TCONS_00029672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029672
Unique NameTCONS_00029672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1391

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029672 ID=TCONS_00029672|Name=TCONS_00029672|organism=Clytia hemisphaerica|type=transcript|length=1391bp
CACGCACCTTTGAACTTTGAACCATTTGGGGGCTTTGGTTGACCGGCACG
CGTCAGAAATAACAAAAATGAGGATTTTGTAGGAGGTTCTTGGTTTGGAT
TCAAGTTTATCAGTGTCTTTACTCTTTTCACCATTAACATTGCCATGGCA
GGATCAAATGACTCTGTTGCTATCAAGCTCTTCACATTATCGTGTAGCGT
TGTTGGATGGTTCTGGAATACCGTTACTTTTATACCCTGGTATGTTTTGa
gtggaaatttcaaaagacCAAAATATGGACACATCCAAGGAAAGTCAATC
ACTGGACGTCCAGAGGGTCCTTATGCTGATATTAACCACCTTTCTGGATC
CAAAGATGGGTTTGATGGGATCACTACCTTGGATCAGTTGTTTAAAAAAT
CTGTTGAAAAACATGGAGACAGAGGGTGCATGGGAACACGAGAGCTTTTG
GCCGAAGATGATGAAGTCCAACCCAATGGAcgtattttcaaaaagatgat
CCTTGGTGACTACAAGTGGATGAGTTACAATGAAGCATATACAGAAGTTC
AACGGGTCAGTGCTGGTCTTAAAGCTATTGGTGTACAAACGAAAGAATAT
GTTATCATCTTTGCCGAAACTAAAGCTGAATGGATGTTGAGTGCTCAAGC
ATGTTTTATGAGAAATTTCCCAGTTGTCACAATTTATGCCACTCTTGGCG
ACGATGCTTTGGTCTACGGATTCAACGAAGCAGAAGCCAAGTATGTCATG
GTGGATGCAGCCCTTCTACccaaactgaaaaatttaatttcccaACTAAC
ACACGTTGAACAAATTGTCTATTTTGGAAATGCCAAGAAAGCGCTTGTAC
AAGAATTCCCTGAAAACATCAAAGTCTATTCTTATCAACAAATCAAAGAT
ATCGGATCCAAACTAAAGAATTTTGATTCACCGGTAGAATCACCGGATCA
AGATGACGTAGCTGTGGTGATGTACACATCAGGATCCACTGGTGTTCCCA
AAGGTGTCATCATTTCTCATTTGAATGTCACATCTTGTTTACATGCACTC
GTTTCCAGTGTCCCAAACATGGGACCAAACGATCGTTATATCGGTTACCT
TCCACTGGCACATATCATGGAGTTAGCTTGTGAATGTGGATGTCTAGCAC
TGGCTACACCGATTGGATATTCAAGTGCACTGACCCTATCTGATCAATCT
TCCAAGATCAAGAAAGGAACCAAAGGAGATGCGAGTGTTCTTAGACCAAC
TTTGATGGCCGCTGTTCCGATGATCATGGATCGTATGAGAAAAGCTGTTC
TAGATAAAGTGGCCGGTGGCTCACCTTTCGCACAAGCGCTCTTCAATTTC
GCTTTCAACTATAAATTAAGGCTCATCAGAAAAGGCTACGA
Run BLAST on NCBI

transcript from alignment at sc0000763:121236..134475+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029672 ID=TCONS_00029672|Name=TCONS_00029672|organism=Clytia hemisphaerica|type=transcript|length=13240bp|location=Sequence derived from alignment at sc0000763:121236..134475+ (Clytia hemisphaerica)
CACGCACCTTTGAACTTTGAACCATTTGGGGGCTTTGGTTGACCGGCACG
CGTCAGAAATAACAAAAATGAGGATTTTGTAGGAGGTTCTTGGTTTGGAT
TCAAGTTTATCAGTGTCTTTACTCTTTTCACCATTAACATTGCCATGGCA
GGATCAAATGACTCTGTTGCTATCAAGCTCTTCACATTATCGTGTAGCGT
TGTTGGATGGTTCTGGAATACCGTTACTTTTATACCCTGGTATGTTTTGa
gtggaaatttcaaaagacCAAAATATGGACACATCCAAGGAAAGTCAATC
ACTGGACGTCCAGAGGGTCCTTATGCTGATATTAACCACCTTTCTGGATC
CAAAGATGGGTTTGATGGGATCACTACCTTGGATCAGTTGTTTAAGTAAG
CTAAATTtatttgcatttttttcttttttttgtgttCTCTNTCTAAGAGG
TTTGGCTTTgcaaaaactgaaattttagCCTGATTTACTGAATTCACAAC
