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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029593 ID=TCONS_00029593|Name=TCONS_00029593|organism=Clytia hemisphaerica|type=transcript|length=1964bp
GATTTCTCCTATATCCGCTGGATCTGTGATAAGCTTAccatttttaaaaa
cagagGTTGGTGTAAGAGACCTTTTTTTTCTATGGAGGATCAAGTTGACA
GCATTCCAGTGGCGCTTGATATTGCctttattattttcaaagaagttttt
aaaatatagGTACTTACTTCTACGAATTTCATGATTTATTTTGTTTCTGA
GTATTCTGATGGTTTTCTTGTGTTCAGGGTTCCTACTTTTTGAATATTTG
TACGAGTTAATGTGATTGGTTTTAATCATAGAAATAATCCTTCCATCTAT
CCAGGGTTTTAGGTCATAGTCGTTCTTAggttttatttcttttagaGGAG
CATATTTGTCGAtcaccaaagtcaatttttcatgtAGCAGGTTGTATTTT
GCATTGGCGGAGTTGCAGTTAAGTAGTTTTGGTAGAATGTTCATATTTTC
TAGGTCATGTTTTATCAAGACAGAATTATACTTTGAGAAGTCTCTTCGTA
GAATAGTTTGGCCATTGTGGTCAGCTGTTTTCAGATTTAAACGTAAAAAA
TTAGGCAGATGGTCAGTTATAGGGCATAGCAGATTACCACTGCAATCGAT
GCTATCAAAgtcactgaaaaaaatattgtcaatGAGAGTATATTTGTTAT
TGTCGTTTAGTCTTGTTGGTCCAATGATACTAGGCATCATTAGGTTTTCG
AGCATGAGGTTTAGGAAGTTTTCTGTATTTTGATGTTTGGTACTGTTCAG
AAGGTCGATGTTAAAATCACCCATAACTGCTAGCttcttattttgttttg
agactTTCTTGATTGACTTGATGAGATGATTTTGGAATTCAGTAAAATCT
CCCCTTGGATGCCTGTATAATGTACACACAACTAAGTTTTCAGATTTTAG
AAAAAGTTCAGTAAAAAATAATTGGAATTCTTCCTTATCTGAAGAAAATG
AACAATTTAGATCATCTCTCACCTTGTATCTGATGCTGTCTTTTACAAAG
ATGCCACAACCAGAGTTTTGAGTCTTTCCCCCAAGATGTTGAAGATCGTG
GTAGCCAGGAAGAGTGTATGTTCTTTCATATTTGCTGCTTTCAGGTTCCC
ATAACTCGCTCAATCCAATGATATCAAAACACCCTGTGATCTTATTAAGG
CAAGAAAGTTCATCAATGTGTTTGTTTATGGATCTAATATTTGTGTGAAG
CAGAGTCAACTTACCATTATTTGATTGGTTTTGGAGAGTCTTCAAAAGTT
TGTTGAGGTTATAGTAAGCAAAGTTCACATTTATCTCATCTTGTTCCTCA
GACATGTTTATATTGTTGAGAAAAAGGTTAGGTGTATTTTTAATGTAGTA
ATCATATTCGTCAGTATGAgttaattgttttatttcaTATGTGATTGAAA
GTGAATTAAAAGTTTGAGTAATGAGATCTTTATCGTTTAGTTCTTGGAAT
GGAAAAGAATTACAGTAGTTACATGACCAGGTTTTGTTTAATTTGTTTAC
TTCGTTACGTTTTAAGTTTAAGCATGATTGATGATATGAATGTTTACCAA
GTGTACAGAAGATTTCTCTCTGGTTAGATCTTATGGTTTTGCTGCAGGAA
AAGCATTTTAGAGTTTTTAAGTTAGGTTTTTTAATTGAGATTATGTCAGA
AAAGACCTTATTAGTTATAGTGGTAAATGGTAATATGGAAGAAGTACATA
TGCTGCAGAAATATGGAAGAGGAGACTCACTGTGTGACTTGAAAGTTTTG
GCAGTCATTTTAATACATGATTTATGAATCCAAGTGTTGCAGAGTTCACA
