TCONS_00029644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029644
Unique NameTCONS_00029644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029644 ID=TCONS_00029644|Name=TCONS_00029644|organism=Clytia hemisphaerica|type=transcript|length=473bp
CTGTTCCCGGTTGTGACTTTAACCGGTCACACccataatatttcaaaaaa
atccaagatggcgggTGCAGTCGCATGTGTTCgaagatttggaaattttt
cttgtttatgTGGCTTTTCACGTCTATCATCGCTAACGAATCTGACCAGA
AATTACTCTAGAACTTTAACTACTCCGAAACCTTCGaatctaaaaataat
ttgcagcagAAAACCATACCAAATTGCACACTACTATGTTAAAAGCAAAC
CAAAAGATCCTCATGCCTTGTCTTGGAAAGCTGTTTTTGCACTTTGCTCT
GGAATTTCGTGTGGAATTGGATTTAGCATCGCCTATTTagGTCAAGTCAG
AGACGAGGAAAACGATATCTACAAAGATGAAAACATAGTACTGGCACACT
TATACAGAGCTCGGGACTGGCTTCATGAATTCAAAGaatcatttgcagaa
ccatcatcagatctgttgttacc
Run BLAST on NCBI

transcript from alignment at sc0000762:58648..65961+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029644 ID=TCONS_00029644|Name=TCONS_00029644|organism=Clytia hemisphaerica|type=transcript|length=7314bp|location=Sequence derived from alignment at sc0000762:58648..65961+ (Clytia hemisphaerica)
CTGTTCCCGGTTGTGACTTTAACCGGTCACACccataatatttcaaaaaa
atccaagatggcgggTGCAGTCGCATGTGTTCgaagatttggaaattttt
cttgtttatgTGGCTTTTCACGTCTATCATCGCTAACGAATCTGACCAGA
AATTACTCTAGAACTTTAACTACTCCGAAACCTTCGaatctaaaaataat
ttgcagcagAAAACCATACCAAATTGCACACTACTATGTTAAAAGCAAAC
CAAAAGATCCTCATGCCTTGTCTTGGAAAGCTGTTTTTGCACTTTGCTCT
GGAATTTCGTGTGGAATTGGATTTAGCATCGCCTATTTaggtatttttta
tttgttttcattaTAACATAGTTTAAAGAGAAGGGTTGGAGCCAGAAATA
CAGAAGCAGCCTGGATGGAATTACAGACCTGCCAATAACTAAACCTCTTG
ATGATTGAGATGtccatttttattttgtgtgagataaaaaatttccaagt
gaaatCCGAAATCTTAGCCCGGTTTTCCGATCTTCAAAAATCGGAAATAG
GGGAaactttttccgaaaatcgaaaaatcaatcaattaaaacttcTTTCC
AAAAACCAGGCCATATTATTGGGGAAACGTTTTTCCAGAAACCGTTACAT
CAGGGAAATATTTTTTCGGAAATCACAAAGCcttttgatggctatgcaag
ttttcctccattgatgcaagttacccaacttcacggtagTTATCTTTAAA
Tgtgtaccgtgaagtcgggtaacttgcatcagtggtagggtggacaggcc
aaaattttcccctcaatttttagaaaccaaactaattttatttgaaagtc
cttaggcggtcatcgaaaaaatgctctgttcgcgtcgcaacgggtgttaa
aaatgcatgcgggcggacgggcggttAAAAACATTCCcggtttttttaat
cacgccagttaactcaggggcgggtggtgtaacgcgagcaaaacaatttt
tcgatggtcgtcagagcaattgagaaaaaagctatactttaaaagaacaa
atggcttttcccagattttaatccgcatctccgcaccggaaaatcagcgg
aaaatttgatgggggcgggtgacgcgattagaacaatttttcgatgaccg
ccttacctttgtgagaaaaatgaggggtcatttattagaattggttaagt
atagacctttttttaaagaggcaaccatgttgaataattatgtactccag
cataaaaacaatgatacagccagccatgcataattttaaaaatatgcatg
atacagtaattatgcatggctatatcattgtttttatgctggagtacata
attattcaatatggctgcctctttaaaaaaaggtctattcccaaagttat
tatatatatatataaaattttactATTTCCTATTCCTAGAAAATAAGGAC
AGAGAGCCCTTTAAGAAGACTCTCTGTCTATCTTGCATTTTTCTTTGCAA
