TCONS_00029607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029607
Unique NameTCONS_00029607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2038

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029607 ID=TCONS_00029607|Name=TCONS_00029607|organism=Clytia hemisphaerica|type=transcript|length=2038bp
CTACCAAACCCCGGGTTTTCAGTTTTCATAGAATCCGTCTACCATTACTA
CGacatcaaaaaattaagaaaacgCGGGCTGTCGGTATATCGTCTTTGAT
CGCATTTTAGTAGATAATAGAGCTTTAGAATAACACGGATATATGAAATA
ATGTATATACGGTCGATTCGCAACTGATAATTTGCCATGAATGTAACACA
AGGTAATCAGTACTACTTTGGCAATCAACTTGCTAACACCGAATTGTTAA
ACTTCTCCAGAACGTTCATTTGTTAATTTTGTTGTGAGAGACGTACGGAT
TTGACAAATTCTCACATCATTTGATTGTTGTTTTggattgtgcaaaattt
ggTATTGCATTTTTCAAGCTTGATTGGAAACACGTTTCAAAATGAAGTCC
GATTTTTCAATGGCATCGATTTTGAATCGAAAAAGTGAAGTCGATAAAAA
TGAAGTGAAACTGTTAAAAGATGTTAATATGAGAATCGCACTTGAGGATG
CTGATTTATGGCGAAGTTTCCACAGAATGACTAACGAGATGATTGTCACC
AAAAATGGAAGGCGTATGTTTCCTGTATTAAAGTCACGAGCCAACGGTTT
AGACCCTACAGCAATGTACACAGTCATGTTAGACTTTATGCCAGTAGATG
ACCACCGATGGAAATATGTCAACGGGGAATGGTCACACGCAGGGAAACCA
GAACCAACGGCCGCAAGTAAAATCTACGTTCATCCAGACTCACCAAACTT
CGGCGCTCATTGGATGAAAAGTCCGAttgtattttcaaaagtcaaattaa
CAAATAAAGAAAACGAAAACGGGCAAGTGTTGATGCTCAATTCCCTCCAC
AAATACGTCCCACGAATTCACATAGTCAAAGTTGGCAATGGAGAAAAAGT
CGTATCAACGTATTCGTTTGTCGAGACAGAATTTATTGCCGTCACGGCGT
ACCAAAATGAAGAaattacaaatttaaaaatacgtTATAATCCATTCGCA
AAAGCATTCCTCGACGCAAAAGAACGTAACGACCACCGTGAATACGTAGA
GCGACGTAACTCATTTTGTAGTTGCTGTCCGCCGTCATCACCTTACGCAC
TACCGGGACACCATTTCCCGACACACCTTCCGTCACCACATTACATGGGC
GCAACGACGTGCGGAGCCGAAAAACTTTTAATGAGGCATCACCCGTATTC
TAGACCCACATCATATTACCCATCATACAATCGTTCAAGATCAACCACAT
TCTCCGATATCCCTTCACCAACCAAAAGTTCACCATTAAGTTCATCCTAC
CCCACAACACACTTCAAGTATGATGACGATATTCACCGTCATTCTATTTC
TCCGCCCATATCTACCCGCCATTCACCGCCTACACTGATTCGCAGCGATG
TATTATCTTACCAAGATCAACTGAGAATTAAACTAGAAGCTTCAAACATT
CATCATCGCTTTCATCAAAATAACATAAACCCTAACGGACAAATTGAACT
TAGACATACAGCAATTTCTagataatttaattttcaatttttcagtctCC
CATACTTTGTATATACTTTTTCTTAgagataattttttcttatcgttctt
ttttaaattcttctaaaacacttttttaaacAGGTCCTCTATTGCAAAAA
ACCTTCATGGTAATTTTTCGGAAAAGTGAGTTTACTTCTCAATTTTCTTA
CCAGTTTTGGTTGTAAATATCTTTCTCGACtttctttgaaggaaaagatC
CCAATAGTTACCGAAGAGAGGATTCTACATGGCTtaaatagataaaaata
ttatttttgaagaatattttgatGACACTTGTAAATaacaaaaggaacaa
acaaaGCTTTTACAATGTAAATATAATTAATTGAACAAAACgactaattt
aaaaaaagatgcaCAAATTCACaaacaaacataaacaaaggaaatatTGN
TTGTAAATATAATTAATTGAATAAAACgactaatttaaaaaaagatgcaC
AAATTCACaaacaaacataaacaaaggaaatattgttg
Run BLAST on NCBI

protein sequence of Bra2 brachyury transcription factor

>TCONS_00029607-protein ID=TCONS_00029607-protein|Name=Bra2 brachyury transcription factor|organism=Clytia hemisphaerica|type=polypeptide|length=377bp
MKSDFSMASILNRKSEVDKNEVKLLKDVNMRIALEDADLWRSFHRMTNEM
