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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029640 ID=TCONS_00029640|Name=TCONS_00029640|organism=Clytia hemisphaerica|type=transcript|length=1340bp
TTTGGATGAGAGTACCATGAGTTCTATTACTGAGATAGGACGAAATTAAT
TCAAAAGGTTTGCCTCTGACACCATAGTGACGAAGTTTATGAAGAAGGAT
ACTGTGTTCCACAGTATCAAACGCTTTTTTAAGATCAATAAAAATTCCTG
CAGCAAATTCTTTGTTATCAAGGGCTTCTCTCACTAGTTCAGTGAGAGCA
ATTATTGCATGGTTTGTGCTGTGACGCTCTCTGAATCCAAATTGGTTTTT
GAAGATAATGTCGTGTTGGGTAAAAAATTCAGAGAGTCTGAAGTGAATaa
gtttctcaaaaattttgttgatattgGATAACAGAGAAATGGGTCGGTAG
TTACCGATCTCTAATTTAGAGGCTTTCTTGTGCAGAGGTTTGATAGAGGC
TTTTTTCAAACAGTCAGGATAAGTTCCAGACTGGAGGCATTCATTGAAGA
TGTCAGCAAGAATGATGGATGCCCTAGGACTAATGAGTTTTAGGAAAAAC
GTGGGAATACTCGATGGACCGTTTGCCTTTTTCTCGTCGAGTTCATTGAT
TAATTTATTGATGACATCAGGAGATGTGGGGTGAAAAAACACAGAATCAG
GGTTAGGCGCACCAAGATAGTCAGTGAAGACTTTATCCGTAGGTGGAATT
TCAGCTTTGGTCTTATCAGCAATAGAACCATAGTACTCATTGAAAGCTTC
agcaatttcttcatttttgcataattttttttggttttggaTGATAAGTT
TTGGACTCAAGTCAGATTTAGATTTGCTGTTGGTCACTTCATGGATGGCA
CCCCAGACAAGTTTCAAATTGGTTTTATGgtcattgaaatattttttgta
atattCAGCTTTACTTTGTCTCATTATTTTCAGTAgaagatttttgtatt
ttttataagccttgtgtttttcttgctttaagGCAGGTGTTTTGGatcta
aagtattttttttgGAGGATATCTCTTGTGTTAATAGACTTCAGTATGCC
TGCTGTTATCCAAGGTTTTCGAGCTTTtgtatatttgtttttaaaagatt
tcattGGTGCATGTCTGTCAATTACTTCGGTTGTTTGATTGATAAAGATG
TTGAGTTTCTCACCAGgtgttttttcagcaaaaaggtTTTCCCAAGAGAT
AACTGAGAActcatgaaaaaaattgtttcgatcaaattttctgaaatctc
ttttaaagattttagctttttgattttgtttggttttgacATTCCAGTTA
AGAATAGCATACTGAGGTAGATGGTCCGAAATTGAGGTAATCAAGTTTCC
AGCCTGAACAACTTCTTTGAGACTATTGGTAAAAATGTTG Run BLAST on NCBI protein sequence of TCONS_00029640-protein >TCONS_00029640-protein ID=TCONS_00029640-protein|Name=TCONS_00029640-protein|organism=Clytia hemisphaerica|type=polypeptide|length=446bp
NIFTNSLKEVVQAGNLITSISDHLPQYAILNWNVKTKQNQKAKIFKRDFR
KFDRNNFFHEFSVISWENLFAEKTPGEKLNIFINQTTEVIDRHAPMKSFK
NKYTKARKPWITAGILKSINTRDILQKKYFRSKTPALKQEKHKAYKKYKN
LLLKIMRQSKAEYYKKYFNDHKTNLKLVWGAIHEVTNSKSKSDLSPKLII
QNQKKLCKNEEIAEAFNEYYGSIADKTKAEIPPTDKVFTDYLGAPNPDSV
FFHPTSPDVINKLINELDEKKANGPSSIPTFFLKLISPRASIILADIFNE
CLQSGTYPDCLKKASIKPLHKKASKLEIGNYRPISLLSNINKIFEKLIHF
RLSEFFTQHDIIFKNQFGFRERHSTNHAIIALTELVREALDNKEFAAGIF
IDLKKAFDTVEHSILLHKLRHYGVRGKPFELISSYLSNRTHGTLIQ Run BLAST on NCBI transcript from alignment at sc0000760:160785..162124 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029640 ID=TCONS_00029640|Name=TCONS_00029640|organism=Clytia hemisphaerica|type=transcript|length=1340bp|location=Sequence derived from alignment at sc0000760:160785..162124 (Clytia hemisphaerica)
CAACATTTTTACCAATAGTCTCAAAGAAGTTGTTCAGGCTGGAAACTTGA
TTACCTCAATTTCGGACCATCTACCTCAGTATGCTATTCTTAACTGGAAT
gtcaaaaccaaacaaaatcaaaaagctaaaatctttaaaagagatttcag
aaaatttgatcgaaacaatttttttcatgagTTCTCAGTTATCTCTTGGG
AAAacctttttgctgaaaaaacacCTGGTGAGAAACTCAACATCTTTATC
AATCAAACAACCGAAGTAATTGACAGACATGCACCaatgaaatcttttaa
aaacaaatatacaAAAGCTCGAAAACCTTGGATAACAGCAGGCATACTGA
AGTCTATTAACACAAGAGATATCCTCcaaaaaaaatactttagatCCAAA
ACACCTGCcttaaagcaagaaaaacacaaggcttataaaaaatacaaaaa
tcttcTACTGAAAATAATGAGACAAAGTAAAGCTGaatattacaaaaaat
atttcaatgacCATAAAACCAATTTGAAACTTGTCTGGGGTGCCATCCAT
