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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029592 ID=TCONS_00029592|Name=TCONS_00029592|organism=Clytia hemisphaerica|type=transcript|length=1648bp
ACCAGCGGTCCGTCCCCATTAATCTATATTCCCTCTAATTTAAACAGGTT
GGAAGTGAATGTCGTTTAATAATTTCACTATTTGGTCAACCTTTTATTAT
GACTATgatcaataaattttaaaaacaatagtCTCTTGCAATAACTCATC
TTTCGAGTAGAATATTTGAAACGATTCAATTGAGAAAACGATTGTTCCGC
CACTTCGGTGTTCATGTCAATGACCTTTTGGAATTTATCGAGATAAGGGT
GGTATAAGCAATCCTCGTTAGCGATATTACATTTGGATTCGGTGTGTTTA
CCGACATGAAAGATATCTACTATAAAGTCCAATTCTTTATAAATAGATGC
TGCAGGGTTACCTTCGTTGCTCAAACGATTTAGAAATGGATGTAACCCAC
ATGCCCGATCATAAACTATTCCATTTAAATTTTCCCCCTTTTCACCGAAT
GTGCCAATCAGGTACATGAAAACATCAGACATCAACTCTGATGAGTACAT
TTCATAATGACCAACATGTACACCACATGAACGAAATATGTAGAACATGC
CAGCTGTTCGGTCGTGAAAACGATCAATGTTTTCCTCCTTTTTACAACTT
TCCTCCACTTCGACGATTTTAGGGAGCGATTTTGCATGCTGGCGAGTCAT
CGGTCTCAAATCTATTTGCTCGTCTGTATTACCAGTTTTGTCTTTACAAT
GCACTTCACAATATTTGGACTTATCTTGGAGCTGATTTCCTCTTATTGGA
TTACGTATACAGGCTTCGACGTGGTTTGGCTGACCAATATTACCTGTAAC
TCTGACTCTAGGCGCAGCACAAATTAATCGATGAAGTTTCTCGTTCCCAT
CTAACACTACGAATCTTTCACGGCAGCCTGGTTCCGTGCAGCAATGTTTC
TTCCAAATAGAATATATTTTAGTTCTTATCTCGTCAAATACAGATTTGCA
CAATAGTTCAATGTCTAGCTCTCTAGATTTCTCTTTTCTTGGCCagtatt
cgaatgtttttctgaaTTCCAAAATCCGATATAAATACCAGGCATTTTCC
AGTCGATCAGGATTCAATTGGGAGGGCATTCCAGCTGTGGCGTATATTAT
ATCCGCCGCTTTCTCAAATGAAATACCGCCGATGCATATCATGTTGTCCA
CTAAATTCAATAACTCCTTTGTAAATGCTATCCCAGAAATAAATAGCAGA
ATGTCTCTATCTAGGTCATCAAAAGTACGCGATAGGTTTCCTTTCCTCTC
TACGTATCCGTAGTATGCCAATTTTCCACACACAGAACATTTTCCGTGGT
AAGATTTACCATCCAATATAGCTTTGGACGAATATACCTTGATCCCTGCA
AATGATGttataattttcaatttctttccaCAACAAAATAGTACATCTGG
TATGAATATCAACGGAATATTTAAGCGATTCTTTGTAATATCTTTCATGC
GAGGTAGATCTCCTTCAATCCGAGATAAATTTTCGACATTTAACACAAAT
GGTGTGGTCTGAAAGTATGAATGTTCACCTTTAATGTCAATAAGGACTTC
CCTGTCGCAACACGATTCTCCACAAGTGATTTCCGATGCAATGTCACGAA
TCAATTCCAATCTCTTCGGCGTGTGCATAGGTATTGCTTTGTACaaat Run BLAST on NCBI protein sequence of TCONS_00029592-protein >TCONS_00029592-protein ID=TCONS_00029592-protein|Name=TCONS_00029592-protein|organism=Clytia hemisphaerica|type=polypeptide|length=522bp
LYKAIPMHTPKRLELIRDIASEITCGESCCDREVLIDIKGEHSYFQTTPF
VLNVENLSRIEGDLPRMKDITKNRLNIPLIFIPDVLFCCGKKLKIITSFA
GIKVYSSKAILDGKSYHGKCSVCGKLAYYGYVERKGNLSRTFDDLDRDIL
LFISGIAFTKELLNLVDNMICIGGISFEKAADIIYATAGMPSQLNPDRLE
NAWYLYRILEFRKTFEYWPRKEKSRELDIELLCKSVFDEIRTKIYSIWKK
HCCTEPGCRERFVVLDGNEKLHRLICAAPRVRVTGNIGQPNHVEACIRNP
