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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029656 ID=TCONS_00029656|Name=TCONS_00029656|organism=Clytia hemisphaerica|type=transcript|length=1135bp
ATTAGGAATAATGGAGATCATTATGAAGCTGTTTTCTTCAATCGACATCG
TTCTGATTTTtgttttcgcgtttttcgctTACATCACAATACTATTGCAA
GATCTATGGATATCTATGGCAGTCATCAAGTTATTAAACTGGACAGTTCT
GGAAATCAATCTCATTTTCCTGTTCAACGGCATCATTATCAGTTCAACTT
GTTTGGTCTTGGTATTCAAACCACCATCAAAGAATCAGTTGGTCAATATT
GGGATTGCCAGTTTTATAGCAACATGCTACacgtttggaatttttttata
tttccgtTTGGTTAACAGCATAGAATGGTTTAATGTGGCATTATGGGTTA
TATATCCTTTTATGATGTCTACTATTGTCTTCGTTGATGAGTTACTCACG
ATGAGTGTTTTGGCCCAAATGGTTCCATCCAAGATTCAAGCATTTTCTGA
AAGTATTCGTTTGATGTTCTCAAGATTAGGAGCAACCTTTGCTTTGTTCA
CTGCAGCTTTTGcctttgaatatattttatatGTTTGTCCATCATGTATG
GTCATTTCTTTGGTATTGATGTTGTTCTTGATTTGGAGaaagaaacattt
tcaaaatccaaaattgaTTATCTcgtaaaaacaaaacacacatCACCGTC
AGATATTTAACAGAAAAACATAATTGTTGAAAATTCAGTACTGAATTAGA
ACATCATATCCACATATACAACATATTGATAAAAGACATGTTTCCAAATT
CATTTGGCACCAAATGTTTGAGTGATGTGCGAAGAGCGGcgtttgaaaat
atagtatttATTATATAGGTTTGGCTTTTCACAGGGGTTTTTTAGTTTTA
CATCGTCATGGTCTGTTCAGGTTTTTTGCAGGTCTTTTGTTTGGTCTACA
TTTTTTGGGGTTTTTTCATTTATTGTCTGTTTGCTCTATTATTTATTACA
CCACTCATGTAATCCGCATTtatttccaaatagtatttacATTAATTaag
ttatttttattatacTATCATTATCAGTAAGCTTTCACTTCATATTTTTC
ACTGAATCAGAGTTCGTAATTTTTTGTATCTTCTTAGTACATTTTCATAT
ATTTAGTACATTCATAATATTCAAAGACAAAAGTG Run BLAST on NCBI protein sequence of TCONS_00029656-protein >TCONS_00029656-protein ID=TCONS_00029656-protein|Name=TCONS_00029656-protein|organism=Clytia hemisphaerica|type=polypeptide|length=208bp
LGIMEIIMKLFSSIDIVLIFVFAFFAYITILLQDLWISMAVIKLLNWTVL
EINLIFLFNGIIISSTCLVLVFKPPSKNQLVNIGIASFIATCYTFGIFLY
FRLVNSIEWFNVALWVIYPFMMSTIVFVDELLTMSVLAQMVPSKIQAFSE
SIRLMFSRLGATFALFTAAFAFEYILYVCPSCMVISLVLMLFLIWRKKHF
QNPKLIIS Run BLAST on NCBI transcript from alignment at sc0000762:46770..47904 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029656 ID=TCONS_00029656|Name=TCONS_00029656|organism=Clytia hemisphaerica|type=transcript|length=1135bp|location=Sequence derived from alignment at sc0000762:46770..47904 (Clytia hemisphaerica)
CACTTTTGTCTTTGAATATTATGAATGTACTAAATATATGAAAATGTACT
AAGAAGATACAAAAAATTACGAACTCTGATTCAGTGAAAAATATGAAGTG
AAAGCTTACTGATAATGATAgtataataaaaataacttAATTAATgtaaa
tactatttggaaataAATGCGGATTACATGAGTGGTGTAATAAATAATAG
AGCAAACAGACAATAAATGAAAAAACCCCAAAAAATGTAGACCAAACAAA
