TCONS_00029570 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029570
Unique NameTCONS_00029570
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029570 ID=TCONS_00029570|Name=TCONS_00029570|organism=Clytia hemisphaerica|type=transcript|length=582bp
CTCGAATCGGGTGTTGTTTGTTCTTCAGTCGGTTGTGTAACCGACTGTTC
CACAGGGACGTTCATCAGTTCCGCCATTCTAGTCGCTACTTTTCGcattg
aaatttgttttggGTTGTGTTCACTTTCCTCTCTGAGGGCAGTGATGTAG
TAAAATACGTCGTCGTTGGCGACATTTTCCCGTTTTATGTCAGAGAGTTT
GAATCGATTTGTAATTATGGCATCCCCAATTTGAATTTGTCTTGGGGGTG
CAGTTTTTAGTGTTCCAAAAATTACAACTCGATTGCCATTGCGGTATGCC
AGACCCCCTTTAGTTTTTCTTACCCCATATACGTGGGCCACTTCGCCAAA
GTTAGAATAATACAATTTCAGCTCATCGTCAGTGATGTATTCAGGGACAG
ATATGGATGTAATTCTAAAAGTCAGTCTGTTGTCCCCTCTGAATCTTAGT
ACTGTGTCAATGTTGTCGGTCTTGAAGACGAGACCGTCTTCAAGTAGTCT
TTTCCTGGGGGTTTCATCGCAGTAAACGAGCTTAACCAATTTCCCCTTTA
CCTCTAGACATTTAAGGTATTTTTCAGCTACG
Run BLAST on NCBI

protein sequence of TCONS_00029570-protein

>TCONS_00029570-protein ID=TCONS_00029570-protein|Name=TCONS_00029570-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
VAEKYLKCLEVKGKLVKLVYCDETPRKRLLEDGLVFKTDNIDTVLRFRGD
NRLTFRITSISVPEYITDDELKLYYSNFGEVAHVYGVRKTKGGLAYRNGN
RVVIFGTLKTAPPRQIQIGDAIITNRFKLSDIKRENVANDDVFYYITALR
EESEHNPKQISMRKVATRMAELMNVPVEQSVTQPTEEQTTPDS
Run BLAST on NCBI

transcript from alignment at sc0000754:143030..143611

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029570 ID=TCONS_00029570|Name=TCONS_00029570|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at sc0000754:143030..143611 (Clytia hemisphaerica)
CGTAGCTGAAAAATACCTTAAATGTCTAGAGGTAAAGGGGAAATTGGTTA
AGCTCGTTTACTGCGATGAAACCCCCAGGAAAAGACTACTTGAAGACGGT
CTCGTCTTCAAGACCGACAACATTGACACAGTACTAAGATTCAGAGGGGA
CAACAGACTGACTTTTAGAATTACATCCATATCTGTCCCTGAATACATCA
CTGACGATGAGCTGAAATTGTATTATTCTAACTTTGGCGAAGTGGCCCAC
GTATATGGGGTAAGAAAAACTAAAGGGGGTCTGGCATACCGCAATGGCAA
TCGAGTTGTAATTTTTGGAACACTAAAAACTGCACCCCCAAGACAAATTC
AAATTGGGGATGCCATAATTACAAATCGATTCAAACTCTCTGACATAAAA
CGGGAAAATGTCGCCAACGACGACGTATTTTACTACATCACTGCCCTCAG
AGAGGAAAGTGAACACAACccaaaacaaatttcaatgCGAAAAGTAGCGA
CTAGAATGGCGGAACTGATGAACGTCCCTGTGGAACAGTCGGTTACACAA
CCGACTGAAGAACAAACAACACCCGATTCGAG

Coding sequence (CDS) from alignment at sc0000754:143030..143611

>TCONS_00029570 ID=TCONS_00029570|Name=TCONS_00029570|organism=Clytia hemisphaerica|type=CDS|length=579bp|location=Sequence derived from alignment at sc0000754:143030..143611 (Clytia hemisphaerica)
GTAGCTGAAAAATACCTTAAATGTCTAGAGGTAAAGGGGAAATTGGTTAA
GCTCGTTTACTGCGATGAAACCCCCAGGAAAAGACTACTTGAAGACGGTC
TCGTCTTCAAGACCGACAACATTGACACAGTACTAAGATTCAGAGGGGAC
AACAGACTGACTTTTAGAATTACATCCATATCTGTCCCTGAATACATCAC
TGACGATGAGCTGAAATTGTATTATTCTAACTTTGGCGAAGTGGCCCACG
TATATGGGGTAAGAAAAACTAAAGGGGGTCTGGCATACCGCAATGGCAAT
CGAGTTGTAATTTTTGGAACACTAAAAACTGCACCCCCAAGACAAATTCA
AATTGGGGATGCCATAATTACAAATCGATTCAAACTCTCTGACATAAAAC
GGGAAAATGTCGCCAACGACGACGTATTTTACTACATCACTGCCCTCAGA
GAGGAAAGTGAACACAACccaaaacaaatttcaatgCGAAAAGTAGCGAC
TAGAATGGCGGAACTGATGAACGTCCCTGTGGAACAGTCGGTTACACAAC
CGACTGAAGAACAAACAACACCCGATTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016884XLOC_016884Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029570-proteinTCONS_00029570-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029570-exon-sc0000754-1491911889:143030..143611TCONS_00029570-exon-sc0000754-1491911889:143030..143611Clytia hemisphaericaexon
TCONS_00029570-exon-sc0000754-1510915933:143030..143611TCONS_00029570-exon-sc0000754-1510915933:143030..143611Clytia hemisphaericaexon
TCONS_00029570-exon-sc0000754-1575043694:143030..143611TCONS_00029570-exon-sc0000754-1575043694:143030..143611Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000754supercontigsc0000754:143030..143611 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0951146	0	0.107694	0	0.384802	0.506793	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.134568	0	0.0991482	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029570 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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