AAAAATACACTGGGTTAAGGCAGTTTTTTTGCACACATAACATATGATGT
TTTCAATCATTTGAGGCGTATCAAACATTAGTGAGGTTTAGAAAGAgcaa
tttaaaatgaaaagataaaaagtAGAAATGAAGACTAAAAGTACTGAAAT
AGACATGAAATAGA Run BLAST on NCBI protein sequence of TCONS_00029593-protein >TCONS_00029593-protein ID=TCONS_00029593-protein|Name=TCONS_00029593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=626bp
MFDTPQMIENIICYVCKKTALTQCIFCELCNTWIHKSCIKMTAKTFKSHS
ESPLPYFCSICTSSILPFTTITNKVFSDIISIKKPNLKTLKCFSCSKTIR
SNQREIFCTLGKHSYHQSCLNLKRNEVNKLNKTWSCNYCNSFPFQELNDK
DLITQTFNSLSITYEIKQLTHTDEYDYYIKNTPNLFLNNINMSEEQDEIN
VNFAYYNLNKLLKTLQNQSNNGKLTLLHTNIRSINKHIDELSCLNKITGC
FDIIGLSELWEPESSKYERTYTLPGYHDLQHLGGKTQNSGCGIFVKDSIR
YKVRDDLNCSFSSDKEEFQLFFTELFLKSENLVVCTLYRHPRGDFTEFQN
HLIKSIKKVSKQNKKLAVMGDFNIDLLNSTKHQNTENFLNLMLENLMMPS
IIGPTRLNDNNKYTLIDNIFFSDFDSIDCSGNLLCPITDHLPNFLRLNLK
TADHNGQTILRRDFSKYNSVLIKHDLENMNILPKLLNCNSANAKYNLLHE
KLTLVIDKYAPLKEIKPKNDYDLKPWIDGRIISMIKTNHINSYKYSKSRN
PEHKKTIRILRNKINHEIRRSKYLYFKNFFENNKGNIKRHWNAVNLILHR
KKRSLTPTSVFKNGKLITDPADIGEI Run BLAST on NCBI transcript from alignment at sc0000756:141638..143601 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029593 ID=TCONS_00029593|Name=TCONS_00029593|organism=Clytia hemisphaerica|type=transcript|length=1964bp|location=Sequence derived from alignment at sc0000756:141638..143601 (Clytia hemisphaerica)
TCTATTTCATGTCTATTTCAGTACTTTTAGTCTTCATTTCTactttttat
cttttcattttaaattgcTCTTTCTAAACCTCACTAATGTTTGATACGCC
TCAAATGATTGAAAACATCATATGTTATGTGTGCAAAAAAACTGCCTTAA
CCCAGTGTATTTTTTGTGAACTCTGCAACACTTGGATTCATAAATCATGT
ATTAAAATGACTGCCAAAACTTTCAAGTCACACAGTGAGTCTCCTCTTCC
ATATTTCTGCAGCATATGTACTTCTTCCATATTACCATTTACCACTATAA
CTAATAAGGTCTTTTCTGACATAATCTCAATTAAAAAACCTAACTTAAAA
ACTCTAAAATGCTTTTCCTGCAGCAAAACCATAAGATCTAACCAGAGAGA
AATCTTCTGTACACTTGGTAAACATTCATATCATCAATCATGCTTAAACT
TAAAACGTAACGAAGTAAACAAATTAAACAAAACCTGGTCATGTAACTAC
TGTAATTCTTTTCCATTCCAAGAACTAAACGATAAAGATCTCATTACTCA
AACTTTTAATTCACTTTCAATCACATAtgaaataaaacaattaacTCATA
CTGACGAATATGATTACTACATTAAAAATACACCTAACCTTTTTCTCAAC
AATATAAACATGTCTGAGGAACAAGATGAGATAAATGTGAACTTTGCTTA
