TCONS_00029669 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029669
Unique NameTCONS_00029669
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029669 ID=TCONS_00029669|Name=TCONS_00029669|organism=Clytia hemisphaerica|type=transcript|length=1870bp
CAATCATTGGAAATACGTTTAATGTTCAATACTTGTGTGATCTGTTTCAG
AGTTTCTGGGCAAAGGTTATTTGCCTTGTGCAACATCTTGGCATTTTGGA
GGAGGAGAAAAATAGCCGTGTGCATCCGTGTGCATGGTGCTGTCCGGTTT
AGAATCGGGCCATTCCGTAGTTCCGATAACGCCGGTGTGCGACAAGCATT
TTCGGCATTAAATTTTTGTGGCACAAACTTTTTACACCTCTTTTTCTGTA
AAGGGCTAAAAGGATTCCGAAATTTGGAAGAAAAGTTATTAAACTTGTAA
AATTACTGGAAAAGAATGAGAGagttttgcttctttttttgaaaattgca
aatCTCGCACTCACAAGTCCGCGAAGCCCCGATTTCGTGTAAATCTTACG
ATCGTGGCCTCACGTAAAAATTACTAACAAGGTACGAAGTCAATTTGTTC
ACTTGAAAACAAAGTTTAGTTAGTCTAACCACGCACCTTTGAACTTTGAA
CCATTTGGGGGCTTTGGTTGACCGGCACGCGTCAGAAATAACAAAAATGA
GGATTTTGTAGGAGGTTCTTGGTTTGGATTCAAGTTTATCAGTGTCTTTA
CTCTTTTCACCATTAACATTGCCATGGCAGGATCAAATGACTCTGTTGCT
ATCAAGCTCTTCACATTATCGTGTAGCGTTGTTGGATGGTTCTGGAATAC
CGTTACTTTTATACCCTGGTATGTTTTGagtggaaatttcaaaagacCAA
AATATGGACACATCCAAGGAAAGTCAATCACTGGACGTCCAGAGGGTCCT
TATGCTGATATTAACCACCTTTCTGGATCCAAAGATGGGTTTGATGGGAT
CACTACCTTGGATCAGTTGTTTAAAAAATCTGTTGAAAAACATGGAGACA
GAGGGTGCATGGGAACACGAGAGCTTTTGGCCGAAGATGATGAAGTCCAA
CCCAATGGAcgtattttcaaaaagatgatCCTTGGTGACTACAAGTGGAT
GAGTTACAATGAAGCATATACAGAAGTTCAACGGGTCAGTGCTGGTCTTA
AAGCTATTGGTGTACAAACGAAAGAATATGTTATCATCTTTGCCGAAACT
AAAGCTGAATGGATGTTGAGTGCTCAAGCATGTTTTATGAGAAATTTCCC
AGTTGTCACAATTTATGCCACTCTTGGCGACGATGCTTTGGTCTACGGAT
TCAACGAAGCAGAAGCCAAGTATGTCATGGTGGATGCAGCCCTTCTACcc
aaactgaaaaatttaatttcccaACTAACACACGTTGAACAAATTGTCTA
TTTTGGAAATGCCAAGAAAGCGCTTGTACAAGAATTCCCTGAAAACATCA
AAGTCTATTCTTATCAACAAATCAAAGATATCGGATCCAAACTAAAGAAT
TTTGATTCACCGGTAGAATCACCGGATCAAGATGACGTAGCTGTGGTGAT
GTACACATCAGGATCCACTGGTGTTCCCAAAGGTGTCATCATTTCTCATT
TGAATGTCACATCTTGTTTACATGCACTCGTTTCCAGTGTCCCAAACATG
GGACCAAACGATCGTTATATCGGTTACCTTCCACTGGCACATATCATGGA
GTTAGCTTGTGAATGTGGATGTCTAGCACTGGCTACACCGATTGGATATT
CAAGTGCACTGACCCTATCTGATCAATCTTCCAAGATCAAGAAAGGAACC
AAAGGAGATGCGAGTGTTCTTAGACCAACTTTGATGGCCGCTGTTCCGAT
GATCATGGATCGTATGAGAAAAGCTGTTCTAGATAAAGTGGCCGGTGGCT
CACCTTTCGCACAAGCGCTCTTCAATTTCGCTTTCAACTATAAATTAAGG
CTCATCAGAAAAGGCTACGA
Run BLAST on NCBI

transcript from alignment at sc0000763:120757..134475+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029669 ID=TCONS_00029669|Name=TCONS_00029669|organism=Clytia hemisphaerica|type=transcript|length=13719bp|location=Sequence derived from alignment at sc0000763:120757..134475+ (Clytia hemisphaerica)
CAATCATTGGAAATACGTTTAATGTTCAATACTTGTGTGATCTGTTTCAG
AGTTTCTGGGCAAAGGTTATTTGCCTTGTGCAACATCTTGGCATTTTGGA
GGAGGAGAAAAATAGCCGTGTGCATCCGTGTGCATGGTGCTGTCCGGTTT