TTGAAAATGGGGGTACTTTTAGCTTACTGTTTATACACATATttccaatc
agaaaatttggaattgggaaatatttttctcacttTGCTCATGCGTgaga
aaatagaccttttcgcctttccgtccCCCatatattgaattgtatgcaag
tattatggtggccgaattgccctGATGAAATTACCTTAGaaagtaccgtc
aactgctacaacttgggatgattggttgaaacatgggactgcatatctgg
cagttagtcacactagcgtcccgcaaaaatgtgtatcaaagattaatgct
ccgaaagcgctatatcgctgacttgactctcaagcaaaaaaatgcaaaac
ttctaaagggattcatgaaaaaataacccggccctttttaatgaaattaa
cattttccagaactttgagaaattgcctaaaatttgagccatagatgaaa
aaaagagccaagccaaccttgaaaactaatttgaagatcaacttcccaag
aaaaagatctactggggaggcggaacccacctagatccgcgcaccaccaG
ATAGGCTgtttcctggaaattttgccggacctcaaataatgacccattta
catatgcggcattatttttactttagcgtatttATAAACCAGGTTTATAA
accaggccttaaaaatcgaagcgctgtctcgggaattgaatgacaaattt
tggttggttgattttggctggctgcacgttttattttgtttcaaactttc
aagttttaattaattgtcttgcgaacttgattcaggtaactctcatcctt
gttgtgcaaatacatcctgtNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNTGTGCATGGTGCTGTCCGGTTTAGAAT
CGGGCCATTCCGTAGTTCCGATAACGCCGGTGTGCGACAAGCATTTTCGG
CATTAAATTTTTGTGGCACAAACTTTTTACACCTCTTTTTCTGTAAAGGG
CTAAAAGGATTCCGAAATTTGGGAGAAAAGTtattaaatttgtaaaatta
CTGGAAAAGAATGAGAgagttttgtttctttttttgaaaattgctaatCT
CGCACTCACAAGTCCGCGAAGCCCCGATTTCGTTTAAATCTTACGATCGT
GGCCTCGCGTGAAAATTACTAACAAGGTACGAAGTCAATTTGttcacttg
aaaacaaaatttagtGTGCCTAACCACGCACCTTTGAACTTTGAACGATT
TTGGAGGCTTTGGTTGACCGGCACGCGTCAGAAATAACAAAAATGAGGAT
TTTGTAGGAGGTTCTTGGTTTGGATTCAAGTTCATCAGTGTCTTTACTCT
TTTCACCATTAACATTGTCATGGCAGGATCAAATGACTCTGTTGCTATCA
AGCTCTTCACATTATCGTGTAGCGTCGTTGGATGGTTCTGGAATACCGTT
ACTTTTATACCCTGGTATGTTTTGagtggaaatttcaaaagacCAAAATA
TGGACACATCCAAGGAAAGTCAATCACTGGACGTCCAGAGGGTCCTTATG
CTGATATTAACCACCTTTCTGGATCCAAAGATGGGTTTGATGGGATCACT
ACCTTGGATCAGTTGTTTAAGTAAGCTTGTGGAtttatttgcattttttt
taattgtgttctttatttttggaaattccAGAAAAGATGTCATGTTGGGA
TATTATCTATATTCACTTATTCAGAGCTTATGTTGTAACTATCTTTTATT
ATCGTTTCATATCGGACCAGTTatatatttgtttttgtttgtttttgtga
cCTCGCTTAGTCTTGCTTTTACAGATCTGCCAACCTCtaagaggaccctg
ccgacgcaccggacttaacgaacaccggacacgcgaaagtccggtgtaaa
atgagaattttttttaccaccggacaatctctacacNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNcgaacttgattcagg
taactctcatccttgttgtgcaaatacatcctgtagatgactgatgttgt
tttttctgaaagctagatttcctagtgtgactaactgtttggtcagtatt
ttcacttactgtaaaatcgaaagaaaaaTCGTGTAATTTCAGGTAATTTT
TAATACACCTTTCGTTAACTCAAATCAactgactttggaggttcggtgaa
atggtggcagaATTAcattcccatgttttgtcagatagtcccaagttaga
gcagttgacggtatgcaaaacatttgcaaaaagaaagtattaacataaaa
cttacatgcataaggCGAGGGGAATTAATGAACGGGTTTACCGTCGcgtt
ggaaaaaatatttgatgcggcaaaagttcattattcattatttttcaata
caCATCGACCCGAACATTCAGTGTAAAGAACGTTGCCTTTTTGCCACTTT
TTcccattgaaaacaaaaaaccttTGGATATTTAGACTCCCAGAACATTG