TANNNNNNTTGCAATAGCCAGTCCACAAAACTTTTCAATCGAACAATTCT
CATTTTTAATTACTTGATCGAGTAAAGTCAAAGAAATTCTACCACGTTTG
CAATTTTTATCATCGTTAAACATTAACAATTTACTCAAGCGACCAGAAGG
CATTCTCACAACATGAGCTGCGTAGTTTCGTTGCTGTTGTTTGATAAAAA
CATTAACATCTGAGGCACCACATATAGTGTGAAGCTGGTTGTTGCTAATG
ACGTATCGAAAATCATTATTGACCTCATCTACATAACGAAATCCACCTCT
GATCATTCTCCTCAAAAACATTCTATAGGTGACATCGAGGCGATCGTACT
GGAGAGACGTTAAGTTCCAGTTCTGACATGAATACGTTAACCGGCTCCTG
ACGAAACTGTTGAGGAAGAAGATACGAACACGTAGGTTGATTTGGAAGTN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTAATTT
GCAGACGGTTGATCCTATACTAATTCCGCGGTATTTTGTTGGGTCTTTCT
TTGAACCTTTCCCTTTCCACAATGTCTTAAGTCTAGAGTTTCCCCACACA
CCAGGGATGTCGAGATTATCCCACAGGTTGAACATCATTCTCTGTATCAC
CTGAAGCATGATTGGTTCGGTACATCCattttgcgcggaacgaggaaaaa
ttcacaaaaatgaacttcaatgcattagtacttacctttagatcatccaa
atctgttcattcttttttttaaatcaatcaggaattatcagggaaacaag
ttaaaaaaattctgcatccaggtatctattttctttccaaagatattcat
gtttttcaatGTCAAGGTGAAAAtgcgatttagcgctgaccacggcaccg
gaaaattctcgacccacattgaaacaaatggctgtcgctattgagctggt
tcatcttttcaatcgtggttttttttagtaaacccagggtaagattaggc
ttccgcgcatattccattttcaaaacacaaaaaaatcaccttttcaaagc
atggcctccttacaccacgccagcaagaaatagttttcggaagcaccaaa
atcgcgccaaaaatggaggatgaaatctagtcttccgtatGGCGGGAAGT
GGGGAGTTTTGCCGGTGCGGTCTGAAATAAGCCCGAcaactgttaaactt
tagcttattgctaatgagctggaaatgatagctaaaaacaaatttcacca
ctagaaagctgaaatcctcagctttcaggtGGTGTAcggtgcttaaatga
aaaaatctgcaatcttgttaaaaaatcgcaatttcttcttatttttcgaa
attccagacagcctgtagattttcaaataaagcactttgtgatagattgt
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNcacgattgaaaagatgaaccagctcaatagcgacagccatt
tgtttcaatgtgggtcgagaattttccggtgccgtggtcagcgctaaatc
gcaTTTTCACCTTGACattgaaaaacatgaatatctttggaaagaaaata
gatacctggatgcagaatttttttaacttgtttccctgataattcctgat
tgatttaaaaaaaagaatgaacagatttggatgatctaaaggtaagtact
aatgcattgaagttcatttttgtgaatttttcctcgttccgcgcaaaaaa
tcccgacgggTGCGCACCCTATCAGTGGAGGGTAACTTAGGGGGGTCACT
CgcaaatcgattttaggttagaagaTCGTTaattgacgttttaaaagctg
acccacccacccacacccaaacgtcaaacaccttgatatccccgaaaatc
gataaaaactgccttcatcactgtttcgtcagccatcttgattttcacta
cGGCTCGCATACCCTAGAATCGTCTAATATAGACACCCCTCCTTTAAAGT
CGACACccgatctgtaaaataatcaaaacaaaccctgaatgaaattcttg
gtatcattcttatcaaacaagttcatccatcaaactagaagttcagtaaa
cattgcaattctttcaattaaaaaagcagccaaattatataagcaatttc
acacaacaTATGAAAcatgaaacgcatgcaaacttatTAATAATCGTTCT
CGtgcccatcattaaaattttacatttttattacGCGTgataaaactaat
tttcgcgtttaGTCAGCCTGGTTTGTTGTTAAAGAGGGTCAAAACAGGCC
ATAAACAGGCAAAAATGGctttttttacccattttctcCTTGCGAGCCCT
CAGAAAacataaaaagataaaatttaaaaagagataaaaagatATGGACT
GATGTTACTGGCAAAAAAAACGGCTTCTCAATAGTAATTCCTTACCCGAG
CTCTTTTAGGACCCCCTAATTCAAAAGCCCCCTTAAAACGCTATTTACCT
