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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029603 ID=TCONS_00029603|Name=TCONS_00029603|organism=Clytia hemisphaerica|type=transcript|length=1006bp
CCACCCGCCCAGTGTTCTCCCCGATTAACGTCCCGTTTCTTCAAACCGGG
TTTTTGACTATTTTCGTGATAAATAGCACGGATCCTTAGCTGTGGAAGCA
CGTGGTGAAAACTTGAATTACGTCCTGAATTTCTCATTTCTAAAGGGGAG
AAGAGGACTGGATAAAGAAAGACATGGTGAAGAATTCTTGTTCTGGAAGT
AAAGCTTTACATACCGAGCtGTTATTTGATGGAAAAAATCAATCACTGAC
CATGGTTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTTCATG
GACAGGTTGGTGCATCAATGGGTGTTGAGTTgtcaaattataaaaacaat
tcGTGCGACTTAGTAGTGAAGAATCAAAGTGATTTTGTAAAACTTTGGAG
TGCTTTGACGCTATGTGGTTCGTACGAGGGTCGAAGATGTATgttcaaaa
caaaggaaataacCGCAAATAATGCTATATAACTCAACAGATTCATCGGT
GAGTGTAGAAGTATCAGGACCATTGGGTTCCACTTCGAAGGATCGGTTAC
AAAAACAACAAGATACATTATGAATCAAATTGTTTTGAGAAataagaaat
gaaaaagattggaTTTTTGTATTTGGACATTGGCTgggaagattttttaa
agcacaTGTATGGGTGCTTAATAGTGACATTGAATTTCCCAAAAGGGTTC
AATGGTAGTCGTTGACATTTCACATAATGACGTATTCAATTTGAAACAAT
TCATTTTTATTCTCATTGATTTAAACGACCTATTTTATATCACCTGTAGA
TATCAGATATcagatattttaaaaattaggaCGCACTTTCTGTTCGTTca
aagctttatttttctttaatctCCATTCACATTGCctgattttaattttg
tttagACTTGCCTGtactaatttttgttttttgttcttTGTTTACAAGGT
TAAGACAGTAGATTCTACAACTCAAATGTCCCTTAACTCAAAGAAGTGTT
CTCATC Run BLAST on NCBI protein sequence of TCONS_00029603-protein >TCONS_00029603-protein ID=TCONS_00029603-protein|Name=TCONS_00029603-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MVKNSCSGSKALHTELLFDGKNQSLTMVEFQALITGSLESLHGQVGASMG
VELSNYKNNSCDLVVKNQSDFVKLWSALTLCGSYEGRRCMFKTKEITANN
AI Run BLAST on NCBI transcript from alignment at sc0000757:99529..107092+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029603 ID=TCONS_00029603|Name=TCONS_00029603|organism=Clytia hemisphaerica|type=transcript|length=7564bp|location=Sequence derived from alignment at sc0000757:99529..107092+ (Clytia hemisphaerica)
CCACCCGCCCAGTGTTCTCCCCGATTAACGTCCCGTTTCTTCAAACCGGG
TTTTTGACTATTTTCGTGATAAATAGCACGGATCCTTAGCTGTGGAAGCA
CGTGGTGAAAACTTGAATTACGTCCTGAATTTCTCATTTCTAAAGGGGAG
AAGAGGACTGGATAAAGAAAGACATGGTGAAGAATTCTTGTTCTGGAAGT
AAAGCTTTACATACCGAGCtgtaagtttttttaatttttcacttATTTGG
TTGCCAGTGCACTGCTCTAAAcatcaatgtttagaaaaaggggttacACG
CGCTCCAGAACGCTTAAGNGATGAGTAAGCAAACTCACTCTTatccaaaa
acaaaacctttaactcatcaatgtttagaaaaaggggttacgcgcgctcc
agaacgcttaagtacgttcctccactctgtttgcgttGCAAATACTACTG
AGGTAATCCAGGATAATCATGACGATCGGCGAAAAATTTAGGGCTATTGA
AATTACGTTAttttattggttgaaactcactagcatGTTACATTTTGGTC
GTTTTCGTGATTATGCCGATTTGCTAGTTAACCTCACAAGTATTTAGAGT
GTAGAGTCTTGAGAAGCGAAAAGAACTAGGAAACACTAGGAAAGGTGAAA
ACAACAGCTTTTTAATTGGATATTCTTTTTGCGGGTAATCTGTTAGGCAA
AACTAGAGTGCCTTTTCTGGGTAAATAtatcgggggaaagtgacgaaaat
