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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029657 ID=TCONS_00029657|Name=TCONS_00029657|organism=Clytia hemisphaerica|type=transcript|length=1815bp
AAAAGACACTTTAAGCTCACAAGATACCTCAATGCCTTTCTTTATCTTAT
TGAAGGACGAAACTTAGCATGGTTGCAGTTAATTTTAACTACAAAGAGTG
GCTCAAAAAgcgaaaaacaacaacaaaagtttttattgTCATTCAATTTG
CGCTAGGTATCGAATATTCGATGACTTTTACAACATTGTACTTGTACTTA
AAGGACGTTTTACATGTCACAAACAACCTCAATGCTTTCTATAGCAGTAT
TTGTGGAATATATGTTTCAACACAGATTGTTGCATCGTTGGTTTTGTGCC
GTTTGTTTGATAAATATCGAACATTGAAACTTTTCTTTATTCTCGTTATA
TTTATAACGTTTGTTGGGAATGTTTTGTACACAATCCCATACTCGCCGTA
TCTCTTGTTAGCCGGACGTTTCCTTTCCGGAGCTGGAGGCTCCCTGAGAC
CGATTATATTATCTGAATTGACCAGGATTTATCCTAGTGATGAAGTTATG
GCACAACTGCCGGCAATGACTGTTAGTTATGGTATTGGTACCACAGTTGG
TCCTGTGATTAATTTTGCTTTTGTGAAAGCACGATTTACAATACTTGGTA
TACCGATCAACTATGCTAATGGAGCTGGATTAGCGTTATCAATCGTATTT
CTAGCAGCGTTTGCTATGTCTCTCTTTTTTGTAAGTGAtctatcaaaaga
atttgactTAAAGGAGGAAATACAAAAGATGGATGCTGACAAACTATCAT
TAGATAGTTTATGTGGTgcaaatgaagaaaatccatcCGCAACACTTTCT
GAAAGAAAGGCTCTCGATAACAAACCTCTGTTGGATGAAGACCCTTCCGA
AAATAGAACGGAAGTGAACCAATTAGGAATAATGGAGATCATTATGAAGC
TGTTTTCTTCAATCGACATCGTTCTGATTTTtgttttcgcgtttttcgct
TACATCACAATACTATTGCAAGATCTATGGATATCTATGGCAGTCATCAA
GTTATTAAATTGGACAGTTCTGGAAATCAATCTCATTTTCCTGTTCAACG
GCATCATTATCAGTTCAACTTGTTTGGTATTGGTATTCAAACCACCATCA
AAGAATCAGTTGGTCAATATTGGGATTGCCAGTTTTATAGCAACATGCTA
CacgtttggaatttttttatatttccgtTTGGTTAACAGCATAGAATGGT
TTAATGTGGCATTATGGGTTATATATCCTTTTATGATGTCTACTATTGTC
TTCGTTGATGAGTTACTCACGATGAGTGTTTTGGCCCAAATGGTTCCATC
CAAGATTCAAGCATTTTCTGAAAGTATTCGTTTGATGTTCTCAAGATTAG
GAGCAACCTTTGCTTTGTTCACTGCAGCTTTTGcctttgaatatatttta
tatGTTTGTCCATCATGTATGGTCATTTCTTTGGTATTGATGTTGTTCTT
GATTTGGAGaaagaaacattttcaaaatccaaaattgaTTATCTcgtaaa
aacaaaacacacatCACCGTCAGATATTTAACAGAAAAACATAATTGTTG
AAAATTCAGTACTGAATTAGAACATCATATCCACATATACAACATATTGA
TAAAAGACATGTTTCCAAATTCATTTGGCACCAAATGTTTGAGTGATGTG
CGAAGAGCGGcgtttgaaaatatagtatttATTATATAGGTTTGGCTTTT
CACAGGGGTTTTTTAGTTTTACATCGTCATGGTCTGTTCAGGTTTTTTGC
AGGTCTTTTGTTTGGTCTACATTTTTTGGGGTTTTTTCATTTATTGTCTG
TTTGCTCTATTATTT Run BLAST on NCBI protein sequence of TCONS_00029657-protein >TCONS_00029657-protein ID=TCONS_00029657-protein|Name=TCONS_00029657-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MVAVNFNYKEWLKKRKTTTKVFIVIQFALGIEYSMTFTTLYLYLKDVLHV
TNNLNAFYSSICGIYVSTQIVASLVLCRLFDKYRTLKLFFILVIFITFVG
NVLYTIPYSPYLLLAGRFLSGAGGSLRPIILSELTRIYPSDEVMAQLPAM