AGACCTGCAAAAAACCTGAACAGACCATGACGATGTAAAACTAAAAAACC
CCTGTGAAAAGCCAAACCTATATAATaaatactatattttcaaacgCCGC
TCTTCGCACATCACTCAAACATTTGGTGCCAAATGAATTTGGAAACATGT
CTTTTATCAATATGTTGTATATGTGGATATGATGTTCTAATTCAGTACTG
AATTTTCAACAATTATGTTTTTCTGTTAAATATCTGACGGTGatgtgtgt
tttgtttttacgAGATAAtcaattttggattttgaaaatgtttctttCTC
CAAATCAAGAACAACATCAATACCAAAGAAATGACCATACATGATGGACA
AACatataaaatatattcaaaggCAAAAGCTGCAGTGAACAAAGCAAAGG
TTGCTCCTAATCTTGAGAACATCAAACGAATACTTTCAGAAAATGCTTGA
ATCTTGGATGGAACCATTTGGGCCAAAACACTCATCGTGAGTAACTCATC
AACGAAGACAATAGTAGACATCATAAAAGGATATATAACCCATAATGCCA
CATTAAACCATTCTATGCTGTTAACCAAacggaaatataaaaaaattcca
aacgtGTAGCATGTTGCTATAAAACTGGCAATCCCAATATTGACCAACTG
ATTCTTTGATGGTGGTTTGAATACCAAGACCAAACAAGTTGAACTGATAA
TGATGCCGTTGAACAGGAAAATGAGATTGATTTCCAGAACTGTCCAGTTT
AATAACTTGATGACTGCCATAGATATCCATAGATCTTGCAATAGTATTGT
GATGTAagcgaaaaacgcgaaaacaAAAATCAGAACGATGTCGATTGAAG
AAAACAGCTTCATAATGATCTCCATTATTCCTAAT Coding sequence (CDS) from alignment at sc0000762:46770..47904 >TCONS_00029656 ID=TCONS_00029656|Name=TCONS_00029656|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at sc0000762:46770..47904 (Clytia hemisphaerica)
ttacgAGATAAtcaattttggattttgaaaatgtttctttCTCCAAATCA
AGAACAACATCAATACCAAAGAAATGACCATACATGATGGACAAACatat
aaaatatattcaaaggCAAAAGCTGCAGTGAACAAAGCAAAGGTTGCTCC
TAATCTTGAGAACATCAAACGAATACTTTCAGAAAATGCTTGAATCTTGG
ATGGAACCATTTGGGCCAAAACACTCATCGTGAGTAACTCATCAACGAAG
ACAATAGTAGACATCATAAAAGGATATATAACCCATAATGCCACATTAAA
CCATTCTATGCTGTTAACCAAacggaaatataaaaaaattccaaacgtGT
AGCATGTTGCTATAAAACTGGCAATCCCAATATTGACCAACTGATTCTTT
GATGGTGGTTTGAATACCAAGACCAAACAAGTTGAACTGATAATGATGCC
GTTGAACAGGAAAATGAGATTGATTTCCAGAACTGTCCAGTTTAATAACT
TGATGACTGCCATAGATATCCATAGATCTTGCAATAGTATTGTGATGTAa
gcgaaaaacgcgaaaacaAAAATCAGAACGATGTCGATTGAAGAAAACAG
CTTCATAATGATCTCCATTATTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029656-exon-sc0000762-1491911889:46770..47904 | TCONS_00029656-exon-sc0000762-1491911889:46770..47904 | Clytia hemisphaerica | exon |
| TCONS_00029656-exon-sc0000762-1510915933:46770..47904 | TCONS_00029656-exon-sc0000762-1510915933:46770..47904 | Clytia hemisphaerica | exon |
| TCONS_00029656-exon-sc0000762-1575043694:46770..47904 | TCONS_00029656-exon-sc0000762-1575043694:46770..47904 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000762 | supercontig | sc0000762:46770..47904 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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