CTATAACCTCAACAAACTTTTGAAGACTCTCCAAAACCAATCAAATAATG
GTAAGTTGACTCTGCTTCACACAAATATTAGATCCATAAACAAACACATT
GATGAACTTTCTTGCCTTAATAAGATCACAGGGTGTTTTGATATCATTGG
ATTGAGCGAGTTATGGGAACCTGAAAGCAGCAAATATGAAAGAACATACA
CTCTTCCTGGCTACCACGATCTTCAACATCTTGGGGGAAAGACTCAAAAC
TCTGGTTGTGGCATCTTTGTAAAAGACAGCATCAGATACAAGGTGAGAGA
TGATCTAAATTGTTCATTTTCTTCAGATAAGGAAGAATTCCAATTATTTT
TTACTGAACTTTTTCTAAAATCTGAAAACTTAGTTGTGTGTACATTATAC
AGGCATCCAAGGGGAGATTTTACTGAATTCCAAAATCATCTCATCAAGTC
AATCAAGAAagtctcaaaacaaaataagaaGCTAGCAGTTATGGGTGATT
TTAACATCGACCTTCTGAACAGTACCAAACATCAAAATACAGAAAACTTC
CTAAACCTCATGCTCGAAAACCTAATGATGCCTAGTATCATTGGACCAAC
AAGACTAAACGACAATAACAAATATACTCTCattgacaatatttttttca
gtgacTTTGATAGCATCGATTGCAGTGGTAATCTGCTATGCCCTATAACT
GACCATCTGCCTAATTTTTTACGTTTAAATCTGAAAACAGCTGACCACAA
TGGCCAAACTATTCTACGAAGAGACTTCTCAAAGTATAATTCTGTCTTGA
TAAAACATGACCTAGAAAATATGAACATTCTACCAAAACTACTTAACTGC
AACTCCGCCAATGCAAAATACAACCTGCTacatgaaaaattgactttggt
gaTCGACAAATATGCTCCtctaaaagaaataaaaccTAAGAACGACTATG
ACCTAAAACCCTGGATAGATGGAAGGATTATTTCTATGATTAAAACCAAT
CACATTAACTCGTACAAATATTCAAAAAGTAGGAACCCTGAACACAAGAA
AACCATCAGAATACTCAGAAACAAAATAAATCATGAAATTCGTAGAAGTA
AGTACctatattttaaaaacttctttgaaaataataaagGCAATATCAAG
CGCCACTGGAATGCTGTCAACTTGATCCTCCATAGAAAAAAAAGGTCTCT
TACACCAACctctgtttttaaaaatggTAAGCTTATCACAGATCCAGCGG
ATATAGGAGAAATC Coding sequence (CDS) from alignment at sc0000756:141638..143601 >TCONS_00029593 ID=TCONS_00029593|Name=TCONS_00029593|organism=Clytia hemisphaerica|type=CDS|length=1878bp|location=Sequence derived from alignment at sc0000756:141638..143601 (Clytia hemisphaerica)
ATGTTTGATACGCCTCAAATGATTGAAAACATCATATGTTATGTGTGCAA
AAAAACTGCCTTAACCCAGTGTATTTTTTGTGAACTCTGCAACACTTGGA
TTCATAAATCATGTATTAAAATGACTGCCAAAACTTTCAAGTCACACAGT
GAGTCTCCTCTTCCATATTTCTGCAGCATATGTACTTCTTCCATATTACC
ATTTACCACTATAACTAATAAGGTCTTTTCTGACATAATCTCAATTAAAA
AACCTAACTTAAAAACTCTAAAATGCTTTTCCTGCAGCAAAACCATAAGA
TCTAACCAGAGAGAAATCTTCTGTACACTTGGTAAACATTCATATCATCA
ATCATGCTTAAACTTAAAACGTAACGAAGTAAACAAATTAAACAAAACCT
GGTCATGTAACTACTGTAATTCTTTTCCATTCCAAGAACTAAACGATAAA
GATCTCATTACTCAAACTTTTAATTCACTTTCAATCACATAtgaaataaa