TAGAATCTTTTGATTATCAAActaagagaaaaataaagagTTTTAACCGT
TAAATCTAATCATATTCCCTTCGTGTTTAAACTTTCACAAAGTCATGTTC
CCTCATgcgccgccatcttgaatttagaATTAGAAGCATGTCGGAAACTA
GAACCAAGTTTATCTCACCCAATGCAGATACTGGAACTGgaaatatttct
gaaaaaaaaaaaaagaacttttattaaaataatgaacttttttgagcggc
AGCCCGCGGGCATGCGGGCAGTCGACGGTAAACCCGTTCATTGATTCCCC
TCGcctaattggcattatattaaagtgtaatcttgtacaCACATCAAAAa
tctttaccccctggatatccgcccctggatatccgatatccgatatcctc
aataTCGTGTCAGCACCTTAGACACAgattatttctggaaaagcccattg
aattaaaaaaggcaaaaaagaaagGAATTTCCTAAGCATTTTAcgaaagt
acatggattttcatcagaatttccagggttggtctaaaaagcagggtagc
caatggggtagccaattgggctaggttatggggtacctctttttgcctaa
acttttgaaatctgaaacctgttttcatgtggaaataactatacaacatc
ttgttaatgattccatgtaataaaatttaagattcctttcgccacaatag
ccttttttccaaaggtactaaactttgttacttctcaagagacctggcgc
cattttgtcttccttcatggcttcgtttgaaaatttacagacccgaataa
aaaatatatacaaaacagtttttaatattttagatttagattttatttat
gtttttaattgttatttccgtgaagctgtaattcgatgataatagctttg
aaatcgcctttgggccatatgatctctaatcttgtcatatcttaacaatc
ctttgttatcgaatctattgtttaatttatatcatgtttagatgtttcaa
acaattaattcctttcaaaattttttaatatggcagcttatgatagatac
aaaaagtcttttgaaatagctctattataatgaagctctatttcttactc
ctcgtgcattaacacgtggtaatttatatctttgtttatcTTTGTAATCA
TACATaatcaatctaagtatcaatcagattcgtgctccctggtcagtaaa
atgtggttctatgcattcattttcggtatttctattctggtctgtaaaat
atttaggtaccccacaacctagcccaattggctaccccaattggctaccc
tgctttttagaccaacccgaatttccaaaaaattcaaaaaattatttccc
cGGCTCGAAAAAATTTCTGGAATGGTCCATTGTTTGATTGGATCGATAAA
ATCGATATTATATGGGATCAATATAATTCTACGATCAATAATTTGATTGG
ATCAATGTAAGATTGATCAGTAAGCGATAAATGATCCTGACCGAAAAAAT
CTTAAGTATTGATCCCCCTTCGATCTTTTATCGGAATAGATGAGTAATTT
ATCAATCTTTTATCGATTCTTCATCGATCTGTTCCAATTATCGACCCTAT
TGAGCCTgagccccgtcagcaccttggactgactaccaaTTCTCCTCAAA
TAgcatgggttgacccaggcaaaggttcattcacttgccaataACTGCTG
CAAGTGGGAATCAAACCTCAGTTGTCTGTGCAACAAgaaaggtcaatgac
cactaatACCACAGCGTAcaagtgttttttatttttttctatttctattt
ggttgagttgcaggaggctttgaggcctatttttgcAACTATAGACGTTT
TTAATGAGCGCCCTGTCAGCACCTtagactgactacccaattcccctcgc
ATGGCATAGGTTGGCTCGGGCGAATGTTCGtttacttgccaagtgaaccg
ctgcgagtgggaatcaaacctcagtcgcctgtgcagcaacctagctcaat
gaccactataccaccaACGTTTACAGGGATCGCACCACacagatttttaa
aagaaatacgcaGATGGGTTCCTGTCTACTCTGGGGCTAAATAACActtc
ttaaatatttttctttactgttggtttttaatttctctaaacctttatgt
ttctgtatgttttcatgcaaagtgtgatctgatccttaggcgaaccctaa
aaatatttttgtttccggtccaccgggtgacgaaaaatacactcacccgg
ccggccgcaaaaaatttttttttgctaaatttcgatcccaaaactcgatt
ttttaaagcactcgtaGAAGTTAAAATGATGGTCTTCTTTACCTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTAGGCGtgcgattattcaaatacttaattttcatcgtttatatt
ttcaactgtgttacaatatctctaagaactggacactctctttcattttg