TVSYGIGTTVGPVINFAFVKARFTILGIPINYANGAGLALSIVFLAAFAM
SLFFVSDLSKEFDLKEEIQKMDADKLSLDSLCGANEENPSATLSERKALD
NKPLLDEDPSENRTEVNQLGIMEIIMKLFSSIDIVLIFVFAFFAYITILL
QDLWISMAVIKLLNWTVLEINLIFLFNGIIISSTCLVLVFKPPSKNQLVN
IGIASFIATCYTFGIFLYFRLVNSIEWFNVALWVIYPFMMSTIVFVDELL
TMSVLAQMVPSKIQAFSESIRLMFSRLGATFALFTAAFAFEYILYVCPSC
MVISLVLMLFLIWRKKHFQNPKLIIS Run BLAST on NCBI transcript from alignment at sc0000762:48021..49835 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029657 ID=TCONS_00029657|Name=TCONS_00029657|organism=Clytia hemisphaerica|type=transcript|length=1815bp|location=Sequence derived from alignment at sc0000762:48021..49835 (Clytia hemisphaerica)
AAATAATAGAGCAAACAGACAATAAATGAAAAAACCCCAAAAAATGTAGA
CCAAACAAAAGACCTGCAAAAAACCTGAACAGACCATGACGATGTAAAAC
TAAAAAACCCCTGTGAAAAGCCAAACCTATATAATaaatactatattttc
aaacgCCGCTCTTCGCACATCACTCAAACATTTGGTGCCAAATGAATTTG
GAAACATGTCTTTTATCAATATGTTGTATATGTGGATATGATGTTCTAAT
TCAGTACTGAATTTTCAACAATTATGTTTTTCTGTTAAATATCTGACGGT
GatgtgtgttttgtttttacgAGATAAtcaattttggattttgaaaatgt
ttctttCTCCAAATCAAGAACAACATCAATACCAAAGAAATGACCATACA
TGATGGACAAACatataaaatatattcaaaggCAAAAGCTGCAGTGAACA
AAGCAAAGGTTGCTCCTAATCTTGAGAACATCAAACGAATACTTTCAGAA
AATGCTTGAATCTTGGATGGAACCATTTGGGCCAAAACACTCATCGTGAG
TAACTCATCAACGAAGACAATAGTAGACATCATAAAAGGATATATAACCC
ATAATGCCACATTAAACCATTCTATGCTGTTAACCAAacggaaatataaa
aaaattccaaacgtGTAGCATGTTGCTATAAAACTGGCAATCCCAATATT
GACCAACTGATTCTTTGATGGTGGTTTGAATACCAATACCAAACAAGTTG
AACTGATAATGATGCCGTTGAACAGGAAAATGAGATTGATTTCCAGAACT
GTCCAATTTAATAACTTGATGACTGCCATAGATATCCATAGATCTTGCAA
TAGTATTGTGATGTAagcgaaaaacgcgaaaacaAAAATCAGAACGATGT
CGATTGAAGAAAACAGCTTCATAATGATCTCCATTATTCCTAATTGGTTC
ACTTCCGTTCTATTTTCGGAAGGGTCTTCATCCAACAGAGGTTTGTTATC
GAGAGCCTTTCTTTCAGAAAGTGTTGCGgatggattttcttcatttgcAC
CACATAAACTATCTAATGATAGTTTGTCAGCATCCATCTTTTGTATTTCC
TCCTTTAagtcaaattcttttgatagaTCACTTACAAAAAAGAGAGACAT
AGCAAACGCTGCTAGAAATACGATTGATAACGCTAATCCAGCTCCATTAG
CATAGTTGATCGGTATACCAAGTATTGTAAATCGTGCTTTCACAAAAGCA
AAATTAATCACAGGACCAACTGTGGTACCAATACCATAACTAACAGTCAT
TGCCGGCAGTTGTGCCATAACTTCATCACTAGGATAAATCCTGGTCAATT
CAGATAATATAATCGGTCTCAGGGAGCCTCCAGCTCCGGAAAGGAAACGT
CCGGCTAACAAGAGATACGGCGAGTATGGGATTGTGTACAAAACATTCCC
AACAAACGTTATAAATATAACGAGAATAAAGAAAAGTTTCAATGTTCGAT
ATTTATCAAACAAACGGCACAAAACCAACGATGCAACAATCTGTGTTGAA
ACATATATTCCACAAATACTGCTATAGAAAGCATTGAGGTTGTTTGTGAC
ATGTAAAACGTCCTTTAAGTACAAGTACAATGTTGTAAAAGTCATCGAAT
ATTCGATACCTAGCGCAAATTGAATGAcaataaaaacttttgttgttgtt
tttcgcTTTTTGAGCCACTCTTTGTAGTTAAAATTAACTGCAACCATGCT