AGAATCGGGCCATTCCGTAGTTCCGATAACGCCGGTGTGCGACAAGCATT
TTCGGCATTAAATTTTTGTGGCACAAACTTTTTACACCTCTTTTTCTGTA
AAGGGCTAAAAGGATTCCGAAATTTGGAAGAAAAGTTATTAAACTTGTAA
AATTACTGGAAAAGAATGAGAGagttttgcttctttttttgaaaattgca
aatCTCGCACTCACAAGTCCGCGAAGCCCCGATTTCGTGTAAATCTTACG
ATCGTGGCCTCACGTAAAAATTACTAACAAGGTACGAAGTCAATTTGTTC
ACTTGAAAACAAAGTTTAGTTAGTCTAACCACGCACCTTTGAACTTTGAA
CCATTTGGGGGCTTTGGTTGACCGGCACGCGTCAGAAATAACAAAAATGA
GGATTTTGTAGGAGGTTCTTGGTTTGGATTCAAGTTTATCAGTGTCTTTA
CTCTTTTCACCATTAACATTGCCATGGCAGGATCAAATGACTCTGTTGCT
ATCAAGCTCTTCACATTATCGTGTAGCGTTGTTGGATGGTTCTGGAATAC
CGTTACTTTTATACCCTGGTATGTTTTGagtggaaatttcaaaagacCAA
AATATGGACACATCCAAGGAAAGTCAATCACTGGACGTCCAGAGGGTCCT
TATGCTGATATTAACCACCTTTCTGGATCCAAAGATGGGTTTGATGGGAT
CACTACCTTGGATCAGTTGTTTAAGTAAGCTAAATTtatttgcatttttt
tcttttttttgtgttCTCTNTCTAAGAGGTTTGGCTTTgcaaaaactgaa
attttagCCTGATTTACTGAATTCACAACTTGAAAATGGGGGTACTTTTA
GCTTACTGTTTATACACATATttccaatcagaaaatttggaattgggaaa
tatttttctcacttTGCTCATGCGTgagaaaatagaccttttcgcctttc
cgtccCCCatatattgaattgtatgcaagtattatggtggccgaattgcc
ctGATGAAATTACCTTAGaaagtaccgtcaactgctacaacttgggatga
ttggttgaaacatgggactgcatatctggcagttagtcacactagcgtcc
cgcaaaaatgtgtatcaaagattaatgctccgaaagcgctatatcgctga
cttgactctcaagcaaaaaaatgcaaaacttctaaagggattcatgaaaa
aataacccggccctttttaatgaaattaacattttccagaactttgagaa
attgcctaaaatttgagccatagatgaaaaaaagagccaagccaaccttg
aaaactaatttgaagatcaacttcccaagaaaaagatctactggggaggc
ggaacccacctagatccgcgcaccaccaGATAGGCTgtttcctggaaatt
ttgccggacctcaaataatgacccatttacatatgcggcattatttttac
tttagcgtatttATAAACCAGGTTTATAAaccaggccttaaaaatcgaag
cgctgtctcgggaattgaatgacaaattttggttggttgattttggctgg
ctgcacgttttattttgtttcaaactttcaagttttaattaattgtcttg
cgaacttgattcaggtaactctcatccttgttgtgcaaatacatcctgtN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTGTGCATGGTGCTGTCCGGTTTAGAATCGGGCCATTCCGTAGTTCCGA
TAACGCCGGTGTGCGACAAGCATTTTCGGCATTAAATTTTTGTGGCACAA
ACTTTTTACACCTCTTTTTCTGTAAAGGGCTAAAAGGATTCCGAAATTTG
GGAGAAAAGTtattaaatttgtaaaattaCTGGAAAAGAATGAGAgagtt
ttgtttctttttttgaaaattgctaatCTCGCACTCACAAGTCCGCGAAG
CCCCGATTTCGTTTAAATCTTACGATCGTGGCCTCGCGTGAAAATTACTA
ACAAGGTACGAAGTCAATTTGttcacttgaaaacaaaatttagtGTGCCT
AACCACGCACCTTTGAACTTTGAACGATTTTGGAGGCTTTGGTTGACCGG
CACGCGTCAGAAATAACAAAAATGAGGATTTTGTAGGAGGTTCTTGGTTT
GGATTCAAGTTCATCAGTGTCTTTACTCTTTTCACCATTAACATTGTCAT
GGCAGGATCAAATGACTCTGTTGCTATCAAGCTCTTCACATTATCGTGTA
GCGTCGTTGGATGGTTCTGGAATACCGTTACTTTTATACCCTGGTATGTT
TTGagtggaaatttcaaaagacCAAAATATGGACACATCCAAGGAAAGTC
AATCACTGGACGTCCAGAGGGTCCTTATGCTGATATTAACCACCTTTCTG
GATCCAAAGATGGGTTTGATGGGATCACTACCTTGGATCAGTTGTTTAAG
TAAGCTTGTGGAtttatttgcattttttttaattgtgttctttatttttg
gaaattccAGAAAAGATGTCATGTTGGGATATTATCTATATTCACTTATT
CAGAGCTTATGTTGTAACTATCTTTTATTATCGTTTCATATCGGACCAGT