acaattaacTCATACTGACGAATATGATTACTACATTAAAAATACACCTA
ACCTTTTTCTCAACAATATAAACATGTCTGAGGAACAAGATGAGATAAAT
GTGAACTTTGCTTACTATAACCTCAACAAACTTTTGAAGACTCTCCAAAA
CCAATCAAATAATGGTAAGTTGACTCTGCTTCACACAAATATTAGATCCA
TAAACAAACACATTGATGAACTTTCTTGCCTTAATAAGATCACAGGGTGT
TTTGATATCATTGGATTGAGCGAGTTATGGGAACCTGAAAGCAGCAAATA
TGAAAGAACATACACTCTTCCTGGCTACCACGATCTTCAACATCTTGGGG
GAAAGACTCAAAACTCTGGTTGTGGCATCTTTGTAAAAGACAGCATCAGA
TACAAGGTGAGAGATGATCTAAATTGTTCATTTTCTTCAGATAAGGAAGA
ATTCCAATTATTTTTTACTGAACTTTTTCTAAAATCTGAAAACTTAGTTG
TGTGTACATTATACAGGCATCCAAGGGGAGATTTTACTGAATTCCAAAAT
CATCTCATCAAGTCAATCAAGAAagtctcaaaacaaaataagaaGCTAGC
AGTTATGGGTGATTTTAACATCGACCTTCTGAACAGTACCAAACATCAAA
ATACAGAAAACTTCCTAAACCTCATGCTCGAAAACCTAATGATGCCTAGT
ATCATTGGACCAACAAGACTAAACGACAATAACAAATATACTCTCattga
caatatttttttcagtgacTTTGATAGCATCGATTGCAGTGGTAATCTGC
TATGCCCTATAACTGACCATCTGCCTAATTTTTTACGTTTAAATCTGAAA
ACAGCTGACCACAATGGCCAAACTATTCTACGAAGAGACTTCTCAAAGTA
TAATTCTGTCTTGATAAAACATGACCTAGAAAATATGAACATTCTACCAA
AACTACTTAACTGCAACTCCGCCAATGCAAAATACAACCTGCTacatgaa
aaattgactttggtgaTCGACAAATATGCTCCtctaaaagaaataaaacc
TAAGAACGACTATGACCTAAAACCCTGGATAGATGGAAGGATTATTTCTA
TGATTAAAACCAATCACATTAACTCGTACAAATATTCAAAAAGTAGGAAC
CCTGAACACAAGAAAACCATCAGAATACTCAGAAACAAAATAAATCATGA
AATTCGTAGAAGTAAGTACctatattttaaaaacttctttgaaaataata
aagGCAATATCAAGCGCCACTGGAATGCTGTCAACTTGATCCTCCATAGA
AAAAAAAGGTCTCTTACACCAACctctgtttttaaaaatggTAAGCTTAT
CACAGATCCAGCGGATATAGGAGAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029593-exon-sc0000756-1491911889:141638..143601 | TCONS_00029593-exon-sc0000756-1491911889:141638..143601 | Clytia hemisphaerica | exon |
| TCONS_00029593-exon-sc0000756-1510915933:141638..143601 | TCONS_00029593-exon-sc0000756-1510915933:141638..143601 | Clytia hemisphaerica | exon |
| TCONS_00029593-exon-sc0000756-1575043694:141638..143601 | TCONS_00029593-exon-sc0000756-1575043694:141638..143601 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000756 | supercontig | sc0000756:141638..143601 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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