GAAGTGACCAACAGCAAATCTAAATCTGACTTGAGTCCAAAACTTATCAt
ccaaaaccaaaaaaaattatgcaaaaatgaagaaattgctGAAGCTTTCA
ATGAGTACTATGGTTCTATTGCTGATAAGACCAAAGCTGAAATTCCACCT
ACGGATAAAGTCTTCACTGACTATCTTGGTGCGCCTAACCCTGATTCTGT
GTTTTTTCACCCCACATCTCCTGATGTCATCAATAAATTAATCAATGAAC
TCGACGAGAAAAAGGCAAACGGTCCATCGAGTATTCCCACGTTTTTCCTA
AAACTCATTAGTCCTAGGGCATCCATCATTCTTGCTGACATCTTCAATGA
ATGCCTCCAGTCTGGAACTTATCCTGACTGTTTGAAAAAAGCCTCTATCA
AACCTCTGCACAAGAAAGCCTCTAAATTAGAGATCGGTAACTACCGACCC
ATTTCTCTGTTATCcaatatcaacaaaatttttgagaaacttATTCACTT
CAGACTCTCTGAATTTTTTACCCAACACGACATTATCTTCAAAAACCAAT
TTGGATTCAGAGAGCGTCACAGCACAAACCATGCAATAATTGCTCTCACT
GAACTAGTGAGAGAAGCCCTTGATAACAAAGAATTTGCTGCAGGAATTTT
TATTGATCTTAAAAAAGCGTTTGATACTGTGGAACACAGTATCCTTCTTC
ATAAACTTCGTCACTATGGTGTCAGAGGCAAACCTTTTGAATTAATTTCG
TCCTATCTCAGTAATAGAACTCATGGTACTCTCATCCAAA Coding sequence (CDS) from alignment at sc0000760:160785..162124 >TCONS_00029640 ID=TCONS_00029640|Name=TCONS_00029640|organism=Clytia hemisphaerica|type=CDS|length=1338bp|location=Sequence derived from alignment at sc0000760:160785..162124 (Clytia hemisphaerica)
AACATTTTTACCAATAGTCTCAAAGAAGTTGTTCAGGCTGGAAACTTGAT
TACCTCAATTTCGGACCATCTACCTCAGTATGCTATTCTTAACTGGAATg
tcaaaaccaaacaaaatcaaaaagctaaaatctttaaaagagatttcaga
aaatttgatcgaaacaatttttttcatgagTTCTCAGTTATCTCTTGGGA
AAacctttttgctgaaaaaacacCTGGTGAGAAACTCAACATCTTTATCA
ATCAAACAACCGAAGTAATTGACAGACATGCACCaatgaaatcttttaaa
aacaaatatacaAAAGCTCGAAAACCTTGGATAACAGCAGGCATACTGAA
GTCTATTAACACAAGAGATATCCTCcaaaaaaaatactttagatCCAAAA
CACCTGCcttaaagcaagaaaaacacaaggcttataaaaaatacaaaaat
cttcTACTGAAAATAATGAGACAAAGTAAAGCTGaatattacaaaaaata
tttcaatgacCATAAAACCAATTTGAAACTTGTCTGGGGTGCCATCCATG
AAGTGACCAACAGCAAATCTAAATCTGACTTGAGTCCAAAACTTATCAtc
caaaaccaaaaaaaattatgcaaaaatgaagaaattgctGAAGCTTTCAA
TGAGTACTATGGTTCTATTGCTGATAAGACCAAAGCTGAAATTCCACCTA
CGGATAAAGTCTTCACTGACTATCTTGGTGCGCCTAACCCTGATTCTGTG
TTTTTTCACCCCACATCTCCTGATGTCATCAATAAATTAATCAATGAACT
CGACGAGAAAAAGGCAAACGGTCCATCGAGTATTCCCACGTTTTTCCTAA
AACTCATTAGTCCTAGGGCATCCATCATTCTTGCTGACATCTTCAATGAA
TGCCTCCAGTCTGGAACTTATCCTGACTGTTTGAAAAAAGCCTCTATCAA
ACCTCTGCACAAGAAAGCCTCTAAATTAGAGATCGGTAACTACCGACCCA
TTTCTCTGTTATCcaatatcaacaaaatttttgagaaacttATTCACTTC
AGACTCTCTGAATTTTTTACCCAACACGACATTATCTTCAAAAACCAATT
TGGATTCAGAGAGCGTCACAGCACAAACCATGCAATAATTGCTCTCACTG
AACTAGTGAGAGAAGCCCTTGATAACAAAGAATTTGCTGCAGGAATTTTT
ATTGATCTTAAAAAAGCGTTTGATACTGTGGAACACAGTATCCTTCTTCA
TAAACTTCGTCACTATGGTGTCAGAGGCAAACCTTTTGAATTAATTTCGT
CCTATCTCAGTAATAGAACTCATGGTACTCTCATCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029640-exon-sc0000760-1491911889:160785..162124 | TCONS_00029640-exon-sc0000760-1491911889:160785..162124 | Clytia hemisphaerica | exon |
| TCONS_00029640-exon-sc0000760-1510915933:160785..162124 | TCONS_00029640-exon-sc0000760-1510915933:160785..162124 | Clytia hemisphaerica | exon |
| TCONS_00029640-exon-sc0000760-1575043694:160785..162124 | TCONS_00029640-exon-sc0000760-1575043694:160785..162124 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000760 | supercontig | sc0000760:160785..162124 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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