tataAGAATTAAGGCGACGACATTTTTCCCccagttgaaaaaacttttac
tacctgGTCTTTTATCCCCGGCCAAAAATTTTGCAACAGCCTCAGGATCT
ATAAAGtccaaaatatctgaaaaacacATTGGCCAaagggaatgtaaaaa
gaaattccaaaataccaaaattctaaaaatttgaaaaaatcccgaaaata
aatttaaaagaaatcccttttaccaacctcgttccctcctgcgtattatc
agcttttttatgctttactGATAGCGCCCTTTTACTTCCGCcttgtagtt
tcgaatgtttttattcgaaaatctaattcgaacgttataGATTCGAACGA
AAATATTCGATTTTAGTGACTGCATTTTTTGACTATGACATGACAAAATA
GAGAAGCATTTTTCGATCCCAGAAGTTTTGTTTCGCAGTgagcagatttt
tcagagatgtatttgaaagtttctagattgataattgaaaatgcagatga
tgtacagtattatttcgatagagaagaaacaacccttcatcattggatta
atcaggtTGAAAGCACtgagtctttttctatgtttttgtttcgatatgca
tggaaaagaaaagcagaGGAAAAAGGAGTTCCATGATTGAAACGTATGCG
ATGGTTGTAATGGTTCGATGGTTAAAAaagacaacatttttgaaacagta
aaacaatgtgaataatttcttgattatcgtcagaCGTACCTTTGTCGTTT
GTCGCAAACGAGAGACttgggagagaacttttataaatatCGCTTGTCAT
ATGGTTTTtaaatacaagacattacattCAGTTACATTTCCCTTATTATG
TTATCAGAAATCTCGTATcatattggcaaacattcaagaatatcaaattt
tttgtaTGCAGTGAAGTGATGAAAAACTGTTTGGCATCACACGGACAATA
CAATACCTAAAGCTGGAAATATTTGGATcatgtcaagtagttttataaat
ttcttagttcatcagatttgattttagtgtattttatggaagaactccaa
attaaaagttcaactgaaaatatttttgttgcgttttcccCCTTTCCCTT
GTCTTTGACAATTCCCTACTCCGAAAGTTATCTTTTCGactgtttttgat
ttgatttttctcagATAGGCCTGTCTGTTGTTGTTGAGTActgtatgaag
attttaacttgaatatgaaactctttaccttgaaattttgtcttCACAAT
TAAACCACAGTAATGTCTATAGTTAAaaccaagaaccaacaaacaaacTG
TTTCTTACTCTTATTAAGTTCTTAGTAGGGGGAGGGCTAATTGTtggagg
ggttggaaattttaattctaaaaacccaaaaataagctaAAATCTTGCTt
tatagagcaaaataaggagccTTCCTTCCCTCtgtcagctgaaaatattt
ttacaaattaataaacgatggggggtcctaataaggtccgggggctNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcctaataaggtccgggggttggaa
GATTTTCGTTTTGGAGCAATCtcattatttaaaatataaagcactgagga
tccttcacttgcgatcggagtgatttgaggatttaaaaattgatacgaaa
attgatgtcatgtagtcatacacgaagtctgaattttgaaagtggttgag
cgatatataggaacttagtcgaccgcgcgcacattataccaAAGGAGACG
CGCTGCGCGCGTAATAACTTGGAACTGTTCTGTTGGTCGAAACAtgatgg
gactgttgatatctggcctgtattttcactaatgttaaatttctttgaca
acaaatttgttttgataaatccaccaagtttatcaatcatactttctgtc
ataacatgtcacaataactttcactgatatcTAGTGCGCcctttttagct
tttttgttttcattcaaaaaatgaaCGGACGCCAATTAATTGGAGAATTT
GAGAACACCCGTctgcctatcgcccgatgggattaacaaaaaTAATGAGT
CTTTAACTTGCCGTTTGAGTGACGTCAAACACTCAATTGTTTTGCTACTA
AtcaccagacgatctcaatcgacgATTGAAcaagtcaaaccaaatcgaac
gcaatcaaccgattgaaaatcgattgtcgaacgcaattaaatctcaatcg
aatattaccgcaattttcagatttgattgatattcgatagaccttttttc
aaagaggccaccctgttgaataattatgtagtccagcggaaaaacaatga
aaaaaccatgcataattattacaatatgcatgatacagtaattatgcatg
gctctatcattgtttttatggctggactacataattattcaacaagacgt
tctctttgaaaaaaggtctattgcgttcgattgatgttcgattgcgttcg
attgtgttcgatcgtcgattcattgacccccggattgttcatcgcataat
ttttacaggaaatcgaaagtaatttcattcggcttgtgatgtttgagagc
ttggatgttggaaagctgcaagaataaagccagacgatctcaatcgaacg