TatatatttgtttttgtttgtttttgtgacCTCGCTTAGTCTTGCTTTTA
CAGATCTGCCAACCTCtaagaggaccctgccgacgcaccggacttaacga
acaccggacacgcgaaagtccggtgtaaaatgagaattttttttaccacc
ggacaatctctacacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNcgaacttgattcaggtaactctcatccttgttgtgc
aaatacatcctgtagatgactgatgttgttttttctgaaagctagatttc
ctagtgtgactaactgtttggtcagtattttcacttactgtaaaatcgaa
agaaaaaTCGTGTAATTTCAGGTAATTTTTAATACACCTTTCGTTAACTC
AAATCAactgactttggaggttcggtgaaatggtggcagaATTAcattcc
catgttttgtcagatagtcccaagttagagcagttgacggtatgcaaaac
atttgcaaaaagaaagtattaacataaaacttacatgcataaggCGAGGG
GAATTAATGAACGGGTTTACCGTCGcgttggaaaaaatatttgatgcggc
aaaagttcattattcattatttttcaatacaCATCGACCCGAACATTCAG
TGTAAAGAACGTTGCCTTTTTGCCACTTTTTcccattgaaaacaaaaaac
cttTGGATATTTAGACTCCCAGAACATTGTAGAATCTTTTGATTATCAAA
ctaagagaaaaataaagagTTTTAACCGTTAAATCTAATCATATTCCCTT
CGTGTTTAAACTTTCACAAAGTCATGTTCCCTCATgcgccgccatcttga
atttagaATTAGAAGCATGTCGGAAACTAGAACCAAGTTTATCTCACCCA
ATGCAGATACTGGAACTGgaaatatttctgaaaaaaaaaaaaagaacttt
tattaaaataatgaacttttttgagcggcAGCCCGCGGGCATGCGGGCAG
TCGACGGTAAACCCGTTCATTGATTCCCCTCGcctaattggcattatatt
aaagtgtaatcttgtacaCACATCAAAAatctttaccccctggatatccg
cccctggatatccgatatccgatatcctcaataTCGTGTCAGCACCTTAG
ACACAgattatttctggaaaagcccattgaattaaaaaaggcaaaaaaga
aagGAATTTCCTAAGCATTTTAcgaaagtacatggattttcatcagaatt
tccagggttggtctaaaaagcagggtagccaatggggtagccaattgggc
taggttatggggtacctctttttgcctaaacttttgaaatctgaaacctg
ttttcatgtggaaataactatacaacatcttgttaatgattccatgtaat
aaaatttaagattcctttcgccacaatagccttttttccaaaggtactaa
actttgttacttctcaagagacctggcgccattttgtcttccttcatggc
ttcgtttgaaaatttacagacccgaataaaaaatatatacaaaacagttt
ttaatattttagatttagattttatttatgtttttaattgttatttccgt
gaagctgtaattcgatgataatagctttgaaatcgcctttgggccatatg
atctctaatcttgtcatatcttaacaatcctttgttatcgaatctattgt
ttaatttatatcatgtttagatgtttcaaacaattaattcctttcaaaat
tttttaatatggcagcttatgatagatacaaaaagtcttttgaaatagct
ctattataatgaagctctatttcttactcctcgtgcattaacacgtggta
atttatatctttgtttatcTTTGTAATCATACATaatcaatctaagtatc
aatcagattcgtgctccctggtcagtaaaatgtggttctatgcattcatt
ttcggtatttctattctggtctgtaaaatatttaggtaccccacaaccta
gcccaattggctaccccaattggctaccctgctttttagaccaacccgaa
tttccaaaaaattcaaaaaattatttccccGGCTCGAAAAAATTTCTGGA
ATGGTCCATTGTTTGATTGGATCGATAAAATCGATATTATATGGGATCAA
TATAATTCTACGATCAATAATTTGATTGGATCAATGTAAGATTGATCAGT
AAGCGATAAATGATCCTGACCGAAAAAATCTTAAGTATTGATCCCCCTTC
GATCTTTTATCGGAATAGATGAGTAATTTATCAATCTTTTATCGATTCTT
CATCGATCTGTTCCAATTATCGACCCTATTGAGCCTgagccccgtcagca
ccttggactgactaccaaTTCTCCTCAAATAgcatgggttgacccaggca
aaggttcattcacttgccaataACTGCTGCAAGTGGGAATCAAACCTCAG
TTGTCTGTGCAACAAgaaaggtcaatgaccactaatACCACAGCGTAcaa
gtgttttttatttttttctatttctatttggttgagttgcaggaggcttt