IRGNQLQDKSKYCEVHCKDKTGNTDEQIDLRPMTRQHAKSLPKIVEVEES
CKKEENIDRFHDRTAGMFYIFRSCGVHVGHYEMYSSELMSDVFMYLIGTF
GEKGENLNGIVYDRACGLHPFLNRLSNEGNPAASIYKELDFIVDIFHVGK
HTESKCNIANEDCLYHPYLDKFQKVIDMNTEVAEQSFSQLNRFKYSTRKM
SYCKRLLFLKFIDHSHNKRLTK Run BLAST on NCBI transcript from alignment at sc0000756:136141..137788 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029592 ID=TCONS_00029592|Name=TCONS_00029592|organism=Clytia hemisphaerica|type=transcript|length=1648bp|location=Sequence derived from alignment at sc0000756:136141..137788 (Clytia hemisphaerica)
atttGTACAAAGCAATACCTATGCACACGCCGAAGAGATTGGAATTGATT
CGTGACATTGCATCGGAAATCACTTGTGGAGAATCGTGTTGCGACAGGGA
AGTCCTTATTGACATTAAAGGTGAACATTCATACTTTCAGACCACACCAT
TTGTGTTAAATGTCGAAAATTTATCTCGGATTGAAGGAGATCTACCTCGC
ATGAAAGATATTACAAAGAATCGCTTAAATATTCCGTTGATATTCATACC
AGATGTACTATTTTGTTGtggaaagaaattgaaaattataaCATCATTTG
CAGGGATCAAGGTATATTCGTCCAAAGCTATATTGGATGGTAAATCTTAC
CACGGAAAATGTTCTGTGTGTGGAAAATTGGCATACTACGGATACGTAGA
GAGGAAAGGAAACCTATCGCGTACTTTTGATGACCTAGATAGAGACATTC
TGCTATTTATTTCTGGGATAGCATTTACAAAGGAGTTATTGAATTTAGTG
GACAACATGATATGCATCGGCGGTATTTCATTTGAGAAAGCGGCGGATAT
AATATACGCCACAGCTGGAATGCCCTCCCAATTGAATCCTGATCGACTGG
AAAATGCCTGGTATTTATATCGGATTTTGGAAttcagaaaaacattcgaa
tactGGCCAAGAAAAGAGAAATCTAGAGAGCTAGACATTGAACTATTGTG
CAAATCTGTATTTGACGAGATAAGAACTAAAATATATTCTATTTGGAAGA
AACATTGCTGCACGGAACCAGGCTGCCGTGAAAGATTCGTAGTGTTAGAT
GGGAACGAGAAACTTCATCGATTAATTTGTGCTGCGCCTAGAGTCAGAGT
TACAGGTAATATTGGTCAGCCAAACCACGTCGAAGCCTGTATACGTAATC
CAATAAGAGGAAATCAGCTCCAAGATAAGTCCAAATATTGTGAAGTGCAT
TGTAAAGACAAAACTGGTAATACAGACGAGCAAATAGATTTGAGACCGAT
GACTCGCCAGCATGCAAAATCGCTCCCTAAAATCGTCGAAGTGGAGGAAA
GTTGTAAAAAGGAGGAAAACATTGATCGTTTTCACGACCGAACAGCTGGC
ATGTTCTACATATTTCGTTCATGTGGTGTACATGTTGGTCATTATGAAAT
GTACTCATCAGAGTTGATGTCTGATGTTTTCATGTACCTGATTGGCACAT
TCGGTGAAAAGGGGGAAAATTTAAATGGAATAGTTTATGATCGGGCATGT
GGGTTACATCCATTTCTAAATCGTTTGAGCAACGAAGGTAACCCTGCAGC
ATCTATTTATAAAGAATTGGACTTTATAGTAGATATCTTTCATGTCGGTA
AACACACCGAATCCAAATGTAATATCGCTAACGAGGATTGCTTATACCAC
CCTTATCTCGATAAATTCCAAAAGGTCATTGACATGAACACCGAAGTGGC
GGAACAATCGTTTTCTCAATTGAATCGTTTCAAATATTCTACTCGAAAGA
TGAGTTATTGCAAGAGactattgtttttaaaatttattgatcATAGTCAT
AATAAAAGGTTGACCAAATAGTGAAATTATTAAACGACATTCACTTCCAA
CCTGTTTAAATTAGAGGGAATATAGATTAATGGGGACGGACCGCTGGT Coding sequence (CDS) from alignment at sc0000756:136141..137788 >TCONS_00029592 ID=TCONS_00029592|Name=TCONS_00029592|organism=Clytia hemisphaerica|type=CDS|length=1569bp|location=Sequence derived from alignment at sc0000756:136141..137788 (Clytia hemisphaerica)