AAGTTTCGTCCTTCAATAAGATAAAGAAAGGCATTGAGGTATCTTGTGAG
CTTAAAGTGTCTTTT Coding sequence (CDS) from alignment at sc0000762:48021..49835 >TCONS_00029657 ID=TCONS_00029657|Name=TCONS_00029657|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at sc0000762:48021..49835 (Clytia hemisphaerica)
ttacgAGATAAtcaattttggattttgaaaatgtttctttCTCCAAATCA
AGAACAACATCAATACCAAAGAAATGACCATACATGATGGACAAACatat
aaaatatattcaaaggCAAAAGCTGCAGTGAACAAAGCAAAGGTTGCTCC
TAATCTTGAGAACATCAAACGAATACTTTCAGAAAATGCTTGAATCTTGG
ATGGAACCATTTGGGCCAAAACACTCATCGTGAGTAACTCATCAACGAAG
ACAATAGTAGACATCATAAAAGGATATATAACCCATAATGCCACATTAAA
CCATTCTATGCTGTTAACCAAacggaaatataaaaaaattccaaacgtGT
AGCATGTTGCTATAAAACTGGCAATCCCAATATTGACCAACTGATTCTTT
GATGGTGGTTTGAATACCAATACCAAACAAGTTGAACTGATAATGATGCC
GTTGAACAGGAAAATGAGATTGATTTCCAGAACTGTCCAATTTAATAACT
TGATGACTGCCATAGATATCCATAGATCTTGCAATAGTATTGTGATGTAa
gcgaaaaacgcgaaaacaAAAATCAGAACGATGTCGATTGAAGAAAACAG
CTTCATAATGATCTCCATTATTCCTAATTGGTTCACTTCCGTTCTATTTT
CGGAAGGGTCTTCATCCAACAGAGGTTTGTTATCGAGAGCCTTTCTTTCA
GAAAGTGTTGCGgatggattttcttcatttgcACCACATAAACTATCTAA
TGATAGTTTGTCAGCATCCATCTTTTGTATTTCCTCCTTTAagtcaaatt
cttttgatagaTCACTTACAAAAAAGAGAGACATAGCAAACGCTGCTAGA
AATACGATTGATAACGCTAATCCAGCTCCATTAGCATAGTTGATCGGTAT
ACCAAGTATTGTAAATCGTGCTTTCACAAAAGCAAAATTAATCACAGGAC
CAACTGTGGTACCAATACCATAACTAACAGTCATTGCCGGCAGTTGTGCC
ATAACTTCATCACTAGGATAAATCCTGGTCAATTCAGATAATATAATCGG
TCTCAGGGAGCCTCCAGCTCCGGAAAGGAAACGTCCGGCTAACAAGAGAT
ACGGCGAGTATGGGATTGTGTACAAAACATTCCCAACAAACGTTATAAAT
ATAACGAGAATAAAGAAAAGTTTCAATGTTCGATATTTATCAAACAAACG
GCACAAAACCAACGATGCAACAATCTGTGTTGAAACATATATTCCACAAA
TACTGCTATAGAAAGCATTGAGGTTGTTTGTGACATGTAAAACGTCCTTT
AAGTACAAGTACAATGTTGTAAAAGTCATCGAATATTCGATACCTAGCGC
AAATTGAATGAcaataaaaacttttgttgttgtttttcgcTTTTTGAGCC
ACTCTTTGTAGTTAAAATTAACTGCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029657-exon-sc0000762-1491911889:48021..49835 | TCONS_00029657-exon-sc0000762-1491911889:48021..49835 | Clytia hemisphaerica | exon |
| TCONS_00029657-exon-sc0000762-1510915933:48021..49835 | TCONS_00029657-exon-sc0000762-1510915933:48021..49835 | Clytia hemisphaerica | exon |
| TCONS_00029657-exon-sc0000762-1575043694:48021..49835 | TCONS_00029657-exon-sc0000762-1575043694:48021..49835 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000762 | supercontig | sc0000762:48021..49835 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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