TCONS_00029572 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029572
Unique NameTCONS_00029572
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length751

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029572 ID=TCONS_00029572|Name=TCONS_00029572|organism=Clytia hemisphaerica|type=transcript|length=751bp
NNaagttttcttggaaaatgtcaTCCGTGATGCTGTCACTTACACCGAGC
ACGCCAAAAGGAAGACTGTCACTGCCATGGACGTCGTCTACGCTTTGAAA
CGACAAGGACGTACTCTTTACGGATTcggaggttaagaagtttgactTGG
ACTCAACAAAACGGCTATTTTTATAGCCACACATCtcataaaaaacaaat
cttacttTGTATATCTCAAGCTTTGAATTTTAATTCATAGCATACCCTGA
CCCTTTCCCTATCTACCCctccaagcaaaaaaattataacccttccaaaa
atctaagaattgAAATTTCCCTAGCCATAACATAAcaaattttttctcag
aaaaattaTCTGACgttattcaaaaacttttcgaaaattatttgaCGTTA
AACAGAATTTTCTCCATAACTTTTCAATAGTCAGAGAAATTTCTCATGAA
TTTGTAGTCCACAATATTTGACGTTAGATTTTTTCCAGCCAAAAATAAGT
TCAATCCTTTCCtcagaaagaaattatttgacgttaaacttttttcatga
aaattttcaaactcaaactcAGGCAGGGAGATAAAAATATAGACAAGTAT
AGGTTGTTTTTTAAGAGATTTGTGGTCTTAAAAAAGACCGTTTTGGGGTT
CCAACAAGGGGTAATCTATTTGCTGCTGGTGTATTTGGTGACGGCTTTGG
TTCCTTCTGAGACGGCGTGCTTGGCCAACTCTCCTGGAAGCAAGAGACGN
N
Run BLAST on NCBI

transcript from alignment at sc0000754:150917..151667

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029572 ID=TCONS_00029572|Name=TCONS_00029572|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0000754:150917..151667 (Clytia hemisphaerica)
NNCGTCTCTTGCTTCCAGGAGAGTTGGCCAAGCACGCCGTCTCAGAAGGA
ACCAAAGCCGTCACCAAATACACCAGCAGCAAATAGATTACCCCTTGTTG
GAACCCCAAAACGGTCTTTTTTAAGACCACAAATCTCTTAAAAAACAACC
TATACTTGTCTATATTTTTATCTCCCTGCCTgagtttgagtttgaaaatt
ttcatgaaaaaagtttaacgtcaaataatttctttctgaGGAAAGGATTG
AACTTATTTTTGGCTGGAAAAAATCTAACGTCAAATATTGTGGACTACAA
ATTCATGAGAAATTTCTCTGACTATTGAAAAGTTATGGAGAAAATTCTGT
TTAACGtcaaataattttcgaaaagtttttgaataacGTCAGAtaatttt
tctgagaaaaaatttgTTATGTTATGGCTAGGGAAATTTcaattcttaga
tttttggaagggttataatttttttgcttggagGGGTAGATAGGGAAAGG
GTCAGGGTATGCTATGAATTAAAATTCAAAGCTTGAGATATACAaagtaa
gatttgttttttatgaGATGTGTGGCTATAAAAATAGCCGTTTTGTTGAG
TCCAagtcaaacttcttaacctccgAATCCGTAAAGAGTACGTCCTTGTC
GTTTCAAAGCGTAGACGACGTCCATGGCAGTGACAGTCTTCCTTTTGGCG
TGCTCGGTGTAAGTGACAGCATCACGGAtgacattttccaagaaaacttN
N
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016886XLOC_016886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029572-exon-sc0000754-1491911889:150917..151667TCONS_00029572-exon-sc0000754-1491911889:150917..151667Clytia hemisphaericaexon
TCONS_00029572-exon-sc0000754-1510915933:150917..151667TCONS_00029572-exon-sc0000754-1510915933:150917..151667Clytia hemisphaericaexon
TCONS_00029572-exon-sc0000754-1575043694:150917..151667TCONS_00029572-exon-sc0000754-1575043694:150917..151667Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000754supercontigsc0000754:150917..151667 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.696227	0.446817	0.518797	0.725089	1.41236	1.04631	0.504933	0.709068	0.386116	0.819886	0.132634	0.305158	0	0.0904198	0.0371687	0	0.245692	0.0503653	0.0695823	0.145626	0	0	0.0750518	0	0.210835	0.313609	0.0897547	0	0.0726523	0
Blast
[Close]
BLAST of TCONS_00029572 vs. Swiss-Prot (Human)
Match: H4 (Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.980e-22
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 2 
Query:    5 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 133
            VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   61 VFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 103
The following BLAST results are available for this feature:
BLAST of TCONS_00029572 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
H43.980e-22100.00Histone H4 OS=Homo sapiens GN=HIST1H4A PE=1 SV=2[more]
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