IVTKNGRRMFPVLKSRANGLDPTAMYTVMLDFMPVDDHRWKYVNGEWSHA
GKPEPTAASKIYVHPDSPNFGAHWMKSPIVFSKVKLTNKENENGQVLMLN
SLHKYVPRIHIVKVGNGEKVVSTYSFVETEFIAVTAYQNEEITNLKIRYN
PFAKAFLDAKERNDHREYVERRNSFCSCCPPSSPYALPGHHFPTHLPSPH
YMGATTCGAEKLLMRHHPYSRPTSYYPSYNRSRSTTFSDIPSPTKSSPLS
SSYPTTHFKYDDDIHRHSISPPISTRHSPPTLIRSDVLSYQDQLRIKLEA
SNIHHRFHQNNINPNGQIELRHTAISR
Run BLAST on NCBI

transcript from alignment at sc0000757:36857..45722-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029607 ID=TCONS_00029607|Name=TCONS_00029607|organism=Clytia hemisphaerica|type=transcript|length=8866bp|location=Sequence derived from alignment at sc0000757:36857..45722- (Clytia hemisphaerica)
CTACCAAACCCCGGGTTTTCAGTTTTCATAGAATCCGTCTACCATTACTA
CGACATCAAAAAATTAAGAAAACGCGGGCTGTCGGTATATCGTCTTTGAT
CGCATTTTAGTAGATAATAGAGCTTTAGAATAACACGGATATATGAAATA
ATGTATATACGGTCGATTCGCAACTGATAATTTGCCATGAATGTAACACA
AGGTAATCAGTACTACTTTGGCAATCAACTTGCTAACACCGAATTGTTAA
ACTTCTCCAGAACGTTCATTTGTTAATTTTGTTGTGAGAGACGTACGGAT
TTGACAAATTCTCACATCATTTGATTGTTGTTTTGGATTGTGCAAAATTT
GGTATTGCATTTTTCAAGGTAAAAAAACTTGATCAATTTAACAATCTTGT
TCCCTTGTACACCATGGTAGCTTTATGGGATTCTTGATGACACCAGTGTT
TAATCTTTGTAATACCTAGTGCCCCAAATTAAGTACATATCAGTGCACAC
AACGTTTTTTTAACGTTTATCTAACGCTCAAAACGTCCATATAACGTAAG
ATGAACGTTGAAACAACATTGTGTGCCAGCTTGGTAGGATCTAAGGAGGA
TTCAAAATTCATTGCAAAATTTATGTTATTTTTGGCCATGCTCCTTACAA
GAAAATGAAGACTGTACGAAGTAAATTTTGAGCCCCCCTCAGATCCGCTA
TTGATGTTAGAAGCCCGATAATTATATAATTGGGTACAAGGTTGTCTATT
CTTTAATGTTGGATTGTCATTGGTTGTTTGGCTTTTTTACGAGACACCAA
AATACACAGCATTTGCATAGAGCTCGTTTTCCTAATTAATGTCAACATAT
TTTTAATTAGTGTAATGACAAACAACGTTATTTATAAGGCGCCTTCATAT
TTATTTTTGCGATTTCATCAAGATTTATGACTTAATGGGGAGACAACATT
AATAAAAAATCGCACGTAAAAATTTTTTCAATTCCAATTAGAAAACCGCA
GGTTTTTTTATGTATATAGTCGGCCAAAATTAGTAACTGTAGCCTTTTGC
AATTTCTGAACATTACTTATTTTAAAGACTACTTAAAAGGGTGTGCGTTC
TATAGAAATTATCATGAAATTAGTAAAGAAAGGTTAAACATTTTGCTCTA
AAATGCTAGAATACCTAATTCCATTGAATAAACGGGAGAGGAGGAAGAAA
AGACTTCAGGGGCACAAGATGTTTCAATATTTCAAAGAGGGAACTCTAAT
TTGATGTTAACTAGCCCAAATCTGTTCATATCATCGTATCATCCAATAAA
AAAGATACTCTTAAAAAAATGACAAACAAAGCTTCACCCGGCTCATGGTG
CCAGTTATAGATCAGAAGGATTCGCCGCTTTTACGGCGGTTACGACGCGG
CACTGTGGGTCTATTAAAAACTCATTAACGAGGTGTTTAATTACCCTGTA
TTTAATGATTGAATGAAAAACATTACTATACTCCTTTTCTTTATTTAATA
TAAAAGATATTTAATGACCCTCCTCAAGAAAAATTTGGAAACTACAAATC
AGTTAGATTTTTCATTTTTGCGTCATTTGATTATAGAAGTGAACTAGACG
GGTAGCGAGCGGATCTCTGACCTGAAATATTGACGTATTTTATTTTCGGT
GTTTATAGCTTGATTGGAAACACGTTTCAAAATGAAGTCCGATTTTTCAA
TGGCATCGATTTTGAATCGAAAAAGTGAAGTCGATAAAAATGAAGTGAAA
CTGTTAAAAGATGTTAATATGAGAATCGCACTTGAGGATGCTGATTTATG
GCGAAGTTTCCACAGAATGACTAACGAGATGATTGTCACCAAAAATGGAA
GGTAAATTATTGATACAAATACGTGTCAGTCGGGAAATAGTGTTGTATCT
TGAGTATAATTCAACCTTAAAAGGCTGGAATGTTACTAATGATGCAACAT