gaggcctatttttgcAACTATAGACGTTTTTAATGAGCGCCCTGTCAGCA
CCTtagactgactacccaattcccctcgcATGGCATAGGTTGGCTCGGGC
GAATGTTCGtttacttgccaagtgaaccgctgcgagtgggaatcaaacct
cagtcgcctgtgcagcaacctagctcaatgaccactataccaccaACGTT
TACAGGGATCGCACCACacagatttttaaaagaaatacgcaGATGGGTTC
CTGTCTACTCTGGGGCTAAATAACActtcttaaatatttttctttactgt
tggtttttaatttctctaaacctttatgtttctgtatgttttcatgcaaa
gtgtgatctgatccttaggcgaaccctaaaaatatttttgtttccggtcc
accgggtgacgaaaaatacactcacccggccggccgcaaaaaattttttt
ttgctaaatttcgatcccaaaactcgattttttaaagcactcgtaGAAGT
TAAAATGATGGTCTTCTTTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGGCGtgcgattat
tcaaatacttaattttcatcgtttatattttcaactgtgttacaatatct
ctaagaactggacactctctttcattttgaatatttatcgtcaattgcta
aaggctccaaactgtgattacgaagtgaacttttttgagaaaaaagtaga
gtgagagaaacatttccccaattttttaaatcctcactttatgaatgttt
ctttttattttactcacaagtcagcatgattccttttataaaaacaaagc
tgtttacttactgaaaagtccccactttgtaaatgtttctatttatttta
ctcacaaatcagcatgattcttttataaaaaccaagttgtataaaaaaaa
aaaacattcttaaaggttgagttgcaagcaagaattaacaaaaacaatgc
agggtttatttgagatgaataaaatttcatttctataacaatgatcggcg
tgcattttacagtagaatataaaatatcacgtgcgataaatcacacgcct
caaaaactgatttacgaaagttttccaaacaaacaaactaaccctaaccc
taacgatgatgtacgaaaaaaaaatgcggccgggtgacgacgaaataaat
tttcacccggccggtggaccggaaacaaaagattttttcgggttcgcctt
aaaatgcaaaaatgaagacattctattgcgttctctaaaagtgcacacac
atgtaaatagagctttgtgaatgccataaaatttttcccctatactggga
cctaaaatttcaTCAGActggggggaccttgttctcaggggggacctaaa
tttggcaggagggacctagaaccccagtcggagccatggTTTACCTTGTT
AAATTTGTTAAATTCAATGAAAGCTCTTAGTACCTGTCAAGCATGAGTTA
CATTGAATAAGTCAGCTTGATAAAAACTATTTGTTGTGTTTGcacttcaa
aaaatattcttgaaTCATTGAATATGCGAGCAGTCAGAAAGCAAGCAAAA
GAAAGCAAAAGATTTTAAGTAAAAAGAAGACTTTGTTGGATTGGAGAACA
GAAACTAATAAATAGAAACTAGCCCCTGTATAAGgtaaattgtttatttt
gttcaatttgccaaatttttctcAATCAATCACCACCAtatccattgttt
tattttgtcccatcaaaaaagtgtgatggatttgttaaaaaaaataatat
ccaATCAAATGAGAGTTAAGtgctttcatccaatcagattgataagtaat
cgataaatGAATGTTTGACCAGATATGACTTTTTTCGGTCgccatttttt
attgtttagttTTGACTTGATCATTCACAACCAtgtccccgtgtattcca
gcctttatttacgttacttatggacgccagagaatatacCCTgatgttgg
ctgatgcgaggcaaaaaaaatcattttatattattttgtatGTACTACTT
CATGATTTAGTATGAATTAGGTTCCTAACccaagaatgctgtaagaatat
tttcccaaaaaagttaagattgCAGATGGCTTGTTTTTGGGGAAATTCAG
gtttcaaaaaaagaataagTCATTAGTCATAATACCCTACAAGATGTGTT
TGTAATAAAAATGAGAGTTTTACACTTTTGCTTTATATTCTTAGTTAGTA
ATGAAAGCAATGCAATATATATTCACAGTAAGGAGAATAAACTCGTGCCA
AAAGCAAAACTTTTCtaatattaaaacaaaaaattgaatctGGGACTTGA
AATGAATCAGAATCCCCTCCCTATAAATTGAGGATACTTCAAGATTTGGA
AATCttctaatttaaattttttgattacCTTGCTGATGAAAAGACCTTTC
TTTGAACTTAGCCTTGGATTTGGCCTGTTATTTGGAAATGTTTAttgatt
tgatctttgaaattttgattagtCAACATGAcattagcaaaaggtctatt
gtacATTGACCTCTTCTTAAAAACCTTACTGATTACTGTAGCAAAAAGGC