aatatttatcgtcaattgctaaaggctccaaactgtgattacgaagtgaa
cttttttgagaaaaaagtagagtgagagaaacatttccccaattttttaa
atcctcactttatgaatgtttctttttattttactcacaagtcagcatga
ttccttttataaaaacaaagctgtttacttactgaaaagtccccactttg
taaatgtttctatttattttactcacaaatcagcatgattcttttataaa
aaccaagttgtataaaaaaaaaaaacattcttaaaggttgagttgcaagc
aagaattaacaaaaacaatgcagggtttatttgagatgaataaaatttca
tttctataacaatgatcggcgtgcattttacagtagaatataaaatatca
cgtgcgataaatcacacgcctcaaaaactgatttacgaaagttttccaaa
caaacaaactaaccctaaccctaacgatgatgtacgaaaaaaaaatgcgg
ccgggtgacgacgaaataaattttcacccggccggtggaccggaaacaaa
agattttttcgggttcgccttaaaatgcaaaaatgaagacattctattgc
gttctctaaaagtgcacacacatgtaaatagagctttgtgaatgccataa
aatttttcccctatactgggacctaaaatttcaTCAGActggggggacct
tgttctcaggggggacctaaatttggcaggagggacctagaaccccagtc
ggagccatggTTTACCTTGTTAAATTTGTTAAATTCAATGAAAGCTCTTA
GTACCTGTCAAGCATGAGTTACATTGAATAAGTCAGCTTGATAAAAACTA
TTTGTTGTGTTTGcacttcaaaaaatattcttgaaTCATTGAATATGCGA
GCAGTCAGAAAGCAAGCAAAAGAAAGCAAAAGATTTTAAGTAAAAAGAAG
ACTTTGTTGGATTGGAGAACAGAAACTAATAAATAGAAACTAGCCCCTGT
ATAAGgtaaattgtttattttgttcaatttgccaaatttttctcAATCAA
TCACCACCAtatccattgttttattttgtcccatcaaaaaagtgtgatgg
atttgttaaaaaaaataatatccaATCAAATGAGAGTTAAGtgctttcat
ccaatcagattgataagtaatcgataaatGAATGTTTGACCAGATATGAC
TTTTTTCGGTCgccattttttattgtttagttTTGACTTGATCATTCACA
ACCAtgtccccgtgtattccagcctttatttacgttacttatggacgcca
gagaatatacCCTgatgttggctgatgcgaggcaaaaaaaatcattttat
attattttgtatGTACTACTTCATGATTTAGTATGAATTAGGTTCCTAAC
ccaagaatgctgtaagaatattttcccaaaaaagttaagattgCAGATGG
CTTGTTTTTGGGGAAATTCAGgtttcaaaaaaagaataagTCATTAGTCA
TAATACCCTACAAGATGTGTTTGTAATAAAAATGAGAGTTTTACACTTTT
GCTTTATATTCTTAGTTAGTAATGAAAGCAATGCAATATATATTCACAGT
AAGGAGAATAAACTCGTGCCAAAAGCAAAACTTTTCtaatattaaaacaa
aaaattgaatctGGGACTTGAAATGAATCAGAATCCCCTCCCTATAAATT
GAGGATACTTCAAGATTTGGAAATCttctaatttaaattttttgattacC
TTGCTGATGAAAAGACCTTTCTTTGAACTTAGCCTTGGATTTGGCCTGTT
ATTTGGAAATGTTTAttgatttgatctttgaaattttgattagtCAACAT
GAcattagcaaaaggtctattgtacATTGACCTCTTCTTAAAAACCTTAC
TGATTACTGTAGCAAAAAGGCTAAATAAAATCTTATAAGTGAATTATTAT
TTGTTCTTATCTGTTCATGTTTGATTATACTTTTCATTTTAACACAGTGA
TATATGATAAATAAAGATTAACAAAGTATATTTTGAGGGTGCATTTACAG
ggaattttgtatttttgtagaatGCAATCAACAGAAACCCAAACAACATA
GAATTTATAGATAATATAATATTTGAAGATATCAAACCAACGATCCTTTA
TCAATCCTCTAGAAACTTGTTTCAAAATTCACAGGTTGGGTTTTGCCAAT
CCTTAAGGGAGTGTTTATTGAAAGGGTTGTTTTTAACGTTCAAAAGGTAA
TTCATTAAATGATCACCTTTTATTAAGTAGAGATTATCAAAGGGGGAGGC
ATCTAATTGAATTATTACTACTATATTTAGTCAAAGTAGgcaacacccct
ccaaccccaCCTAAAAAAAGTGAGGATGGGTGTAGGTGGGGGTGCTACAT
AggtttaccccccccccccccccNGTATCCATTTGAAGTATTACTACTAT
ATATAGTCATAGTAGgcaacacccctccaaccccgGCTAAAAAAGTGAGG