TCTTTTCCGGGTGCAATGTATATTTTAGTATTACATACCTTTAGATTTTG
GAGTTTTTCACTATAGTATTACGCTTCATCAATGAACTTTAAAAAGACTT
GATTTTCACATAGGTCTCCGAACGGGGAAGTAGATATAAGCAAAAAATAA
ACTTTCGGCAAACATAAGAAAAAGCGGCTTGAAAATGAGGTCATCTGCGA
CGGAATTCATCGATAAATAAAACATTACGTAAAAGTTCCTTTCTAGTCTT
GTTTCAGGACCTTTTTTAAGAGAAAAAAGGGTTTGTTTTGGGTTCTTTGN
GGCTCATGGTGCCAGTTATAGATCAGAAGGATTCGCCGCTTTTACGGCGG
TTACGACGCGGCGCTGTGGGTCTATTAAAAACTCATTAACGAGGTGTTTA
ATTACCCTGTATTTAATGATTGAATGAAAAACATTACTATACTCTTTTTC
TTTATTTAATATAAAAGATATTTAATGACCCTCCTCAAGAAAAATTTGGA
AACTACAAATCAGTTAGATTTTTCATTTTTGCGTCATTTGATTATAGAAG
TGAACTAGACGGGTAGCGAGCGGATCTCTGACCTGAAATATTGACGTATT
TTATTTTCGGTGTTTATAGCTTGATTGGAAACACGTTTCAAAATGAAGTC
CGATTTTTCAATGGCATCGATTTTGAATCGAAAAAGTGAAGTCGATAAAA
ATGAAGTGAAACTGTTAAAAGATGTTAATATGAGAATCGCACTTGAGGAT
GCTGATTTATGGCGAAGTTTCCACAGAATGACTAACGAGATGATTGTCAC
CAAAAATGGAAGGTAAATTATTGATACAAATACGTGTCAGTCGGGAAATA
GTGTTGTATCTTGAGTATAATTCAACCTTAAAAGGCTGGAATGTTACTAA
TGATGCAACATTCTTTTCCGGGTGCAATGTATATTTTAGTATTACATACC
TTTAGATTTTGGAGTTTTTCACTATAGTATTACGCTTCATCAATGAACTT
TAAAAAGACTTGATTTTCACATAGGTCTCCGAACGGGGAAGTAGATATAA
GCAAAAAATAAACTTTCGGCAAACATAAGAAAAAGCGGCTTGAAAATGAG
GTCATCTGCGACGGAATTCATCGATAAATAAAACATTACGTAAAAGTTCC
TTTCTAGTCTTGTTTCAGGACCTTTTTTAAGAGAAAAAAGGGTTTGTTTT
GGGTTCTTTGCGGTTTTGAATATAATTAGTTATCAGATTTAGGTAAGTTC
AAATATTTGAGTTTCTGTTCCTGGGTTTGAAGACTGTTTTCTTGAAGTAG
CCGTACAGGGAAGGAAAATGCTAATTGTTTTTTCACGGATTTCTGCATTT
AAGCCGATCAAAGGGCCTAAAAAAGTTTGTTTTTAAAGAAAACAGGAATT
TATTTTCAGAAAAGGATATATGTATAGGATTGAGGGCTATATTTGTGGTC
TAGGTTGCAGTGTTTAGAATTGTTTGAAGTGGTTCAACAAGTTTATGGTT
GATACCAGATTCTATGCTAAAACTATATTGACACTTTGACCTCGAAGGCT
TTGTGTTTCTTTGCGTTGATTGTAACAGGTTCAGCCTTAAGGTGTTAAGG
TGTGAAGTGGTAGTAGCCTTAGACTAGCGACTTTGTTTATATAATTTATC
GAGAAGTGAGGATTAAAAATAAGATCCCTAAAAATATCGATACTTATCAA
CTCGGGATTACCAAACTATATTGTCTCAATTTTCAAGGCTAATTATAAAC
AATTAATCCTTCAGTTAATCCTAAACATCCATAAAGAAGAAAAAAGAAGA
AATTTTTAATTATTAAAGGATAACCAGGCAATTTTATCGGATTAAGTTTT
TTCTATTGTGAAAACCCTGACAAAATTATACCCCAAACTTTTTCCGTTTA
AAGAATTTTTTTATGATGTACTTAATGAATTTGAATAGATCAAAAGGTAC
CGGCTATTCCATGACAAATTAAAAATTTAATTGTCGCATAGCTAATTTTT
CATTGTCTATTAAAATTACAGTGATAATTAATTTCACTTTTTTCTTTTCA
CAATTTTCATTAATTATGCCCCTCCGCGGGCCGTCGGTGTTTTTGCGGTA
ACCTTTTGAAAAATTTTCACGCCTTTTTATAAGAACTTTCACACTAGAAA
GAGGGAATTTGATGAGAAATTGGGGTAAACACTAAATTTGAGAGAAGTGA
CACAATCTCGAAACACACTTTTCTTACAATAAAGCACAATCAAACCATCC
GACATATCATTTGGTCTCTTTCAAAAAAAACCACGACGAAATCAAAAAGA
TACCGACAAAACCGATAGAGCAATTCTCACCTAGCCATTTAATTACAATT
GCAATTTAAAAAAGGTCATTTTCAAATGTTTAATTACTATTACAATTTAT
TTTATTCAAAAGCCAAATGAACTACCATCACATCCGTCCNAAGTGTTTAG
AATTGTTTGAAGTGGTTCAACAAGTTTATGGTTGATACCAGATTCTATGC
TAAAACTATATTGACACTTTGACCTCGAAGGCTTTGTGTTTCTTTGCGTT
GATTGTAACAGGTTCAGCCTTAAGGTGTTAAGGTGTGAAGTGGTAGTAGC
