TCONS_00029583 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029583
Unique NameTCONS_00029583
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029583 ID=TCONS_00029583|Name=TCONS_00029583|organism=Clytia hemisphaerica|type=transcript|length=418bp
CTGGCAGTGCTAGGTACCGTGGTAGAGGAGGAGGCGGAAGAGGAGGAAGA
GGGGGTAACAGAGGTGGATTTAACCAAGGTGGTGGAAGTCAACAGGCTGG
ATCGATTAGCAAGGGTGGTAACATGTCAATGAATGTTGCGCCAAGCAACC
CTGCTGGAAGAGATACAGACAGTATCAAGAAAGTGGTCAATTTCATCCAA
CTTTTAGCCAAAGCCAAAAATATCGGAAGTGTGATCGAACAAAACACCTC
TATTTATTGGCGAGCCTTCAAAATGTACAAGCAGTTAAAGATTCACCAGA
TTGAGACGTTAATTACCACAATGGCAAAACTGAGAGTGACCTTCGAGTTT
GAAGAACCTCCAATGGCTTTGCATTGTAAAGAAATTGTCGACATATATGT
CGAACATCacgcaaaaac
Run BLAST on NCBI

protein sequence of TCONS_00029583-protein

>TCONS_00029583-protein ID=TCONS_00029583-protein|Name=TCONS_00029583-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
GSARYRGRGGGGRGGRGGNRGGFNQGGGSQQAGSISKGGNMSMNVAPSNP
AGRDTDSIKKVVNFIQLLAKAKNIGSVIEQNTSIYWRAFKMYKQLKIHQI
ETLITTMAKLRVTFEFEEPPMALHCKEIVDIYVEHHAK
Run BLAST on NCBI

transcript from alignment at sc0000756:56547..56964

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029583 ID=TCONS_00029583|Name=TCONS_00029583|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0000756:56547..56964 (Clytia hemisphaerica)
gtttttgcgtGATGTTCGACATATATGTCGACAATTTCTTTACAATGCAA
AGCCATTGGAGGTTCTTCAAACTCGAAGGTCACTCTCAGTTTTGCCATTG
TGGTAATTAACGTCTCAATCTGGTGAATCTTTAACTGCTTGTACATTTTG
AAGGCTCGCCAATAAATAGAGGTGTTTTGTTCGATCACACTTCCGATATT
TTTGGCTTTGGCTAAAAGTTGGATGAAATTGACCACTTTCTTGATACTGT
CTGTATCTCTTCCAGCAGGGTTGCTTGGCGCAACATTCATTGACATGTTA
CCACCCTTGCTAATCGATCCAGCCTGTTGACTTCCACCACCTTGGTTAAA
TCCACCTCTGTTACCCCCTCTTCCTCCTCTTCCGCCTCCTCCTCTACCAC
GGTACCTAGCACTGCCAG

Coding sequence (CDS) from alignment at sc0000756:56547..56964

>TCONS_00029583 ID=TCONS_00029583|Name=TCONS_00029583|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at sc0000756:56547..56964 (Clytia hemisphaerica)
ttttgcgtGATGTTCGACATATATGTCGACAATTTCTTTACAATGCAAAG
CCATTGGAGGTTCTTCAAACTCGAAGGTCACTCTCAGTTTTGCCATTGTG
GTAATTAACGTCTCAATCTGGTGAATCTTTAACTGCTTGTACATTTTGAA
GGCTCGCCAATAAATAGAGGTGTTTTGTTCGATCACACTTCCGATATTTT
TGGCTTTGGCTAAAAGTTGGATGAAATTGACCACTTTCTTGATACTGTCT
GTATCTCTTCCAGCAGGGTTGCTTGGCGCAACATTCATTGACATGTTACC
ACCCTTGCTAATCGATCCAGCCTGTTGACTTCCACCACCTTGGTTAAATC
CACCTCTGTTACCCCCTCTTCCTCCTCTTCCGCCTCCTCCTCTACCACGG
TACCTAGCACTGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016895XLOC_016895Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029583-proteinTCONS_00029583-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029583-exon-sc0000756-1491911889:56547..56964TCONS_00029583-exon-sc0000756-1491911889:56547..56964Clytia hemisphaericaexon
TCONS_00029583-exon-sc0000756-1510915933:56547..56964TCONS_00029583-exon-sc0000756-1510915933:56547..56964Clytia hemisphaericaexon
TCONS_00029583-exon-sc0000756-1575043694:56547..56964TCONS_00029583-exon-sc0000756-1575043694:56547..56964Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000756supercontigsc0000756:56547..56964 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.331066	0	0	0	0.180894	0	0	0	0	0	0	0.564477	0.703458	0	0	0	0	1.44358	1.51061	0.164124	0.240162	0.389264	0.353897	0	0.813282	0	0.496817	0.188409	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029583 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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