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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029641 ID=TCONS_00029641|Name=TCONS_00029641|organism=Clytia hemisphaerica|type=transcript|length=2092bpRun BLAST on NCBI protein sequence of TCONS_00029641-protein >TCONS_00029641-protein ID=TCONS_00029641-protein|Name=TCONS_00029641-protein|organism=Clytia hemisphaerica|type=polypeptide|length=377bp WYYLFPVVTLTGHTHNISKKSKMAGAVACVRRFGNFSCLCGFSRLSSLTNRun BLAST on NCBI transcript from alignment at sc0000762:58637..78721+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029641 ID=TCONS_00029641|Name=TCONS_00029641|organism=Clytia hemisphaerica|type=transcript|length=20085bp|location=Sequence derived from alignment at sc0000762:58637..78721+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000762:58637..78721+ >TCONS_00029641 ID=TCONS_00029641|Name=TCONS_00029641|organism=Clytia hemisphaerica|type=CDS|length=11340bp|location=Sequence derived from alignment at sc0000762:58637..78721+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00029641 vs. Swiss-Prot (Human)
Match: TIM50 (Mitochondrial import inner membrane translocase subunit TIM50 OS=Homo sapiens GN=TIMM50 PE=1 SV=2) HSP 1 Score: 202.216 bits (513), Expect = 5.837e-58 Identity = 127/308 (41.23%), Postives = 182/308 (59.09%), Query Frame = 3
Query: 126 FSRLSSLTNL-TRNYSRTLTTP---KPSNLKIICSRKPYQIAHYYVKSKPKDPHALSWKAVFALCSGISCGIGFSIAYL-GQVRDEEN-----DIYKDENIVLAHLYRARDWLHEFKESFAXXXXXXXXXXXXXXXYIQPKYTLVLELTDVLVHPEYTTTSGWRFRKRPGVSQFLKALTLPMFEIVIYTHENGFSSAPVIDGVDPEGFIMYRLFRDATKYTNGTHVKDLSRLNRDITKVILVDCDSRTSQLQPRNSLVLKKWNGDPKDTDLFELIPFFHMIATSNVDDVRPILDFYRNEEDPVAAWRR 1019
FSRL S L +R L TP P I SR + + + P + + K L + G S+ Y+ G +EN D + ++ I++ L R + ++++ EP+S LLPDPL EPY QP YTLVLELT VL+HPE++ +GWRF+KRPG+ + L P++EIVI+T E G ++ P+ID VDP GFI YRLFRDAT+Y +G HVKD+S LNRD +V++VDC +LQP N + L+ W+G+ D L +L F IA + V+DVR +L+ Y E+DP+AA+++
Sbjct: 8 FSRLRSGLRLGSRGLCTRLATPPRRAPDQAAEIGSRGSTKAQGPQQQPGSEGP-SYAKKVALWLAGLLGAGGTVSVVYIFGNNPVDENGAKIPDEFDNDPILVQQLRRTYKYFKDYRQMIIEPTSPCLLPDPLQEPYYQPPYTLVLELTGVLLHPEWSLATGWRFKKRPGIETLFQQLA-PLYEIVIFTSETGMTAFPLIDSVDPHGFISYRLFRDATRYMDGHHVKDISCLNRDPARVVVVDCKKEAFRLQPYNGVALRPWDGNSDDRVLLDLSAFLKTIALNGVEDVRTVLEHYALEDDPLAAFKQ 313 The following BLAST results are available for this feature:
BLAST of TCONS_00029641 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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