gaatcaacgatcaaaccagtcgaacaacaattgaaccaatcgaatattac
ccagaattttgacgttcgatttggtttgactggttcgatcgtcgattccg
ttcgattgagatcgtctggtaatCAGCACTtaatatggtcttcttcgttc
tAGACATTcccgtgtgttccactacagatttttttcatatcgatttaaaa
gcctactcggtgagaaagagaaattgtgtatttttttatatgtcgttcat
taactcaaatcaattgactttggaggttcggtgaaatggtggctgaattg
ccatCTCATGTTTTGtatcagatagtcccaagttagaggtttggcagacg
atatcatccaccaggatgcaagtgaaatttttcaatctgcggacctAGAT
GGGGGCTCGGTTattcatagctgtcaactctcccgcattgaGCGAGAGAC
TCCCGCATGTCAACGATTTCTCCCGCGTGaagaattttctgattttggaa
aaaccaaacggcaaaatttctggattttgaaagatcggaacgaaaaattc
cccaatttcctgaaaaaaatttccaataaaatcggattttacgagaaaat
ttccccgatttcccgattttccgattttgaaaaatcggattatcggggaa
aatctttccgacttggagctctcccgcatttttgtgaGGCGAAGTTTACA
GCTATGGGTTATTATCAGAcatatcagttagggttagggttggagctcga
gagtcacaatataaggccgaaggccttcttaggggcatccgTACCCTGTG
ACCTAACTTAGGATCCCATAGGGATctttgtaggggcaccggtagggtct
agagctttcttaataaaggtctgtaaattacacgctataagtatttgtga
atgacagctttCTGTGGTGTCTCGTTGACGcaagcggttaggcattgggt
ttgtaaaccaaggttgcttgtaGTATTTGGTGGTTTGTGCCGGGGCTGGA
GACCCatttcaccggtacgggcaaattttcagaaaaatacttagaaaaca
gttagaaacactagagaaagtcagaaaatcaggatagaagataggaaaat
agaaaataggggaaaaataagagaggatgcatcctggtggatgatatcgt
ttgccaaccaagttagagcagttgccGGTAGTGtgtatatttatgttttt
tcatCTCAAATTATACTTTAAAGGGGAGAAATTTGCGCGAAgttaaaaag
tcacaaaatttaGTGAAGTTAAGCTTTGCAAATTATAGTTTTAGCCAAAA
TTTCACAGATAGAACTTTTGtgaattcataaaaaatttaccttttttggt
aacaaaaactcataaaacaccgaaaacacgcaaaaatttagcaaacagtg
cgtgagtaggaaagtttattttttgcaaaaaaaactttcgtgtttttagg
tttaatttcttacctggcagaaactttcgcgaagcaggattaaaattgaa
aaaaatgccaAAGTTTCTGCCTGCGCGAGAAAATTTCTGCCCACGAAAGT
AATGGAATGGCAACTCCGTGTCTGTCTGGATCACTGGACGCGTGACGATG
ATTGGAGTAGAAGCTTCGAACTCAAAAGTAGTGCCATGGAGGGGGTTCTA
AAAATTTCTGTTCCATAGGTATTGCCCAGGTCTAAATTGTGATTTGCTct
tagaaaaaagggaaattcaggGAAAGTCTACCTAGAAAATGTCGATATGT
TCTTCATAAGGTAAACATCAATCAAGGGTCACATCGCTCTCAACTCTCTT
TCACATTGAGCGCGCCTGAGCGCGCAGCAGGAGACTTCCCCGTAGTTGTT
TAGGAGAATGTGACGGTCTAAATTGAATAACAAATCACTCCACATACATT
TTCCCTCAGCCAGTACTCAAACATTCTCCAAAACAACCATTCTAACTAGT
TTTCCcacataaaaaaatttcccccaAATTTCCTGCATTTCCAGGATTTT
CTCATGGAAAATCGGGAGGAAAATTTCCTTTATAAAAATTTCAGATAAAT
ACTGTAAGACTTCACAGAAAATTTTTcctgatttcccgatttttccgatt
ttgaaatATTGGATAATCATggaacattttttaactttgagcCCTCTTGC
ACTTTTGTGAGGCAAAGTTGACAACTATTGGGTCATGTTCAGGTCATATT
CCAGCCAAAAATAGCAAATAGTGTGTAAGAAAATCCTAGAAAATGTAAAA
CAATGCTGGGTGAGGTTTTTTTACGTCATTAGCATTTCCTGAAACAagac
tatttttctttttggcctAACATCTATTATTAATTACTCAGGTTATGGAA
ATCCTTTTTTATTTAGGTTATTTGATGGAAAAAATCAATCACTGACCATG
GTTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTTCATGGACA
GGTATTGCAGTTATTTTCCAATTCAGGAATACATTACAGAGTGCCTAGAA
AAGTGCAACATAGTTTTTATAAAGTAAAATGCCAAAACTGTTTAATATAA