CTTCATTCCATAAACTGGATGTTGAGGAGCACGAAAATTGTATAGAAAAA
TACTACCCCTCTAGGTTGGCGCTACTAGGCACTCAGGAGCTGGTCTAAAA
ACACATGGCTTGAAGCTGTAAGGAGATTCCCTGCCATTGAGAATAGTAGG
GACAGTAGGGTTTTTTCTGATACTCATAACTTTTTCCAGGTCTCAGGCTT
ATTCTACCTGACTAATTGATCTGAACCCCCTAATCTATAGCGGCAAAAAA
CATTCACTTTTACNgccaattttcagcttgatggcaATTTTGTGCAGGTC
TCAggctaattctacctgactaattGATCTGAACCCCCTAATCCATAGCG
GCAAAAAACATTCGCTTTTATTGGCTTGCTGGCTTGTTGCGCTGGCTTAT
TCAGGCCTGCTGGAACAACCGTTAAAAAGTgaggaggctgaaggctcaaa
atgagataaaatttgctaGGGATTGTTCAAAAGTGGTAAGGCTAAAATGA
GTTGAAATTTTCATCAATCAACCTAAGGATAAGTGACCTGGGAAACTGCT
TGTAACCTTAATAAAAAAGCAGATATTCTCACATCATGTTATATAATTAA
ACCTTGTTCAACTAGATCAAAGTTATGGTCTAAATTCTaaacattacttt
tcaaaaaaggcaaaaaattagGGTATAAAATTTATTGTAAAGCAAAAACA
CAAATGTTGCTCATTCATCAGGAaatgtattttcactttttaatccAAAG
CACTTATTTACACGATCAACCATTCCTGCAAAAGCGTTTCAAATCATTTG
AGGGTCTAGATTAGCTGCAACATTTCTGATTGAagcttttaaatttgatc
gaggGTCTGCGGTCGCAAAATTTGGGGTTGCTCCCAGAACTGTTGTTTCT
TGTGACCCCACAAAAAGAAATCAACACAGTGAGATCAAGCGATATTTGGG
GCTACTAGACATCCCCTTGATTGTTGACCATCTTACTTGGAAACTGGCCA
CGAAGGGCCACGAAAAGACTTTGATCGTTAataaattgattaaaaataGT
GCTTTTTTATGGTGATTTAATACCCTCGATGTTCTCATTGATTATTTCAG
ATTATTTAACAGTCCatggaatttgagaaaattcacttcaaagaggggga
cttttttcttggaCACCTGGTATTACTTTGTACATTCTCTGGACTGCTTT
AAAGTATTTAAAAACAATTCTTTTACtctttttcacacaaaaaacaCTGT
TTATCCAGGCAAAATTGATACCTTACTAATACAAATCATTTTTTATTATC
TTCAGGTCAAGTCAGAGACGAGGTAtgaattgttttattatctTAATTTC
TTTGACCGATCGGATCTTTCTGTAAACTTACCAAAATAGTTTGTAGTTTG
GCGTCGAGTCTAAGCTGAGTTATTAGATGAATTTTCACCTTTGTAATTTC
TTAGTTTTATATAATCTATTATTTTTCTGCAGGAAAACGATATCTACAAA
GATGGTAAGATATTGTTTTAATAAACCTTGgtcaagaaattttgaaaatt
ctaattttctttaaaaaccaaATCCGCCtgatttttattcatttttcgtT
TCTCAACTTTTCAGCGTTTCTGTTACGAAGTATTAAGCAAACGATATTAT
GTTTTTGCTGTGCATAGCTTGGTATACCCTGGTCTAGATAGTTGTAAACC
CACAATCATTACATTTTCAAAGTACACATGTATGCGCTGCCTTCTGATTT
TAGATCAAGAAAAATACTTTACTGACTGGATCCTTAGGCTAGATCTACCT
TTTAAATACTCGTTTAAAACTTTATCTCTTTTATTACAGAAAACATAGTA
CTGGCACACTTATACAGAGCTCGGGACTGGCTTCATGAATTCAAAGaagt
aattctttttaaaatatattttttttcatttcttatgTCGGAAAACGTGA
TAGCGAAAAGGGGTGATCATTTTTTATCATGATGTATTTTAGTAGTCAAG
ATTGCTAATTGCCATGTTCAATTCTCTTTGTattatttgagaaattttta
taGTTCGCTCCCCTTTTTTATAGGGGGGATGCTAACTTTTTTGGAGGCCT
TAGTAGGGGGGGCaccaaaatttgccaaaaacaTCTGGGTATAATTCTGG
CATGATTACTTTTCAGTGGTTACTATTCACAACTCTTAATAATATTTTCC
TTGGAAACGATTTTATCAAGGAGGAAGGGAAAATGAGGTAGATCAAATAA
GACAGAACTGTCACATTTGCTCATGATGGTTCAATTTTTTCGTAAAATAT
TGAATACAGAGATAATGTTTCTATCAgtcatttgcagaaccatcatcatA
TCTGTTGTCACCAGACCCTTTAccagagaaaatctttctttcagtcattt
gcagaaccatcatcagatctgttgctaccagacccttaatcagagaaaat
ctttctttcaatcatttgcagaaccatcatcagatcTGTTGTCACCAGAC