CTTAGACTAGCGACTTTGTTTATATAATTTATCGAGAAGTGAGGATTAAA
AATAAGATCCCTAAAAATATCGATACTTATCAACTCGGGATTACCAAACT
ATATTGTCTCAATTTTCAAGGCTAATTATAAACAATTAATCCTTCAGTTA
ATCCTAAACATCCATAAAGAAGAAAAAAGAAGAAATTTTTAATTATTAAA
GGATAACCAGGCAATTTTATCGGATTAAGTTTTTTCTATTGTGAAAACCC
TGACAAAATTATACCCCAAACTTTTTCCGTTTAAAGAATTTTTTTATGAT
GTACTTAATGAATTTGAATAGATCAAAAGGTACCGGCTATTCCATGACAA
ATTAAAAATTTAATTGTCGCATAGCTAATTTTTCATTGTCTATTAAAATT
ACAGTGATAATTAATTTCACTTTTTTCTTTTCACAATTTTCATTAATTAT
GCCCCTCCGCGGGCCGTCGGTGTTTTTGCGGTAACCTTTTGAAAAATTTT
CACGCCTTTTTATAAGAACTTTCACACTAGAAAGAGGGAATTTGATGAGA
AATTGGGGTAAACACTAAATTTGAGAGAAGTGACACAATCTCGAAACACA
CTTTTCTTACAATAAAGCACAATCAAACCATCCGACATATCATTTGGTCT
CTTTCAAAAAAAACCACGACGAAATCAAAAAGATACCGACAAAACCGATA
GAGCAATTCTCACCTAGCCATTTAATTACAATTGCAATTTAAAAAAGGTC
ATTTTCAAATGTTTAATTACTATTACAATTTATTTTATTCAAAAGCCAAA
TGAACTACCATCACATCCGTCCAAAGGTGAAACATGACAAAAACACCTTT
AATGACACTCAAGAATATAAAATTCATTAAAATCGTCCAAAAATAATCAA
ATCAAAAACCTATACATACTTAAAAACATTTAATAATCTTTACGTAAAGA
TTTGATCACTGATAAAAAGTTAATTTGGGATGAATTAGTGCCAATCGAAT
CTNAGAAGTGAGGATTAAAAATAAGATCCCTAAAAATATCGATACTTATC
AACTCGGGATTACCAAACTATATTGTCTCAATTTTCAAGGCTAATTATAA
ACAATTAATCCTTCAGTTAATCCTAAACATCCATAAAGAAGAAAAAAGAA
GAAATTTTTAATTATTAAAGGATAACCAGGCAATTTTATCGGATTAAGTT
TTTTCTATTGTGAAAACCCTGACAAAATTATACCCCAAACTTTTTCCGTT
TAAAGAATTTTTTTATGATGTACTTAATGAATTTGAATAGATCAAAAGGT
ACCGGCTATTCCATGACAAATTAAAAATTTAATTGTCGCATAGCTAATTT
TTCATTGTCTATTAAAATTACAGTGATAATTAATTTCACTTTTTTCTTTT
CACAATTTTCATTAATTATGCCCCTCCGCGGGCCGTCGGTGTTTTTGCGG
TAACCTTTTGAAAAATTTTCACGCCTTTTTATAAGAACTTTCACACTAGA
AAGAGGGAATTTGATGAGAAATTGGGGTAAACACTAAATTTGAGAGAAGT
GACAAAATCTCGAAACACACTTTTCTTACAATAAAGCACAATCAAACCAT
CCGACAAATCATTTGGTCTCTTTCAAAAAAACCACGACGAAATCAAAAAG
ATACCGACAAAACCGATAGAGCAATTCTCACCTAGCCATTTAATTACAAT
TGCAATTTAAAAAAGGTCATTTTCAAATGTTTAATTACTATTACAATTTA
TTTATTCAAAAGCCAAATGAACTACCATCACATCCGTCCAAAGGTGAAAC
ATGACAAAAACACCTTTAATGACACTCAAGAATATAAAATTCATTAAAAT
CGTCCAAAAATAATCAAATCAAAAACCTATACATACTTAAAAACATTTAA
TAATCTTTACGTAAAGATTTGATCACTGATAAAAAGTTAATTTGGGATGA
ATTAGTGCCAATCGAATCTTAAAGCTGGTCATTTAATAGATCCTAAAATT
ACCCCATTTTCTACTTTCGTAATAGAACTTTTGCTTCGTCATTAAGTCTA
ATAAAATAATTAAATGGTTTTAAAAACGTCATAACTTTAATTTTGAGGTC
AACAAACTCACACAGACTGTGTAAAGAGTTGATAAACATTTATAAAGTCT
GTAGGCACACTCATTAATTCTTGTTCTATTCTTCATCTTCAGGCGTATGT
TTCCTGTATTAAAGTCACGAGCCAACGGTTTAGACCCTACAGCAATGTAC
ACAGTCATGTTAGACTTTATGCCAGTAGATGACCACCGATGGAAATATGT
CAACGGGGAATGGTCACACGCAGGGAAACCAGAACCAACGGCCGCAAGTA
AAATCTACGTTCATCCAGACTCACCAAACTTCGGCGCTCATTGGATGAAA
AGTCCGATTGTATTTTCAAAAGTCAAATTAACAAATAAAGAAAACGAAAA
CGGGCAAGTGGTAAGTACGATGTGGTTTCTTTTTTCTAGGACAGATTTTT
TAAATGATTCCTTTTTTTCGGACAACACGATTTAGTCACTTAAGAATTGT
AACTAGATTCTTTCTCAAAAAGAGATTCATGTAAAGTTTAATGGACTTTC
