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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029664 ID=TCONS_00029664|Name=TCONS_00029664|organism=Clytia hemisphaerica|type=transcript|length=6521bpRun BLAST on NCBI transcript from alignment at sc0000763:69300..95234+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029664 ID=TCONS_00029664|Name=TCONS_00029664|organism=Clytia hemisphaerica|type=transcript|length=25935bp|location=Sequence derived from alignment at sc0000763:69300..95234+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029664 vs. Swiss-Prot (Human)
Match: TMTC4 (Transmembrane and TPR repeat-containing protein 4 OS=Homo sapiens GN=TMTC4 PE=2 SV=2) HSP 1 Score: 327.405 bits (838), Expect = 1.534e-150 Identity = 199/434 (45.85%), Postives = 281/434 (64.75%), Query Frame = 3
Query: 159 LDDYVPVPRLSINQASIIVILTSCLCFWKCQYAEFTFDDNSAILSNKDVSAETPLWSILENDFWGTKMSSKLSHKSYRPLTVLTYRVNYILSGGYHPWSFXXXXXXXXXXXXXXXXXXFSLFFGGVSDNDIGD--FKAPRRSLLATLLFTVHPVHTESVAAVVGRADLICSIFFNFSLLFYIKHSYEDQQAGWKGRKITFIVSMLCAIIAMFSKEQGITVLGVCLAYDVIMVLRLN-LDVLKK-----KCFESVIDLPS--IIKRMVIVCIIAFGLLVIRLNIMGNVPPSFQKMDNPASFHPSLIFRVFNYIYLYSINVWLLLAPYWLCFDWAMGCIPVITSYDDXXXXXXXXXXXXXXXXXMKIIFNLDRPSGRLLMMSFCLLVIPFLPAMNIFFRVGFVIAERNLYIPSIGFSMLIVHGVNAICKSSAGRKV 1430
LD +P L A ++V + +CF + +F FDD+ AI++NKD+ AETPL + +DFWG+++SS SHKSYRPLTVLT+R+NY LSGG+HP FHVVN++LHS VL++ VFS+ FGG+ G APR SLLA LLF VHPVHTE VA VVGRADL+C++FF S L Y K E + G ++S+ +AM KEQGITVLG+ +D++++ + N L++++K K E++ L + ++ RM ++ G+L +R IMG PP+F ++DNPASF S++ R NY Y YS+N WLLL P+WLCFDW+MGCIP+I S D R++ L + L+ + + + D R+L + LVIPFLPA N+FFRVGFV+AER LY+PS+G+ +L+ G A+ K + +K+
Sbjct: 8 LDHILPSSVLPPFWAKLVVGSVAIVCFARSYDGDFVFDDSEAIVNNKDLQAETPLGDLWHHDFWGSRLSSNTSHKSYRPLTVLTFRINYYLSGGFHPVGFHVVNILLHSGISVLMVDVFSVLFGGLQYTSKGRRLHLAPRASLLAALLFAVHPVHTECVAGVVGRADLLCALFFLLSFLGYCKAFRESNKEGAHSSTFWVLLSIFLGAVAMLCKEQGITVLGLNAVFDILVIGKFNVLEIVQKVLHKDKSLENLGMLRNGGLLFRMTLLTSGGAGMLYVRWRIMGTGPPAFTEVDNPASFADSMLVRAVNYNYYYSLNAWLLLCPWWLCFDWSMGCIPLIKSISDWRVIALAALWFCLIGLICQALCSEDGHKRRILTLGLGFLVIPFLPASNLFFRVGFVVAERVLYLPSVGYCVLLTFGFGALSKHTKKKKL 441 HSP 2 Score: 227.639 bits (579), Expect = 1.534e-150 Identity = 126/299 (42.14%), Postives = 172/299 (57.53%), Query Frame = 1
Query: 1450 IGIACVMVIFIS--RTINRTNNWLTEESLFKSGEEVCPLNAKVHYNIGKVSQDKNELDNAIRYYKNAIRLSPEYDQPMNNLGNILKDMKQYKEAEFYLQNAVNVTPKFATGWMNLGIVKAEMNKNDEANECYSKAVLHRRNYPDAYYNWGNMFLALKKHQEALEKFEKAISLKHDHLQAWQNKINLLCEMKANEDLLKGIQKMA-SIFPTNDQLMYLAGNSLGRVGNFKESKNYLLRTIKLNQRNYEAHGALGAVYHHTKDYKEAEKHYKISLSINPNHQGTIANYKKLQK---TMQKK 2328
I + ++FI+ R + R+ W +EE LF+S VCPLNAKVHYNIGK DK AIRYY+ A+RL+P+Y MNNLGNILK+ + +EAE L AV + P FA WMNLGIV+ + + + A + Y A+ HRR YPD YYN G ++ L +H +AL + A LK +H AW N I LL + N + + + A + P + LM+ N LG+ +KES+ L+ IK N HG L +YH A+KHY+ISL ++P GT NY L++ MQKK
Sbjct: 442 IAAVVLGILFINTLRCVLRSGEWRSEEQLFRSALSVCPLNAKVHYNIGKNLADKGNQTAAIRYYREAVRLNPKYVHAMNNLGNILKERNELQEAEELLSLAVQIQPDFAAAWMNLGIVQNSLKRFEAAEQSYRTAIKHRRKYPDCYYNLGRLYADLNRHVDALNAWRNATVLKPEHSLAWNNMIILL-DNTGNLAQAEAVGREALELIPNDHSLMFSLANVLGKSQKYKESEALFLKAIKANPNAASYHGNLAVLYHRWGHLDLAKKHYEISLQLDPTASGTKENYGLLRRKLELMQKK 739 The following BLAST results are available for this feature:
BLAST of TCONS_00029664 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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