ttGTACAAAGCAATACCTATGCACACGCCGAAGAGATTGGAATTGATTCG
TGACATTGCATCGGAAATCACTTGTGGAGAATCGTGTTGCGACAGGGAAG
TCCTTATTGACATTAAAGGTGAACATTCATACTTTCAGACCACACCATTT
GTGTTAAATGTCGAAAATTTATCTCGGATTGAAGGAGATCTACCTCGCAT
GAAAGATATTACAAAGAATCGCTTAAATATTCCGTTGATATTCATACCAG
ATGTACTATTTTGTTGtggaaagaaattgaaaattataaCATCATTTGCA
GGGATCAAGGTATATTCGTCCAAAGCTATATTGGATGGTAAATCTTACCA
CGGAAAATGTTCTGTGTGTGGAAAATTGGCATACTACGGATACGTAGAGA
GGAAAGGAAACCTATCGCGTACTTTTGATGACCTAGATAGAGACATTCTG
CTATTTATTTCTGGGATAGCATTTACAAAGGAGTTATTGAATTTAGTGGA
CAACATGATATGCATCGGCGGTATTTCATTTGAGAAAGCGGCGGATATAA
TATACGCCACAGCTGGAATGCCCTCCCAATTGAATCCTGATCGACTGGAA
AATGCCTGGTATTTATATCGGATTTTGGAAttcagaaaaacattcgaata
ctGGCCAAGAAAAGAGAAATCTAGAGAGCTAGACATTGAACTATTGTGCA
AATCTGTATTTGACGAGATAAGAACTAAAATATATTCTATTTGGAAGAAA
CATTGCTGCACGGAACCAGGCTGCCGTGAAAGATTCGTAGTGTTAGATGG
GAACGAGAAACTTCATCGATTAATTTGTGCTGCGCCTAGAGTCAGAGTTA
CAGGTAATATTGGTCAGCCAAACCACGTCGAAGCCTGTATACGTAATCCA
ATAAGAGGAAATCAGCTCCAAGATAAGTCCAAATATTGTGAAGTGCATTG
TAAAGACAAAACTGGTAATACAGACGAGCAAATAGATTTGAGACCGATGA
CTCGCCAGCATGCAAAATCGCTCCCTAAAATCGTCGAAGTGGAGGAAAGT
TGTAAAAAGGAGGAAAACATTGATCGTTTTCACGACCGAACAGCTGGCAT
GTTCTACATATTTCGTTCATGTGGTGTACATGTTGGTCATTATGAAATGT
ACTCATCAGAGTTGATGTCTGATGTTTTCATGTACCTGATTGGCACATTC
GGTGAAAAGGGGGAAAATTTAAATGGAATAGTTTATGATCGGGCATGTGG
GTTACATCCATTTCTAAATCGTTTGAGCAACGAAGGTAACCCTGCAGCAT
CTATTTATAAAGAATTGGACTTTATAGTAGATATCTTTCATGTCGGTAAA
CACACCGAATCCAAATGTAATATCGCTAACGAGGATTGCTTATACCACCC
TTATCTCGATAAATTCCAAAAGGTCATTGACATGAACACCGAAGTGGCGG
AACAATCGTTTTCTCAATTGAATCGTTTCAAATATTCTACTCGAAAGATG
AGTTATTGCAAGAGactattgtttttaaaatttattgatcATAGTCATAA
TAAAAGGTTGACCAAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029592-exon-sc0000756-1491911889:136141..137788 | TCONS_00029592-exon-sc0000756-1491911889:136141..137788 | Clytia hemisphaerica | exon |
| TCONS_00029592-exon-sc0000756-1510915933:136141..137788 | TCONS_00029592-exon-sc0000756-1510915933:136141..137788 | Clytia hemisphaerica | exon |
| TCONS_00029592-exon-sc0000756-1575043694:136141..137788 | TCONS_00029592-exon-sc0000756-1575043694:136141..137788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000756 | supercontig | sc0000756:136141..137788 . |
Blast
The following BLAST results are available for this feature:
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