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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029563 ID=TCONS_00029563|Name=TCONS_00029563|organism=Clytia hemisphaerica|type=transcript|length=1450bp
CATAGATCATTGTGTATCTAGGTGTTGAGGGTCTGGTTTTAAACATGCCT
CTCAACAACCTAGATACCTGTTCATTTGCCCGAAATGTTTTCCCTTCAAT
TTTGGGAAAAACTGCTGATAAAGCCGATCTTGCCACAGCTACTACTCCAT
AATTTGAATTTTTCTTTATAAACAACTCCACAAGAAAATTGATACCGTCC
TTGTATGTTGGTTTCCTTTGGTCAATCTTGTTTCTTTCACAATATGAAGA
CCACTTTTTGAGATAGGAGTTGTAGCTTGATCTTGTCTTCTGTGCCCAAG
ATGATTCGATTAGTCGTGTTGCCTCTTCTCCTAGGTCTTCCTTCATAATT
GCTTCCCGGAGACAACTGCTGCCACTATGCTCAGGTTCTTGTGTAGCGGG
TGGGTGATGTCTTTCTGCGGCAGCACCAGTAGGTCCTTCCTAGGAGAGAA
ATCAACTCTTTCAATTATCATGTCCAGGAATGTTGAGTACCATGGTTGGT
TGGGCCAGTCAGGTACCACTAGTATGCCTGTTGCCTCATCATGGAATATT
TTCTGTATTACCATTGGGATGCATGAAAATGGGGGGAATGCATAAAAGTT
TAGGTCGCCCCAATCTACTGTAAAGGCGTCTACACCGATACAGTTTGGGT
CTGGCCGAAAGGAGAAAAATCTTGTTATCTGGCAATTAATTCTACTAGCA
AAAAGATCAACGTTTGGCACAAAATCAAGGACTGATACCATATTATTAAa
ggcatctctattgagcatccaCTCTGTCCTAGTTTCAGTCTTCCTAGACT
CTTCATCAGCCTCTACATTTAGAATACCCGGAATATGTGTAGCGGTGAGC
CATGATTCCCTTTCTATGGCCCAGTTCCATACGGAGTGAACAATCTCATC
CATCAAAGTGGATCTAATGCTACCCATTTTATTTATCGCAGATACTGCAG
AGGTGTTATCAATTTTCAGTAAAATGTGTGTGTCTCGAATGTTGAGACAC
AATGCCTGTAAACCAAAGTTTACTGCTTTAAGCTCAAGGATATTGATATG
TAAATCTTTTTCAAACTCAGTAAAATGGCCTCCCGTAGAAGTCTCAAATA
CTGCACCCCAGCCAGTTTTTGAGGCATCTGAGGTCATTTCCAGCTTGGGG
TTATCTCTTAGAATGGGAGCCCAGCTACCAACTATGTTATCTTTCCACCA
CATAATGTCTTGTTGTGCCTCATGTGATAGGGAGATCTTCTTGTCAAAAT
TGCCTTTGTTGATTTTTAGGGCTTCAGTTTTAAGCCGCTCTAGGGCACGG
TAATGTAACCTCCCAAATGGAACTGCCATAAAACTACTGGAAAATTTTCC
TAAAATTTTAAACAAGGTTCTAATTGGCACACTTTGCATTGCCAAAACTT
CAGAGCATAGTTTTTTGATAGCTACCTCTTTTTCCTGGGTTAGCCTCAAG Run BLAST on NCBI protein sequence of TCONS_00029563-protein >TCONS_00029563-protein ID=TCONS_00029563-protein|Name=TCONS_00029563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=368bp
LRLTQEKEVAIKKLCSEVLAMQSVPIRTLFKILGKFSSSFMAVPFGRLHY
RALERLKTEALKINKGNFDKKISLSHEAQQDIMWWKDNIVGSWAPILRDN
PKLEMTSDASKTGWGAVFETSTGGHFTEFEKDLHINILELKAVNFGLQAL
CLNIRDTHILLKIDNTSAVSAINKMGSIRSTLMDEIVHSVWNWAIERESW
LTATHIPGILNVEADEESRKTETRTEWMLNRDAFNNMVSVLDFVPNVDLF
ASRINCQITRFFSFRPDPNCIGVDAFTVDWGDLNFYAFPPFSCIPMVIQK
IFHDEATGILVVPDWPNQPWYSTFLDMIIERVDFSPRKDLLVLPQKDITH
PLHKNLSIVAAVVSGKQL Run BLAST on NCBI transcript from alignment at sc0000754:2475..3924 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029563 ID=TCONS_00029563|Name=TCONS_00029563|organism=Clytia hemisphaerica|type=transcript|length=1450bp|location=Sequence derived from alignment at sc0000754:2475..3924 (Clytia hemisphaerica)
CTTGAGGCTAACCCAGGAAAAAGAGGTAGCTATCAAAAAACTATGCTCTG
AAGTTTTGGCAATGCAAAGTGTGCCAATTAGAACCTTGTTTAAAATTTTA
GGAAAATTTTCCAGTAGTTTTATGGCAGTTCCATTTGGGAGGTTACATTA
CCGTGCCCTAGAGCGGCTTAAAACTGAAGCCCTAAAAATCAACAAAGGCA
ATTTTGACAAGAAGATCTCCCTATCACATGAGGCACAACAAGACATTATG
TGGTGGAAAGATAACATAGTTGGTAGCTGGGCTCCCATTCTAAGAGATAA
CCCCAAGCTGGAAATGACCTCAGATGCCTCAAAAACTGGCTGGGGTGCAG
TATTTGAGACTTCTACGGGAGGCCATTTTACTGAGTTTGAAAAAGATTTA
CATATCAATATCCTTGAGCTTAAAGCAGTAAACTTTGGTTTACAGGCATT
GTGTCTCAACATTCGAGACACACACATTTTACTGAAAATTGATAACACCT
