACTAATAGTCCATgcagaa
aacaaaacaaaaatataaaaagctgGAGCCAAAGTTCTTAAAACCGCCCG
TGTCTCGAGACGTACCCCACCTTTTGCCTCCTACCCTACCTTTTGCCTCC
TACCCCATCTTAAGCAACAAACACCTGTAAACCCCACCATTTCGACTTTT
TTGAAAGATCTTTAACCACCCCCATAGGGTTGGGGTTAAGTATTATATAC
TAGATCTTGCCCCCAATATACAATATGAGGAATGGTGATAAGGCAAGCAT
TTGATAGCTTGAGATTATTTGGTCATCGATACGATAAATTAAATGCGTTG
CGCTTTTCCCGTGTCTAACTATATTGACGATTTTATATGAATCACCTCAT
TCGTTTTAGAATGTGGATGTCTAGCACTGGCTACACCGATTGGATATTCA
AGTGCACTGACCCTATCTGATCAAGTAtgtcttttttatttaaaactatt
ttcacCTTTGCTATCAAATCTTTTTGAAGCTATTAATTGAAGAATTGAAG
CTATTATATTGCAACAAATGTCACCCTTGGACAAAATAGACACATGGACG
CCTCACTATTTTATAACTTTACTAAACGATGACCCATAATAATTTActga
gaaattcaaagaaaactAAGTTCGCATTTGATTTAAAagtttggcccaaa
ttttaatTGTGCTTCATTTTTTATGCAATCTCAAGTCATGAACCATTCAC
TTTTATTCTAGTCTTCCAAGATCAAGAAAGGAACCAAAGGAGATGCGAGT
GTTCTTAGACCAACTTTGATGGCCGCTGTTCCGGTTAGTGTAATATAAGC
TCAATATGCATCTTCACAAATAATTATAAATTGTTAAAATTATTAAGCgc
ttttagtacatgtgtaatCTCATGATAGTGTGACCTCTTGATATGAAAAT
GTACATAAAATAGTCGTTCGTCATTCCATAGTTATTGTACCAAGGTTGTT
AAAGTACCAAGAATCTATTGACATAcccatttttaaaagttttcttcgTC
GTAACTTCTCATTGTAGACTGCGATCCTCTGTCACTTTTTAAATAAACCA
AGTCTCCAGTCTAACAAGAATGAATAAAGCCTTCTAGACGTTGACGTTGA
AATAAGGATCATCTTCCTTTTCTAATCTTCATTCCTTCTTCATCTTTCTA
GATGATCATGGATCGTATGAGAAAAGCTGTTCTAGATAAAGTGGCCGGTG
GCTCACCTTTCGCACAAGCGCTCTTCAATTTCGCTTTCAACTATAAATTA
AGGCTCATCAGAAAAGGCTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016956XLOC_016956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029673-exon-sc0000763-1491911889:123053..123455TCONS_00029673-exon-sc0000763-1491911889:123053..123455Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:123053..123455TCONS_00029673-exon-sc0000763-1510915933:123053..123455Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:123053..123455TCONS_00029673-exon-sc0000763-1575043694:123053..123455Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:130118..130395TCONS_00029673-exon-sc0000763-1491911889:130118..130395Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:130118..130395TCONS_00029673-exon-sc0000763-1510915933:130118..130395Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:130118..130395TCONS_00029673-exon-sc0000763-1575043694:130118..130395Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:130802..130995TCONS_00029673-exon-sc0000763-1491911889:130802..130995Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:130802..130995TCONS_00029673-exon-sc0000763-1510915933:130802..130995Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:130802..130995TCONS_00029673-exon-sc0000763-1575043694:130802..130995Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:131929..131983TCONS_00029673-exon-sc0000763-1491911889:131929..131983Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:131929..131983TCONS_00029673-exon-sc0000763-1510915933:131929..131983Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:131929..131983TCONS_00029673-exon-sc0000763-1575043694:131929..131983Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:132363..132443TCONS_00029673-exon-sc0000763-1491911889:132363..132443Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:132363..132443TCONS_00029673-exon-sc0000763-1510915933:132363..132443Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:132363..132443TCONS_00029673-exon-sc0000763-1575043694:132363..132443Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:132623..132692TCONS_00029673-exon-sc0000763-1491911889:132623..132692Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:132623..132692TCONS_00029673-exon-sc0000763-1510915933:132623..132692Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:132623..132692TCONS_00029673-exon-sc0000763-1575043694:132623..132692Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:133106..133164TCONS_00029673-exon-sc0000763-1491911889:133106..133164Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:133106..133164TCONS_00029673-exon-sc0000763-1510915933:133106..133164Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:133106..133164TCONS_00029673-exon-sc0000763-1575043694:133106..133164Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:133562..133626TCONS_00029673-exon-sc0000763-1491911889:133562..133626Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:133562..133626TCONS_00029673-exon-sc0000763-1510915933:133562..133626Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:133562..133626TCONS_00029673-exon-sc0000763-1575043694:133562..133626Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:133914..133985TCONS_00029673-exon-sc0000763-1491911889:133914..133985Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:133914..133985TCONS_00029673-exon-sc0000763-1510915933:133914..133985Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:133914..133985TCONS_00029673-exon-sc0000763-1575043694:133914..133985Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1491911889:134354..134475TCONS_00029673-exon-sc0000763-1491911889:134354..134475Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1510915933:134354..134475TCONS_00029673-exon-sc0000763-1510915933:134354..134475Clytia hemisphaericaexon
TCONS_00029673-exon-sc0000763-1575043694:134354..134475TCONS_00029673-exon-sc0000763-1575043694:134354..134475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:123053..134475 +
Expression
No biomaterial libraries express this feature.
Blast
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BLAST of TCONS_00029673 vs. Swiss-Prot (Human)
Match: ACSL4 (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 4.166e-121
Identity = 185/397 (46.60%), Postives = 262/397 (65.99%), Query Frame = 3 
Query:  219 FWNTVTFIPWYVLSGNFKRPKYG-HIQGKSITGRPEGPYADINHL-SGSKDGFDGITTLDQLFKKSVEKHGDRGCMGTRELLAEDDEVQPNGRIFKKMILGDYKWMSYNEAYTEVQRVSAGLKAIGVQTKEYVIIFAETKAEWMLSAQACFMRNFPVVTIYATLGDDALVYGFNEAEAKYVMVDAALLP-KLKNLISQLTHVEQIVYFGNAKKALVQ-EFPENIKVYSYQQIKDIGSKLKNFDSPVESPDQDDVAVVMYTSGSTGVPKGVIISHLNVTSCLHALVSSVPNMGPNDRYIGYLPLAHIMELACECGCLALATPIGYSSALTLSDQSSKIKKGTKGDASVLRPTLMAAVPMIMDRMRKAVLDKVAGGSPFAQALFNFAFNYKLRLIRKGY 1397
             ++ + FIPWY L+   K+      I+ K  + +P  PY  + H  S +     G  TLD+LF  +V K G +  +GTRE+L+E++E+QPNG++FKK+ILG+YKWM+Y E    V    +GL A+G++ K  + IF ET+AEWM++AQ CF  NFP+VT+YATLG +A+V+G NE+EA Y++    LL  KLK  +  ++ V+ I+Y  N  KA+ + E+PE  +++S Q ++++GS  +N   P   P   D+A+VMYTSGSTG PKGV++ H N+ + +      +P +GP D YIGYLPLAH++EL  E  C      IGYSS LTLSDQSSKIKKG+KGD +VL+PTLMAAVP IMDR+ K V+ KV   +   + LF   ++YKL  I+KGY
Sbjct:   21 IYSALIFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDN--KAINKAEYPEGFEIHSMQSVEELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGY 415
The following BLAST results are available for this feature:
BLAST of TCONS_00029673 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSL44.166e-12146.60Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
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