GGTAGGTTAAAGTCTTAAACACAAAACACAAATTTTAGGATATGCCAAGC
CTTAGTTTAGATAAACCGTGTGCTTAAGAAAAAAAACGTGTTTAACGTTG
ACATTATCTAACCCTAATATTTTCTTGTCACAACAGTTGATGCTCAATTC
CCTCCACAAATACGTCCCACGAATTCACATAGTCAAAGTTGGCAATGGAG
AAAAAGTCGTATCAACGTATTCGTTTGTCGAGACAGAATTTATTGCCGTC
ACGGCGTACCAAAATGAAGAAATTACAAATTTAAAAATACGTTATAATCC
ATTCGCAAAAGCATTCCTCGACGCAAAAGAACGTAACGACCACCGTGAAT
ACGTAGAGCGACGTAACTCATTTTGTAGTTGCTGTCCGCCGTCATCACCT
TACGCACTACCGGGACACCATTTCCCGACACACCTTCCGTCACCACATTA
CATGGGCGCAACGACGTGCGGAGCCGAAAAACTTTTAATGAGGCATCACC
CGTATTCTAGACCCACATCATGTAAGTATTTTACTAACTCGAATGTCTCT
TTAATTCGAACAAGTTTTATGATCTCTTCAGTGAATGTGTTAAAATTTTC
TTAACTCGAACAAATTTTTGTGTTCCCCGTGCGGGTTCGAGTTATGGAGA
CTTCGATGTGTAAAATTCATACGAGATTGATACATGAGATATTAACAAAT
TCTGCCTTGAATTTGAAGTTAAAGATCTTAGAAATTTGACTGGGTAGTTA
ACAATATCTCTTAACTAACCAGAAAAAAATTACACAAACGATTCTGCCTT
GAAGTCATAACTGTTGCTTCAAAATACCTAAAATTTCTTTGAAATATAAC
ATTCAAATCCAATAATAACATTCATCAATTGTTCTTTTACAGATTACCCA
TCATACAATCGTTCAAGATCAACCACATTCTCCGATATCCCTTCACCAAC
CAAAAGTTCACCATTAAGTTCATCCTACCCCACAACACACTTCAAGTATG
ATGACGATATTCACCGTCATTCTATTTCTCCGCCCATATCTACCCGCCAT
TCACCGCCTACACTGATTCGCAGCGATGTATTATCTTACCAAGATCAACT
GAGAATTAAACTAGAAGCTTCAAACATTCATCATCGCTTTCATCAAAATA
ACATAAACCCTAACGGACAAATTGAACTTAGACATACAGCAATTTCTAGA
TAATTTAATTTTCAATTTTTCAGTCTCCCATACTTTGTATATACTTTTTC
TTAGAGATAATTTTTTCTTATCGTTCTTTTTTAAATTCTTCTAAAACACT
TTTTTAAACAGGTCCTCTATTGCAAAAAACCTTCATGGTAATTTTTCGGA
AAAGTGAGTTTACTTCTCAATTTTCTTACCAGTTTTGGTTGTAAATATCT
TTCTCGACTTTCTTTGAAGGAAAAGATCCCAATAGTTACCGAAGAGAGGA
TTCTACATGGCTTAAATAGATAAAAATATTATTTTTGAAGAATATTTTGA
TGACACTTGTAAATAACAAAAGGAACAAACAAAGCTTTTACAATGTAAAT
ATAATTAATTGAACAAAACGACTAATTTAAAAAAAGATGCACAAATTCAC
AAACAAACATAAACAAAGGAAATATTGNTTGTAAATATAATTAATTGAAT
AAAACGACTAATTTAAAAAAAGATGCACAAATTCACAAACAAACATAAAC
AAAGGAAATATTGTTG

Coding sequence (CDS) from alignment at sc0000757:36857..45722-

>TCONS_00029607 ID=TCONS_00029607|Name=TCONS_00029607|organism=Clytia hemisphaerica|type=CDS|length=4536bp|location=Sequence derived from alignment at sc0000757:36857..45722- (Clytia hemisphaerica)
ATTACCCATCATACAATCGTTCAAGATCAACCACATTCTCCGATATCCCT
TCACCAACCAAAAGTTCACCATTAAGTTCATCCTACCCCACAACACACTT
CAAGTATGATGACGATATTCACCGTCATTCTATTTCTCCGCCCATATCTA
CCCGCCATTCACCGCCTACACTGATTCGCAGCGATGTATTATCTTACCAA
GATCAACTGAGAATTAAACTAGAAGCTTCAAACATTCATCATCGCTTTCA
TCAAAATAACATAAACCCTAACGGACAAATTGAACTTAGACATACAGCAA
TTTCTAGATAATTGATGCTCAATTCCCTCCACAAATACGTCCCACGAATT
CACATAGTCAAAGTTGGCAATGGAGAAAAAGTCGTATCAACGTATTCGTT
TGTCGAGACAGAATTTATTGCCGTCACGGCGTACCAAAATGAAGAAATTA
CAAATTTAAAAATACGTTATAATCCATTCGCAAAAGCATTCCTCGACGCA
AAAGAACGTAACGACCACCGTGAATACGTAGAGCGACGTAACTCATTTTG
TAGTTGCTGTCCGCCGTCATCACCTTACGCACTACCGGGACACCATTTCC