CTGCAGTATCTGCGATAAATAAAATGGGTAGCATTAGATCCACTTTGATG
GATGAGATTGTTCACTCCGTATGGAACTGGGCCATAGAAAGGGAATCATG
GCTCACCGCTACACATATTCCGGGTATTCTAAATGTAGAGGCTGATGAAG
AGTCTAGGAAGACTGAAACTAGGACAGAGtggatgctcaatagagatgcc
tTTAATAATATGGTATCAGTCCTTGATTTTGTGCCAAACGTTGATCTTTT
TGCTAGTAGAATTAATTGCCAGATAACAAGATTTTTCTCCTTTCGGCCAG
ACCCAAACTGTATCGGTGTAGACGCCTTTACAGTAGATTGGGGCGACCTA
AACTTTTATGCATTCCCCCCATTTTCATGCATCCCAATGGTAATACAGAA
AATATTCCATGATGAGGCAACAGGCATACTAGTGGTACCTGACTGGCCCA
ACCAACCATGGTACTCAACATTCCTGGACATGATAATTGAAAGAGTTGAT
TTCTCTCCTAGGAAGGACCTACTGGTGCTGCCGCAGAAAGACATCACCCA
CCCGCTACACAAGAACCTGAGCATAGTGGCAGCAGTTGTCTCCGGGAAGC
AATTATGAAGGAAGACCTAGGAGAAGAGGCAACACGACTAATCGAATCAT
CTTGGGCACAGAAGACAAGATCAAGCTACAACTCCTATCTCAAAAAGTGG
TCTTCATATTGTGAAAGAAACAAGATTGACCAAAGGAAACCAACATACAA
GGACGGTATCAATTTTCTTGTGGAGTTGTTTATAAAGAAAAATTCAAATT
ATGGAGTAGTAGCTGTGGCAAGATCGGCTTTATCAGCAGTTTTTCCCAAA
ATTGAAGGGAAAACATTTCGGGCAAATGAACAGGTATCTAGGTTGTTGAG
AGGCATGTTTAAAACCAGACCCTCAACACCTAGATACACAATGATCTATG
Coding sequence (CDS) from alignment at sc0000754:2475..3924 >TCONS_00029563 ID=TCONS_00029563|Name=TCONS_00029563|organism=Clytia hemisphaerica|type=CDS|length=1107bp|location=Sequence derived from alignment at sc0000754:2475..3924 (Clytia hemisphaerica)
TTGAGGCTAACCCAGGAAAAAGAGGTAGCTATCAAAAAACTATGCTCTGA
AGTTTTGGCAATGCAAAGTGTGCCAATTAGAACCTTGTTTAAAATTTTAG
GAAAATTTTCCAGTAGTTTTATGGCAGTTCCATTTGGGAGGTTACATTAC
CGTGCCCTAGAGCGGCTTAAAACTGAAGCCCTAAAAATCAACAAAGGCAA
TTTTGACAAGAAGATCTCCCTATCACATGAGGCACAACAAGACATTATGT
GGTGGAAAGATAACATAGTTGGTAGCTGGGCTCCCATTCTAAGAGATAAC
CCCAAGCTGGAAATGACCTCAGATGCCTCAAAAACTGGCTGGGGTGCAGT
ATTTGAGACTTCTACGGGAGGCCATTTTACTGAGTTTGAAAAAGATTTAC
ATATCAATATCCTTGAGCTTAAAGCAGTAAACTTTGGTTTACAGGCATTG
TGTCTCAACATTCGAGACACACACATTTTACTGAAAATTGATAACACCTC
TGCAGTATCTGCGATAAATAAAATGGGTAGCATTAGATCCACTTTGATGG
ATGAGATTGTTCACTCCGTATGGAACTGGGCCATAGAAAGGGAATCATGG
CTCACCGCTACACATATTCCGGGTATTCTAAATGTAGAGGCTGATGAAGA
GTCTAGGAAGACTGAAACTAGGACAGAGtggatgctcaatagagatgcct
TTAATAATATGGTATCAGTCCTTGATTTTGTGCCAAACGTTGATCTTTTT
GCTAGTAGAATTAATTGCCAGATAACAAGATTTTTCTCCTTTCGGCCAGA
CCCAAACTGTATCGGTGTAGACGCCTTTACAGTAGATTGGGGCGACCTAA
ACTTTTATGCATTCCCCCCATTTTCATGCATCCCAATGGTAATACAGAAA
ATATTCCATGATGAGGCAACAGGCATACTAGTGGTACCTGACTGGCCCAA
CCAACCATGGTACTCAACATTCCTGGACATGATAATTGAAAGAGTTGATT
TCTCTCCTAGGAAGGACCTACTGGTGCTGCCGCAGAAAGACATCACCCAC
CCGCTACACAAGAACCTGAGCATAGTGGCAGCAGTTGTCTCCGGGAAGCA
ATTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029563-exon-sc0000754-1491911889:2475..3924 | TCONS_00029563-exon-sc0000754-1491911889:2475..3924 | Clytia hemisphaerica | exon |
| TCONS_00029563-exon-sc0000754-1510915933:2475..3924 | TCONS_00029563-exon-sc0000754-1510915933:2475..3924 | Clytia hemisphaerica | exon |
| TCONS_00029563-exon-sc0000754-1575043694:2475..3924 | TCONS_00029563-exon-sc0000754-1575043694:2475..3924 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000754 | supercontig | sc0000754:2475..3924 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR012337 | RNaseH-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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