ACTGAAATTGAAATAAACCTTTTGCTAGACTCTATGTCATGTTGGatgat
taaaaactccagcacaTAACAATGGTGAGAAAAAAATTAGTGTTTACTTA
TGATAATTATTCATTAATGTGTCATCCTTCTTGTGCTGGAGTTTTTTATT
ATCTTACATGACATCGCTTCTAGTAAAAGGTCTATTGTTAGAATTTGTAG
GAAGTTTGTATATATACTGATGTAGTTTTGATCAGTCAGGGTCAGCTTTT
CTAGAAATAATTTAGGAAAATTCCTTCACAATAGTAATGTTCCAAACTGA
TTAAAAAATGGTAATTATAATAGCATGATTCTGTAGTtgtttttcactta
aaaaaggCTGAGAGgtataataattaattttagttATTCCCACGTTGATG
TATAactatttttttgatttacttttttacatatttttatgCAGTGTTTT
GTACTTCGTTTTCATTCAGGTTGGTGCATCAATGGGTGTTGAGTTgtcaa
attataaaaacaattcGTGCGACTTAGTAGTGAAGAATCAAAGGTATTAT
gaattaccgtattacttcgaataaacgtccAAGAATTTTAGGAGGctcgt
ttaaaagaagggggcgtttattaaataatcttAAAGCTAGGGACGGAAAA
ATCGAGTGATCTCATAATGATACAAGTGCTTTCTGTTGGGGTCATATAGT
AGCCAATAATCTATATTCATAAGACCTTTTAGTTTGAAGCCAAATATCTG
TCTTATTACCGTTATAGatgacaaaaatttactggttcaaAGTTTGAGGA
TGCTCATTTTATTAGGAATTATTGACTAGAAATGAAAGTTCCAGTCTGCT
ATAAATAAGCATCTGGCTTAAGCTGAGTTTAATAATATGACATCAANTAT
TGACTAGAAGTGAAAGTTCCAGTCTGCTATAAACAAACATCTGGCTACAG
CTGATTTTAATAATATGACATCAATTCTGCCCTTCAGTGATTTTGTAAAA
CTTTGGAGTGCTTTGACGCTATGTGGTTCGTACGAGGGTCGAAGATGTAT
gttcaaaacaaaggaaataacCGCAAATAATGCTATATAACTCAACAGAT
TCATCGGTGAGTGTAGAAGTATCAGGACCATTGGGTTCCACTTCGAAGGA
TCGGTTACAAAAACAACAAGATACATTATGAATCAAATTGTTTTGAGAAa
taagaaatgaaaaagattggaTTTTTGTATTTGGACATTGGCTgggaaga
ttttttaaagcacaTGTATGGGTGCTTAATAGTGACATTGAATTTCCCAA
AAGGGTTCAATGGTAGTCGTTGACATTTCACATAATGACGTATTCAATTT
GAAACAATTCATTTTTATTCTCATTGATTTAAACGACCTATTTTATATCA
CCTGTAGATATCAGATATcagatattttaaaaattaggaCGCACTTTCTG
TTCGTTcaaagctttatttttctttaatctCCATTCACATTGCctgattt
taattttgtttagACTTGCCTGtactaatttttgttttttgttcttTGTT
TACAAGGTTAAGACAGTAGATTCTACAACTCAAATGTCCCTTAACTCAAA
GAAGTGTTCTCATC Coding sequence (CDS) from alignment at sc0000757:99529..107092+ >TCONS_00029603 ID=TCONS_00029603|Name=TCONS_00029603|organism=Clytia hemisphaerica|type=CDS|length=1236bp|location=Sequence derived from alignment at sc0000757:99529..107092+ (Clytia hemisphaerica)
ATGGTGAAGAATTCTTGTTCTGGAAGTAAAGCTTTACATACCGAGCtGTT
ATTTGATGGAAAAAATCAATCACTGACCATGGTTGAGTTTCAAGCATTGA
TTACTGGCTCGTTAGAATCTCTTCATGGACAGGTTGGTGCATCAATGGGT
GTTGAGTTgtcaaattataaaaacaattcGTGCGACTTAGTAGTGAAGAA
TCAAAGTGATTTTGTAAAACTTTGGAGTGCTTTGACGCTATGTGGTTCGT
ACGAGGGTCGAAGATGTATgttcaaaacaaaggaaataacCGCAAATAAT
GCTATATAAATGGTGAAGAATTCTTGTTCTGGAAGTAAAGCTTTACATAC
CGAGCtGTTATTTGATGGAAAAAATCAATCACTGACCATGGTTGAGTTTC
AAGCATTGATTACTGGCTCGTTAGAATCTCTTCATGGACAGGTTGGTGCA
TCAATGGGTGTTGAGTTgtcaaattataaaaacaattcGTGCGACTTAGT
AGTGAAGAATCAAAGTGATTTTGTAAAACTTTGGAGTGCTTTGACGCTAT
GTGGTTCGTACGAGGGTCGAAGATGTATgttcaaaacaaaggaaataacC
GCAAATAATGCTATATAAATGGTGAAGAATTCTTGTTCTGGAAGTAAAGC
TTTACATACCGAGCtGTTATTTGATGGAAAAAATCAATCACTGACCATGG
TTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTTCATGGACAG
GTTGGTGCATCAATGGGTGTTGAGTTgtcaaattataaaaacaattcGTG
CGACTTAGTAGTGAAGAATCAAAGTGATTTTGTAAAACTTTGGAGTGCTT
TGACGCTATGTGGTTCGTACGAGGGTCGAAGATGTATgttcaaaacaaag
gaaataacCGCAAATAATGCTATATAAATGGTGAAGAATTCTTGTTCTGG
AAGTAAAGCTTTACATACCGAGCtGTTATTTGATGGAAAAAATCAATCAC
TGACCATGGTTGAGTTTCAAGCATTGATTACTGGCTCGTTAGAATCTCTT
CATGGACAGGTTGGTGCATCAATGGGTGTTGAGTTgtcaaattataaaaa
caattcGTGCGACTTAGTAGTGAAGAATCAAAGTGATTTTGTAAAACTTT
GGAGTGCTTTGACGCTATGTGGTTCGTACGAGGGTCGAAGATGTATgttc
aaaacaaaggaaataacCGCAAATAATGCTATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029603-exon-sc0000757-1491911889:99529..99748 | TCONS_00029603-exon-sc0000757-1491911889:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1510915933:99529..99748 | TCONS_00029603-exon-sc0000757-1510915933:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1575043694:99529..99748 | TCONS_00029603-exon-sc0000757-1575043694:99529..99748 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1491911889:105295..105379 | TCONS_00029603-exon-sc0000757-1491911889:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1510915933:105295..105379 | TCONS_00029603-exon-sc0000757-1510915933:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1575043694:105295..105379 | TCONS_00029603-exon-sc0000757-1575043694:105295..105379 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1491911889:105948..106021 | TCONS_00029603-exon-sc0000757-1491911889:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1510915933:105948..106021 | TCONS_00029603-exon-sc0000757-1510915933:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1575043694:105948..106021 | TCONS_00029603-exon-sc0000757-1575043694:105948..106021 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1491911889:106466..107092 | TCONS_00029603-exon-sc0000757-1491911889:106466..107092 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1510915933:106466..107092 | TCONS_00029603-exon-sc0000757-1510915933:106466..107092 | Clytia hemisphaerica | exon |
| TCONS_00029603-exon-sc0000757-1575043694:106466..107092 | TCONS_00029603-exon-sc0000757-1575043694:106466..107092 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000757 | supercontig | sc0000757:99529..107092 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002759 | RNase_P/MRP_subunit |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008033 | tRNA processing |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004540 | ribonuclease activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0008033 |
tRNA processing |
| molecular_function |
GO:0004540 |
ribonuclease activity |
Blast
The following BLAST results are available for this feature:
|