ATGGGTGTAGGTGGGGGTGCTACATAGGTTTACCCCCCCCCTGAAATTTC
TCAtcaacccaacccccacctttttttttaaatccaaaaATCCTCAACGG
GTTATAACGGAATTATTTTATTTCTACTTTAGAAAATCTGTTGAAAAACA
TGGAGACAGAGGGTGCATGGGAACACGAGAGCTTTTGGCCGAAGATGATG
AAGTCCAACCCAATGGAcgtattttcaaaaagatgatCCTTGGTGACTAC
AAGTGGATGAGTTACAATGAAGCATATACAGAAGTTCAACGGGTCAGTGC
TGGTCTTAAAGCTATTGGTGTACAAACGAAAGAATATGTTATCATCTTTG
CCGAAACTAAAGCTGAATGGATGTTGAGTGCTCAAGCATGTTTTATGAGA
AATTTCCCAGGTATTTTGGATAAGTTATTGCTTTAGTTTACCCAAAGTTA
TACTCTTAAAGTGTATAGGGACAAGAACAACCGCTGTGAgtgtttctcaa
aaaaaaagtctCATATAGCCACTGTTCATGTAGAATAAAAGTGGGAAAGA
TTGCATCCAAAAGACTGTTAACATCGATTTTTTATAAATCATTACCGTAT
ACACAACTGCTATTTACGTAACTTTGCAGATTATTGTGTCAGTCATTAAA
TTTTTGTCCTCTTGAGTTTAAGTAAAAGATTATGAGCAGCATTTGCCAAT
TCTCATCAAAATCAAAGTAGATTGATTTGGAAAAAAGCTTTTCTGTGATT
GTGTAGCAACCATAGCGTTATGATGAAACTTTGTACAATCAAATGTTGCT
TTACCTTCTTCTCTAGTTGTCACAATTTATGCCACTCTTGGCGACGATGC
TTTGGTCTACGGATTCAACGAAGCAGAAGCCAAGTATGTCATGGTGGATG
CAGCCCTTCTACccaaactgaaaaatttaatttcccaACTAACACACGTT
GAACAAATTGTCTATTTTGGAAATGCCAAGAAAGCGCTTGTACAAGAATT
CCCTGAAAACATCAAAGTCTATTCTTATCAACAAATCAAAGATATCGGAT
CCAAACTAAAGAATTGTAAGTGTTTTCTTCGCTATCATTATTCAGAACTA
GTCACATTCTCTAACCCaaagatttgtttttcaaagtcggaaagatttca
ttaaaattttttaaaagaacaagttgtaacaaatggATCATTTCTTTTGG
AACACAAAATCTCTGAAATGTTAGCAAATCCATATATATAACGTTGNTTG
GTGTACAAACCAAAGAATATGTTATCATCTTTGCCGAAACTAAAGCTGAA
TGGATGTTGAGTGCTCAAGCATGTTTCATGAGAAATTTCCCAGGTATTTT
GGATAAGTTATTGCTTTAGTTTACCCAAAGTTATACTCTTAAAGTGTATA
GGGACAAGAACAGCCGCTGTGAgtgtttctcaaaaaaaaagtctCATATA
GCCACTGTTCATGTAGAATAAAAGTGGGAAAGATTGCATCCAAAAGACTG
TTAACATCGATTTTTTATAAATCATTACCGTATACACAACTGCTATTTAC
GTAACTTTGCAGATTATTGTGTCAGTCATTAAATTTTTGTCCTCTTGAGT
TTAAGTAAAAGATTATGAGCAGCATTTGCCAATTCTCATCAAAATCAAAG
TAGATTGATTTGGAAAAAAGCTTTTCTGTGATTGTGTAGCAACCATAGCG
TTATGATGAAACTTTGTACAATCAAATGTTGCTTTACCTTCTTCTCTAGT
TGTCACAATTTATGCCACTCTTGGCGACGATGCTTTGGTCTACGGATTCA
ACGAAGCAGAAGCCAAGTATGTCATGGTGGATGCAGCCCTTCTACccaaa
ctgaaaaatttaatttcccaACTAACACACGTTGAACAAATTGTCTATTT
TGGAAATGCCAAGAAAGCGCTTGTACAAGAATTCCCTGAAAACATCAAAG
TCTATTCTTATCAACAAATCAAAGATATCGGATCCAAACTAAAGAATTGT
AAGTGTTTTCTTCGCTATCATTATTCAGAACTAGTCACATTCTCTAACCC
aaagatttgtttttcaaagtcggaaagatttcattaaaattttttaaaag
aacaagttgtaacaaatggATCATTTCTTTTGGAACACAAAATCTCTGAA
ATGTTAGCAAATCCATATATATAACGTTGTAAGGAAGCTATTACGGAGTG
AGTTTAAGTCTGGCCATGTCTAATTGAAAAGTGAGGTCTAGAACACTGGC
ATCACTCGATAAAGTTCTTTCCAAGAACAAAAGCAAGCCCCCTTTTAGTT
TCATTAACAAATAACAACATCGTCATATCTCTCTTTTGAGATGATTCTct
aaacttttatttattttttgaatatagTTGATTCACCGGTAGAATCACCG
GATCAAGATGACGTAGCTGTGGTGATGTACACATCAGGATCCACTGGTGT
TCCCAAAGGTACcatatattttcttttcttgtgtTGTGTGTAATGCTCAC