CGACACACCTTCCGTCACCACATTACATGGGCGCAACGACGTGCGGAGCC
GAAAAACTTTTAATGAGGCATCACCCGTATTCTAGACCCACATCATGCGT
ATGTTTCCTGTATTAAAGTCACGAGCCAACGGTTTAGACCCTACAGCAAT
GTACACAGTCATGTTAGACTTTATGCCAGTAGATGACCACCGATGGAAAT
ATGTCAACGGGGAATGGTCACACGCAGGGAAACCAGAACCAACGGCCGCA
AGTAAAATCTACGTTCATCCAGACTCACCAAACTTCGGCGCTCATTGGAT
GAAAAGTCCGATTGTATTTTCAAAAGTCAAATTAACAAATAAAGAAAACG
AAAACGGGCAAGTGATGAAGTCCGATTTTTCAATGGCATCGATTTTGAAT
CGAAAAAGTGAAGTCGATAAAAATGAAGTGAAACTGTTAAAAGATGTTAA
TATGAGAATCGCACTTGAGGATGCTGATTTATGGCGAAGTTTCCACAGAA
TGACTAACGAGATGATTGTCACCAAAAATGGAAGATTACCCATCATACAA
TCGTTCAAGATCAACCACATTCTCCGATATCCCTTCACCAACCAAAAGTT
CACCATTAAGTTCATCCTACCCCACAACACACTTCAAGTATGATGACGAT
ATTCACCGTCATTCTATTTCTCCGCCCATATCTACCCGCCATTCACCGCC
TACACTGATTCGCAGCGATGTATTATCTTACCAAGATCAACTGAGAATTA
AACTAGAAGCTTCAAACATTCATCATCGCTTTCATCAAAATAACATAAAC
CCTAACGGACAAATTGAACTTAGACATACAGCAATTTCTAGATAATTGAT
GCTCAATTCCCTCCACAAATACGTCCCACGAATTCACATAGTCAAAGTTG
GCAATGGAGAAAAAGTCGTATCAACGTATTCGTTTGTCGAGACAGAATTT
ATTGCCGTCACGGCGTACCAAAATGAAGAAATTACAAATTTAAAAATACG
TTATAATCCATTCGCAAAAGCATTCCTCGACGCAAAAGAACGTAACGACC
ACCGTGAATACGTAGAGCGACGTAACTCATTTTGTAGTTGCTGTCCGCCG
TCATCACCTTACGCACTACCGGGACACCATTTCCCGACACACCTTCCGTC
ACCACATTACATGGGCGCAACGACGTGCGGAGCCGAAAAACTTTTAATGA
GGCATCACCCGTATTCTAGACCCACATCATGCGTATGTTTCCTGTATTAA
AGTCACGAGCCAACGGTTTAGACCCTACAGCAATGTACACAGTCATGTTA
GACTTTATGCCAGTAGATGACCACCGATGGAAATATGTCAACGGGGAATG
GTCACACGCAGGGAAACCAGAACCAACGGCCGCAAGTAAAATCTACGTTC
ATCCAGACTCACCAAACTTCGGCGCTCATTGGATGAAAAGTCCGATTGTA
TTTTCAAAAGTCAAATTAACAAATAAAGAAAACGAAAACGGGCAAGTGAT
GAAGTCCGATTTTTCAATGGCATCGATTTTGAATCGAAAAAGTGAAGTCG
ATAAAAATGAAGTGAAACTGTTAAAAGATGTTAATATGAGAATCGCACTT
GAGGATGCTGATTTATGGCGAAGTTTCCACAGAATGACTAACGAGATGAT
TGTCACCAAAAATGGAAGATTACCCATCATACAATCGTTCAAGATCAACC
ACATTCTCCGATATCCCTTCACCAACCAAAAGTTCACCATTAAGTTCATC
CTACCCCACAACACACTTCAAGTATGATGACGATATTCACCGTCATTCTA
TTTCTCCGCCCATATCTACCCGCCATTCACCGCCTACACTGATTCGCAGC
GATGTATTATCTTACCAAGATCAACTGAGAATTAAACTAGAAGCTTCAAA
CATTCATCATCGCTTTCATCAAAATAACATAAACCCTAACGGACAAATTG
AACTTAGACATACAGCAATTTCTAGATAATTGATGCTCAATTCCCTCCAC
AAATACGTCCCACGAATTCACATAGTCAAAGTTGGCAATGGAGAAAAAGT
CGTATCAACGTATTCGTTTGTCGAGACAGAATTTATTGCCGTCACGGCGT
ACCAAAATGAAGAAATTACAAATTTAAAAATACGTTATAATCCATTCGCA
AAAGCATTCCTCGACGCAAAAGAACGTAACGACCACCGTGAATACGTAGA
GCGACGTAACTCATTTTGTAGTTGCTGTCCGCCGTCATCACCTTACGCAC
TACCGGGACACCATTTCCCGACACACCTTCCGTCACCACATTACATGGGC
GCAACGACGTGCGGAGCCGAAAAACTTTTAATGAGGCATCACCCGTATTC
TAGACCCACATCATGCGTATGTTTCCTGTATTAAAGTCACGAGCCAACGG
TTTAGACCCTACAGCAATGTACACAGTCATGTTAGACTTTATGCCAGTAG
ATGACCACCGATGGAAATATGTCAACGGGGAATGGTCACACGCAGGGAAA
CCAGAACCAACGGCCGCAAGTAAAATCTACGTTCATCCAGACTCACCAAA
CTTCGGCGCTCATTGGATGAAAAGTCCGATTGTATTTTCAAAAGTCAAAT