TAAATAAAATCTTATAAGTGAATTATTATTTGTTCTTATCTGTTCATGTT
TGATTATACTTTTCATTTTAACACAGTGATATATGATAAATAAAGATTAA
CAAAGTATATTTTGAGGGTGCATTTACAGggaattttgtatttttgtaga
atGCAATCAACAGAAACCCAAACAACATAGAATTTATAGATAATATAATA
TTTGAAGATATCAAACCAACGATCCTTTATCAATCCTCTAGAAACTTGTT
TCAAAATTCACAGGTTGGGTTTTGCCAATCCTTAAGGGAGTGTTTATTGA
AAGGGTTGTTTTTAACGTTCAAAAGGTAATTCATTAAATGATCACCTTTT
ATTAAGTAGAGATTATCAAAGGGGGAGGCATCTAATTGAATTATTACTAC
TATATTTAGTCAAAGTAGgcaacacccctccaaccccaCCTAAAAAAAGT
GAGGATGGGTGTAGGTGGGGGTGCTACATAggtttacccccccccccccc
ccNGTATCCATTTGAAGTATTACTACTATATATAGTCATAGTAGgcaaca
cccctccaaccccgGCTAAAAAAGTGAGGATGGGTGTAGGTGGGGGTGCT
ACATAGGTTTACCCCCCCCCTGAAATTTCTCAtcaacccaacccccacct
ttttttttaaatccaaaaATCCTCAACGGGTTATAACGGAATTATTTTAT
TTCTACTTTAGAAAATCTGTTGAAAAACATGGAGACAGAGGGTGCATGGG
AACACGAGAGCTTTTGGCCGAAGATGATGAAGTCCAACCCAATGGAcgta
ttttcaaaaagatgatCCTTGGTGACTACAAGTGGATGAGTTACAATGAA
GCATATACAGAAGTTCAACGGGTCAGTGCTGGTCTTAAAGCTATTGGTGT
ACAAACGAAAGAATATGTTATCATCTTTGCCGAAACTAAAGCTGAATGGA
TGTTGAGTGCTCAAGCATGTTTTATGAGAAATTTCCCAGGTATTTTGGAT
AAGTTATTGCTTTAGTTTACCCAAAGTTATACTCTTAAAGTGTATAGGGA
CAAGAACAACCGCTGTGAgtgtttctcaaaaaaaaagtctCATATAGCCA
CTGTTCATGTAGAATAAAAGTGGGAAAGATTGCATCCAAAAGACTGTTAA
CATCGATTTTTTATAAATCATTACCGTATACACAACTGCTATTTACGTAA
CTTTGCAGATTATTGTGTCAGTCATTAAATTTTTGTCCTCTTGAGTTTAA
GTAAAAGATTATGAGCAGCATTTGCCAATTCTCATCAAAATCAAAGTAGA
TTGATTTGGAAAAAAGCTTTTCTGTGATTGTGTAGCAACCATAGCGTTAT
GATGAAACTTTGTACAATCAAATGTTGCTTTACCTTCTTCTCTAGTTGTC
ACAATTTATGCCACTCTTGGCGACGATGCTTTGGTCTACGGATTCAACGA
AGCAGAAGCCAAGTATGTCATGGTGGATGCAGCCCTTCTACccaaactga
aaaatttaatttcccaACTAACACACGTTGAACAAATTGTCTATTTTGGA
AATGCCAAGAAAGCGCTTGTACAAGAATTCCCTGAAAACATCAAAGTCTA
TTCTTATCAACAAATCAAAGATATCGGATCCAAACTAAAGAATTGTAAGT
GTTTTCTTCGCTATCATTATTCAGAACTAGTCACATTCTCTAACCCaaag
atttgtttttcaaagtcggaaagatttcattaaaattttttaaaagaaca
agttgtaacaaatggATCATTTCTTTTGGAACACAAAATCTCTGAAATGT
TAGCAAATCCATATATATAACGTTGNTTGGTGTACAAACCAAAGAATATG
TTATCATCTTTGCCGAAACTAAAGCTGAATGGATGTTGAGTGCTCAAGCA
TGTTTCATGAGAAATTTCCCAGGTATTTTGGATAAGTTATTGCTTTAGTT
TACCCAAAGTTATACTCTTAAAGTGTATAGGGACAAGAACAGCCGCTGTG
AgtgtttctcaaaaaaaaagtctCATATAGCCACTGTTCATGTAGAATAA
AAGTGGGAAAGATTGCATCCAAAAGACTGTTAACATCGATTTTTTATAAA
TCATTACCGTATACACAACTGCTATTTACGTAACTTTGCAGATTATTGTG
TCAGTCATTAAATTTTTGTCCTCTTGAGTTTAAGTAAAAGATTATGAGCA
GCATTTGCCAATTCTCATCAAAATCAAAGTAGATTGATTTGGAAAAAAGC
TTTTCTGTGATTGTGTAGCAACCATAGCGTTATGATGAAACTTTGTACAA
TCAAATGTTGCTTTACCTTCTTCTCTAGTTGTCACAATTTATGCCACTCT
TGGCGACGATGCTTTGGTCTACGGATTCAACGAAGCAGAAGCCAAGTATG
TCATGGTGGATGCAGCCCTTCTACccaaactgaaaaatttaatttcccaA
CTAACACACGTTGAACAAATTGTCTATTTTGGAAATGCCAAGAAAGCGCT
TGTACAAGAATTCCCTGAAAACATCAAAGTCTATTCTTATCAACAAATCA
AAGATATCGGATCCAAACTAAAGAATTGTAAGTGTTTTCTTCGCTATCAT