GTTTGGTTTTAACTGTGGATGGActtactttttttaggtttttattttct
gactttaATTTGAACTCTGAATTTATTGCAGCTTTTTAGGtgatattttt
acaattttgaagtaaaaaattccAATACCTTTTTTAGGTGTCATCATTTC
TCATTTGAATGTCACATCTTGTTTACATGCACTCGTTTCCAGTGTCCCAA
ACATGGGGTAAGtaaactgtttttattttatttttctttcaaaatttatt
ttgcttGTCCTGTATAGTATCCTTTTCTCGTCGGCCAACTCCTTAAGCCC
TTTTTTTTCTTCCCTGTTAAATTTTCAACCAAATCTCAAACGACAGATCT
TTTCTTGTGTTACAATAGTACCGCTCTCGGTGTAAAATGTCTCATTAGTT
GGTCTCATTCCACTGATGTCTACTTAATTAAATGCATTAGACTTTTCTTA
GACGTCCCCTGATCAGAAATGTTGTTTCAAATTCTAAACCAGGTAAACAG
GGCTaagaaaatcgaatgttttacGTTGtaaaaaaaccatttaaaatcGA
ACGCTTTAGTCTTCAAAAAAGTATATTTTCTAATAGTATTTTTTTCTAAG
ATAACGTGTTTCATTCATAGACCAAACGATCGTTATATCGGTTACCTTCC
ACTGGCACATATCATGGAGTTAGCTTGTGGTAAGTCTTCCATAAAAACAC
TAATAGTCCATgcagaaaacaaaacaaaaatataaaaagctgGAGCCAAA
GTTCTTAAAACCGCCCGTGTCTCGAGACGTACCCCACCTTTTGCCTCCTA
CCCTACCTTTTGCCTCCTACCCCATCTTAAGCAACAAACACCTGTAAACC
CCACCATTTCGACTTTTTTGAAAGATCTTTAACCACCCCCATAGGGTTGG
GGTTAAGTATTATATACTAGATCTTGCCCCCAATATACAATATGAGGAAT
GGTGATAAGGCAAGCATTTGATAGCTTGAGATTATTTGGTCATCGATACG
ATAAATTAAATGCGTTGCGCTTTTCCCGTGTCTAACTATATTGACGATTT
TATATGAATCACCTCATTCGTTTTAGAATGTGGATGTCTAGCACTGGCTA
CACCGATTGGATATTCAAGTGCACTGACCCTATCTGATCAAGTAtgtctt
ttttatttaaaactattttcacCTTTGCTATCAAATCTTTTTGAAGCTAT
TAATTGAAGAATTGAAGCTATTATATTGCAACAAATGTCACCCTTGGACA
AAATAGACACATGGACGCCTCACTATTTTATAACTTTACTAAACGATGAC
CCATAATAATTTActgagaaattcaaagaaaactAAGTTCGCATTTGATT
TAAAagtttggcccaaattttaatTGTGCTTCATTTTTTATGCAATCTCA
AGTCATGAACCATTCACTTTTATTCTAGTCTTCCAAGATCAAGAAAGGAA
CCAAAGGAGATGCGAGTGTTCTTAGACCAACTTTGATGGCCGCTGTTCCG
GTTAGTGTAATATAAGCTCAATATGCATCTTCACAAATAATTATAAATTG
TTAAAATTATTAAGCgcttttagtacatgtgtaatCTCATGATAGTGTGA
CCTCTTGATATGAAAATGTACATAAAATAGTCGTTCGTCATTCCATAGTT
ATTGTACCAAGGTTGTTAAAGTACCAAGAATCTATTGACATAcccatttt
taaaagttttcttcgTCGTAACTTCTCATTGTAGACTGCGATCCTCTGTC
ACTTTTTAAATAAACCAAGTCTCCAGTCTAACAAGAATGAATAAAGCCTT
CTAGACGTTGACGTTGAAATAAGGATCATCTTCCTTTTCTAATCTTCATT
CCTTCTTCATCTTTCTAGATGATCATGGATCGTATGAGAAAAGCTGTTCT
AGATAAAGTGGCCGGTGGCTCACCTTTCGCACAAGCGCTCTTCAATTTCG
CTTTCAACTATAAATTAAGGCTCATCAGAAAAGGCTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016956XLOC_016956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029672-exon-sc0000763-1491911889:121236..121630TCONS_00029672-exon-sc0000763-1491911889:121236..121630Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:121236..121630TCONS_00029672-exon-sc0000763-1510915933:121236..121630Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:121236..121630TCONS_00029672-exon-sc0000763-1575043694:121236..121630Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:130118..