CCTttaatcagagaaaatctttctttcagtcatttgcagaaccatcatca
gatctgttgttacc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016942XLOC_016942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029644-exon-sc0000762-1491911889:58648..58987TCONS_00029644-exon-sc0000762-1491911889:58648..58987Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1510915933:58648..58987TCONS_00029644-exon-sc0000762-1510915933:58648..58987Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1575043694:58648..58987TCONS_00029644-exon-sc0000762-1575043694:58648..58987Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1491911889:64703..64719TCONS_00029644-exon-sc0000762-1491911889:64703..64719Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1510915933:64703..64719TCONS_00029644-exon-sc0000762-1510915933:64703..64719Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1575043694:64703..64719TCONS_00029644-exon-sc0000762-1575043694:64703..64719Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1491911889:64880..64901TCONS_00029644-exon-sc0000762-1491911889:64880..64901Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1510915933:64880..64901TCONS_00029644-exon-sc0000762-1510915933:64880..64901Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1575043694:64880..64901TCONS_00029644-exon-sc0000762-1575043694:64880..64901Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1491911889:65237..65295TCONS_00029644-exon-sc0000762-1491911889:65237..65295Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1510915933:65237..65295TCONS_00029644-exon-sc0000762-1510915933:65237..65295Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1575043694:65237..65295TCONS_00029644-exon-sc0000762-1575043694:65237..65295Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1491911889:65927..65961TCONS_00029644-exon-sc0000762-1491911889:65927..65961Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1510915933:65927..65961TCONS_00029644-exon-sc0000762-1510915933:65927..65961Clytia hemisphaericaexon
TCONS_00029644-exon-sc0000762-1575043694:65927..65961TCONS_00029644-exon-sc0000762-1575043694:65927..65961Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000762supercontigsc0000762:58648..65961 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
51.7201	52.3598	27.1428	15.6209	34.0007	30.1203	20.4938	15.5222	10.8042	17.0509	9.54241	11.0369	7.13218	6.02466	6.0807	7.84866	13.9885	18.7139	1.4648	3.38472	18.0221	25.8677	27.3444	22.8766	18.4525	16.6908	8.60995	7.42919	19.3553	17.5327
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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