TATTCAGAACTAGTCACATTCTCTAACCCaaagatttgtttttcaaagtc
ggaaagatttcattaaaattttttaaaagaacaagttgtaacaaatggAT
CATTTCTTTTGGAACACAAAATCTCTGAAATGTTAGCAAATCCATATATA
TAACGTTGTAAGGAAGCTATTACGGAGTGAGTTTAAGTCTGGCCATGTCT
AATTGAAAAGTGAGGTCTAGAACACTGGCATCACTCGATAAAGTTCTTTC
CAAGAACAAAAGCAAGCCCCCTTTTAGTTTCATTAACAAATAACAACATC
GTCATATCTCTCTTTTGAGATGATTCTctaaacttttatttattttttga
atatagTTGATTCACCGGTAGAATCACCGGATCAAGATGACGTAGCTGTG
GTGATGTACACATCAGGATCCACTGGTGTTCCCAAAGGTACcatatattt
tcttttcttgtgtTGTGTGTAATGCTCACGTTTGGTTTTAACTGTGGATG
GActtactttttttaggtttttattttctgactttaATTTGAACTCTGAA
TTTATTGCAGCTTTTTAGGtgatatttttacaattttgaagtaaaaaatt
ccAATACCTTTTTTAGGTGTCATCATTTCTCATTTGAATGTCACATCTTG
TTTACATGCACTCGTTTCCAGTGTCCCAAACATGGGGTAAGtaaactgtt
tttattttatttttctttcaaaatttattttgcttGTCCTGTATAGTATC
CTTTTCTCGTCGGCCAACTCCTTAAGCCCTTTTTTTTCTTCCCTGTTAAA
TTTTCAACCAAATCTCAAACGACAGATCTTTTCTTGTGTTACAATAGTAC
CGCTCTCGGTGTAAAATGTCTCATTAGTTGGTCTCATTCCACTGATGTCT
ACTTAATTAAATGCATTAGACTTTTCTTAGACGTCCCCTGATCAGAAATG
TTGTTTCAAATTCTAAACCAGGTAAACAGGGCTaagaaaatcgaatgttt
tacGTTGtaaaaaaaccatttaaaatcGAACGCTTTAGTCTTCAAAAAAG
TATATTTTCTAATAGTATTTTTTTCTAAGATAACGTGTTTCATTCATAGA
CCAAACGATCGTTATATCGGTTACCTTCCACTGGCACATATCATGGAGTT
AGCTTGTGGTAAGTCTTCCATAAAAACACTAATAGTCCATgcagaaaaca
aaacaaaaatataaaaagctgGAGCCAAAGTTCTTAAAACCGCCCGTGTC
TCGAGACGTACCCCACCTTTTGCCTCCTACCCTACCTTTTGCCTCCTACC
CCATCTTAAGCAACAAACACCTGTAAACCCCACCATTTCGACTTTTTTGA
AAGATCTTTAACCACCCCCATAGGGTTGGGGTTAAGTATTATATACTAGA
TCTTGCCCCCAATATACAATATGAGGAATGGTGATAAGGCAAGCATTTGA
TAGCTTGAGATTATTTGGTCATCGATACGATAAATTAAATGCGTTGCGCT
TTTCCCGTGTCTAACTATATTGACGATTTTATATGAATCACCTCATTCGT
TTTAGAATGTGGATGTCTAGCACTGGCTACACCGATTGGATATTCAAGTG
CACTGACCCTATCTGATCAAGTAtgtcttttttatttaaaactattttca
cCTTTGCTATCAAATCTTTTTGAAGCTATTAATTGAAGAATTGAAGCTAT
TATATTGCAACAAATGTCACCCTTGGACAAAATAGACACATGGACGCCTC
ACTATTTTATAACTTTACTAAACGATGACCCATAATAATTTActgagaaa
ttcaaagaaaactAAGTTCGCATTTGATTTAAAagtttggcccaaatttt
aatTGTGCTTCATTTTTTATGCAATCTCAAGTCATGAACCATTCACTTTT
ATTCTAGTCTTCCAAGATCAAGAAAGGAACCAAAGGAGATGCGAGTGTTC
TTAGACCAACTTTGATGGCCGCTGTTCCGGTTAGTGTAATATAAGCTCAA
TATGCATCTTCACAAATAATTATAAATTGTTAAAATTATTAAGCgctttt
agtacatgtgtaatCTCATGATAGTGTGACCTCTTGATATGAAAATGTAC
ATAAAATAGTCGTTCGTCATTCCATAGTTATTGTACCAAGGTTGTTAAAG
TACCAAGAATCTATTGACATAcccatttttaaaagttttcttcgTCGTAA
CTTCTCATTGTAGACTGCGATCCTCTGTCACTTTTTAAATAAACCAAGTC
TCCAGTCTAACAAGAATGAATAAAGCCTTCTAGACGTTGACGTTGAAATA
AGGATCATCTTCCTTTTCTAATCTTCATTCCTTCTTCATCTTTCTAGATG
ATCATGGATCGTATGAGAAAAGCTGTTCTAGATAAAGTGGCCGGTGGCTC
ACCTTTCGCACAAGCGCTCTTCAATTTCGCTTTCAACTATAAATTAAGGC
TCATCAGAAAAGGCTACGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016956XLOC_016956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029669-exon-sc0000763-1491911889:120757..121630TCONS_00029669-exon-sc0000763-1491911889:120757..121630Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:120757..121630TCONS_00029669-exon-sc0000763-1510915933:120757..121630Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:120757..121630TCONS_00029669-exon-sc0000763-1575043694:120757..121630Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:130118..130395TCONS_00029669-exon-sc0000763-1491911889:130118..130395Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:130118..130395TCONS_00029669-exon-sc0000763-1510915933:130118..130395Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:130118..130395TCONS_00029669-exon-sc0000763-1575043694:130118..130395Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:131735..131983TCONS_00029669-exon-sc0000763-1491911889:131735..131983Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:131735..131983TCONS_00029669-exon-sc0000763-1510915933:131735..131983Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:131735..131983TCONS_00029669-exon-sc0000763-1575043694:131735..131983Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:132363..132443TCONS_00029669-exon-sc0000763-1491911889:132363..132443Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:132363..132443TCONS_00029669-exon-sc0000763-1510915933:132363..132443Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:132363..132443TCONS_00029669-exon-sc0000763-1575043694:132363..132443Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:132623..132692TCONS_00029669-exon-sc0000763-1491911889:132623..132692Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:132623..132692TCONS_00029669-exon-sc0000763-1510915933:132623..132692Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:132623..132692TCONS_00029669-exon-sc0000763-1575043694:132623..132692Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:133106..133164TCONS_00029669-exon-sc0000763-1491911889:133106..133164Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:133106..133164TCONS_00029669-exon-sc0000763-1510915933:133106..133164Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:133106..133164TCONS_00029669-exon-sc0000763-1575043694:133106..133164Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:133562..133626TCONS_00029669-exon-sc0000763-1491911889:133562..133626Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:133562..133626TCONS_00029669-exon-sc0000763-1510915933:133562..133626Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:133562..133626TCONS_00029669-exon-sc0000763-1575043694:133562..133626Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:133914..133985TCONS_00029669-exon-sc0000763-1491911889:133914..133985Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:133914..133985TCONS_00029669-exon-sc0000763-1510915933:133914..133985Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:133914..133985TCONS_00029669-exon-sc0000763-1575043694:133914..133985Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1491911889:134354..134475TCONS_00029669-exon-sc0000763-1491911889:134354..134475Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1510915933:134354..134475TCONS_00029669-exon-sc0000763-1510915933:134354..134475Clytia hemisphaericaexon
TCONS_00029669-exon-sc0000763-1575043694:134354..134475TCONS_00029669-exon-sc0000763-1575043694:134354..134475Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000763supercontigsc0000763:120757..134475 +
Expression
No biomaterial libraries express this feature.
Blast
[Close]
BLAST of TCONS_00029669 vs. Swiss-Prot (Human)
Match: ACSL4 (Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapiens GN=ACSL4 PE=1 SV=2)

HSP 1 Score: 373.629 bits (958), Expect = 4.654e-119
Identity = 185/397 (46.60%), Postives = 262/397 (65.99%), Query Frame = 3 
Query:  690 FWNTVTFIPWYVLSGNFKRPKYG-HIQGKSITGRPEGPYADINHL-SGSKDGFDGITTLDQLFKKSVEKHGDRGCMGTRELLAEDDEVQPNGRIFKKMILGDYKWMSYNEAYTEVQRVSAGLKAIGVQTKEYVIIFAETKAEWMLSAQACFMRNFPVVTIYATLGDDALVYGFNEAEAKYVMVDAALLP-KLKNLISQLTHVEQIVYFGNAKKALVQ-EFPENIKVYSYQQIKDIGSKLKNFDSPVESPDQDDVAVVMYTSGSTGVPKGVIISHLNVTSCLHALVSSVPNMGPNDRYIGYLPLAHIMELACECGCLALATPIGYSSALTLSDQSSKIKKGTKGDASVLRPTLMAAVPMIMDRMRKAVLDKVAGGSPFAQALFNFAFNYKLRLIRKGY 1868
             ++ + FIPWY L+   K+      I+ K  + +P  PY  + H  S +     G  TLD+LF  +V K G +  +GTRE+L+E++E+QPNG++FKK+ILG+YKWM+Y E    V    +GL A+G++ K  + IF ET+AEWM++AQ CF  NFP+VT+YATLG +A+V+G NE+EA Y++    LL  KLK  +  ++ V+ I+Y  N  KA+ + E+PE  +++S Q ++++GS  +N   P   P   D+A+VMYTSGSTG PKGV++ H N+ + +      +P +GP D YIGYLPLAH++EL  E  C      IGYSS LTLSDQSSKIKKG+KGD +VL+PTLMAAVP IMDR+ K V+ KV   +   + LF   ++YKL  I+KGY
Sbjct:   21 IYSALIFIPWYFLTNAKKKNAMAKRIKAKPTSDKPGSPYRSVTHFDSLAVIDIPGADTLDKLFDHAVSKFGKKDSLGTREILSEENEMQPNGKVFKKLILGNYKWMNYLEVNRRVNNFGSGLTALGLKPKNTIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKTALLDISCVKHIIYVDN--KAINKAEYPEGFEIHSMQSVEELGSNPENLGIPPSRPTPSDMAIVMYTSGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGCRIGYSSPLTLSDQSSKIKKGSKGDCTVLKPTLMAAVPEIMDRIYKNVMSKVQEMNYIQKTLFKIGYDYKLEQIKKGY 415
The following BLAST results are available for this feature:
BLAST of TCONS_00029669 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACSL44.654e-11946.60Long-chain-fatty-acid--CoA ligase 4 OS=Homo sapien... [more]
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