130395TCONS_00029672-exon-sc0000763-1491911889:130118..130395Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:130118..130395TCONS_00029672-exon-sc0000763-1510915933:130118..130395Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:130118..130395TCONS_00029672-exon-sc0000763-1575043694:130118..130395Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:130802..130995TCONS_00029672-exon-sc0000763-1491911889:130802..130995Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:130802..130995TCONS_00029672-exon-sc0000763-1510915933:130802..130995Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:130802..130995TCONS_00029672-exon-sc0000763-1575043694:130802..130995Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:131929..131983TCONS_00029672-exon-sc0000763-1491911889:131929..131983Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:131929..131983TCONS_00029672-exon-sc0000763-1510915933:131929..131983Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:131929..131983TCONS_00029672-exon-sc0000763-1575043694:131929..131983Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:132363..132443TCONS_00029672-exon-sc0000763-1491911889:132363..132443Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:132363..132443TCONS_00029672-exon-sc0000763-1510915933:132363..132443Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:132363..132443TCONS_00029672-exon-sc0000763-1575043694:132363..132443Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:132623..132692TCONS_00029672-exon-sc0000763-1491911889:132623..132692Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:132623..132692TCONS_00029672-exon-sc0000763-1510915933:132623..132692Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:132623..132692TCONS_00029672-exon-sc0000763-1575043694:132623..132692Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:133106..133164TCONS_00029672-exon-sc0000763-1491911889:133106..133164Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:133106..133164TCONS_00029672-exon-sc0000763-1510915933:133106..133164Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:133106..133164TCONS_00029672-exon-sc0000763-1575043694:133106..133164Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:133562..133626TCONS_00029672-exon-sc0000763-1491911889:133562..133626Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:133562..133626TCONS_00029672-exon-sc0000763-1510915933:133562..133626Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:133562..133626TCONS_00029672-exon-sc0000763-1575043694:133562..133626Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