TAACAAATAAAGAAAACGAAAACGGGCAAGTGATGAAGTCCGATTTTTCA
ATGGCATCGATTTTGAATCGAAAAAGTGAAGTCGATAAAAATGAAGTGAA
ACTGTTAAAAGATGTTAATATGAGAATCGCACTTGAGGATGCTGATTTAT
GGCGAAGTTTCCACAGAATGACTAACGAGATGATTGTCACCAAAAATGGA
AGATTACCCATCATACAATCGTTCAAGATCAACCACATTCTCCGATATCC
CTTCACCAACCAAAAGTTCACCATTAAGTTCATCCTACCCCACAACACAC
TTCAAGTATGATGACGATATTCACCGTCATTCTATTTCTCCGCCCATATC
TACCCGCCATTCACCGCCTACACTGATTCGCAGCGATGTATTATCTTACC
AAGATCAACTGAGAATTAAACTAGAAGCTTCAAACATTCATCATCGCTTT
CATCAAAATAACATAAACCCTAACGGACAAATTGAACTTAGACATACAGC
AATTTCTAGATAATTGATGCTCAATTCCCTCCACAAATACGTCCCACGAA
TTCACATAGTCAAAGTTGGCAATGGAGAAAAAGTCGTATCAACGTATTCG
TTTGTCGAGACAGAATTTATTGCCGTCACGGCGTACCAAAATGAAGAAAT
TACAAATTTAAAAATACGTTATAATCCATTCGCAAAAGCATTCCTCGACG
CAAAAGAACGTAACGACCACCGTGAATACGTAGAGCGACGTAACTCATTT
TGTAGTTGCTGTCCGCCGTCATCACCTTACGCACTACCGGGACACCATTT
CCCGACACACCTTCCGTCACCACATTACATGGGCGCAACGACGTGCGGAG
CCGAAAAACTTTTAATGAGGCATCACCCGTATTCTAGACCCACATCATGC
GTATGTTTCCTGTATTAAAGTCACGAGCCAACGGTTTAGACCCTACAGCA
ATGTACACAGTCATGTTAGACTTTATGCCAGTAGATGACCACCGATGGAA
ATATGTCAACGGGGAATGGTCACACGCAGGGAAACCAGAACCAACGGCCG
CAAGTAAAATCTACGTTCATCCAGACTCACCAAACTTCGGCGCTCATTGG
ATGAAAAGTCCGATTGTATTTTCAAAAGTCAAATTAACAAATAAAGAAAA
CGAAAACGGGCAAGTGATGAAGTCCGATTTTTCAATGGCATCGATTTTGA
ATCGAAAAAGTGAAGTCGATAAAAATGAAGTGAAACTGTTAAAAGATGTT
AATATGAGAATCGCACTTGAGGATGCTGATTTATGGCGAAGTTTCCACAG
AATGACTAACGAGATGATTGTCACCAAAAATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016911XLOC_016911Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029607-exon-sc0000757-1575043694:45355..45722TCONS_00029607-exon-sc0000757-1575043694:45355..45722Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1575043694:43872..44064TCONS_00029607-exon-sc0000757-1575043694:43872..44064Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1575043694:38713..38980TCONS_00029607-exon-sc0000757-1575043694:38713..38980Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1575043694:38052..38436TCONS_00029607-exon-sc0000757-1575043694:38052..38436Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1575043694:36857..37680TCONS_00029607-exon-sc0000757-1575043694:36857..37680Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1510915933:45355..45722TCONS_00029607-exon-sc0000757-1510915933:45355..45722Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1510915933:43872..44064TCONS_00029607-exon-sc0000757-1510915933:43872..44064Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1510915933:38713..38980TCONS_00029607-exon-sc0000757-1510915933:38713..38980Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1510915933:38052..38436TCONS_00029607-exon-sc0000757-1510915933:38052..38436Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1510915933