:133914..133985TCONS_00029672-exon-sc0000763-1491911889:133914..133985Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:133914..133985TCONS_00029672-exon-sc0000763-1510915933:133914..133985Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:133914..133985TCONS_00029672-exon-sc0000763-1575043694:133914..133985Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1491911889:134354..134475TCONS_00029672-exon-sc0000763-1491911889:134354..134475Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1510915933:134354..134475TCONS_00029672-exon-sc0000763-1510915933:134354..134475Clytia hemisphaericaexon
TCONS_00029672-exon-sc0000763-1575043694:134354..134475TCONS_00029672-exon-sc0000763-1575043694:134354..134475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:121236..134475 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.3476	22.0994	4.48631	2.31078	1.0473	4.03272	3.68555	10.0647	9.59872	14.1738	18.0952	11.8196	17.9538	26.7383	15.7524	18.038	21.8652	17.9655	16.7669	21.5923	19.829	28.2662	18.0215	23.3579	19.6949	18.2679	26.0288	18.4522	27.1194	22.644
Blast
[Close]
BLAST of TCONS_00029672 vs. Swiss-Prot (Human)
Match: ACSL4 (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 3.183e-121
Identity = 185/397 (46.60%), Postives = 262/397 (65.99%), Query Frame = 1 
Query:  211 FWNTVTFIPWYVLSGNFKRPKYG-HIQGKSITGRPEGPYADINHL-SGSKDGFDGITTLDQLFKKSVEKHGDRGCMGTRELLAEDDEVQPNGRIFKKMILGDYKWMSYNEAYTEVQRVSAGLKAIGVQTKEYVIIFAETKAEWMLSAQACFMRNFPVVTIYATLGDDALVYGFNEAEAKYVMVDAALLP-KLKNLISQLTHVEQIVYFGNAKKALVQ-EFPENIKVYSYQQIKDIGSKLKNFDSPVESPDQDDVAVVMYTSGSTGVPKGVIISHLNVTSCLHALVSSVPNMGPNDRYIGYLPLAHIMELACECGCLALATPIGYSSALTLSDQSSKIKKGTKGDASVLRPTLMAAVPMIMDRMRKAVLDKVAGGSPFAQALFNFAFNYKLRLIRKGY 1389
             ++ + FIPWY L+   K+      I+ K  + +P  PY  + H  S +     G  TLD+LF  +V K G +  +GTRE+L+E++E+QPNG++FKK+ILG+YKWM+Y E    V    +GL A+G++ K  + IF ET+AEWM++AQ CF  NFP+VT+YATLG +A+V+G NE+EA Y++    LL  KLK  +  ++ V+ I+Y  N  KA+ + E+PE  +++S Q ++++GS  +N   P   P   D+A+VMYTSGSTG PKGV++ H N+ + +      +P +GP D YIGYLPLAH++EL  E  C      IGYSS LTLSDQSSKIKKG+KGD +VL+PTLMAAVP IMDR+ K V+ KV   +   + LF   ++YKL  I+KGY
Sbjct:   21 IYSALIFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDN--KAINKAEYPEGFEIHSMQSVEELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGY 415
The following BLAST results are available for this feature:
BLAST of TCONS_00029672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSL43.183e-12146.60Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
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