:36857..37680TCONS_00029607-exon-sc0000757-1510915933:36857..37680Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1491911889:45355..45722TCONS_00029607-exon-sc0000757-1491911889:45355..45722Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1491911889:43872..44064TCONS_00029607-exon-sc0000757-1491911889:43872..44064Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1491911889:38713..38980TCONS_00029607-exon-sc0000757-1491911889:38713..38980Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1491911889:38052..38436TCONS_00029607-exon-sc0000757-1491911889:38052..38436Clytia hemisphaericaexon
TCONS_00029607-exon-sc0000757-1491911889:36857..37680TCONS_00029607-exon-sc0000757-1491911889:36857..37680Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
Bra2 brachyury transcription factorTCONS_00029607-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000757supercontigsc0000757:36857..45722 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0387947	0	0.0109813	0	24.8766	17.6115	26.6342	27.9347	13.7713	14.8612	5.47311	9.86329	7.14691	6.93314	1.85043	5.29545	1.57992	1.47012	12.3513	7.94039	1.24717	1.53682	1.01195	1.13232	1.30163	1.65422	0.239378	0.283857	0	0.0438704
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001699TF_T-box
IPR002070TF_Brachyury
IPR018186TF_T-box_CS
IPR008967p53-like_TF_DNA-bd
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
[Close]
BLAST of TCONS_00029607 vs. Swiss-Prot (Human)
Match: BRAC (Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1)

HSP 1 Score: 300.442 bits (768), Expect = 1.002e-93
Identity = 140/229 (61.14%), Postives = 172/229 (75.11%), Query Frame = 2 
Query:  479 MRIALEDADLWRSFHRMTNEMIVTKNGRRMFPVLKSRANGLDPTAMYTVMLDFMPVDDHRWKYVNGEWSHAGKPEPTAASKIYVHPDSPNFGAHWMKSPIVFSKVKLTNKENENGQVLMLNSLHKYVPRIHIVKVGNGEKVVSTYSFVETEFIAVTAYQNEEITNLKIRYNPFAKAFLDAKERNDHREYVERRNSFXXXXXXXXXYALPGHH--FPTHLPSPHYMGATT 1159
            +R+ LE+++LW  F  +TNEMIVTKNGRRMFPVLK   +GLDP AMY+ +LDF+  D+HRWKYVNGEW   GKPEP A S +Y+HPDSPNFGAHWMK+P+ FSKVKLTNK N  GQ+ MLNSLHKY PRIHIV+VG  +++++++ F ET+FIAVTAYQNEEIT LKI+YNPFAKAFLDAKER+DH+E +E              + LPG     P   P P + GA +
Sbjct:   42 LRVGLEESELWLRFKELTNEMIVTKNGRRMFPVLKVNVSGLDPNAMYSFLLDFVAADNHRWKYVNGEWVPGGKPEPQAPSCVYIHPDSPNFGAHWMKAPVSFSKVKLTNKLNGGGQI-MLNSLHKYEPRIHIVRVGGPQRMITSHCFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERSDHKEMMEEPGDSQQPGYSQWGWLLPGTSTLCPPANPHPQFGGALS 269
The following BLAST results are available for this feature:
BLAST of TCONS_00029607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BRAC1.002e-9361.14Brachyury protein OS=Homo sapiens GN=T PE=1 SV=1[more]
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