TCONS_00029558 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029558
Unique NameTCONS_00029558
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length916

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029558 ID=TCONS_00029558|Name=TCONS_00029558|organism=Clytia hemisphaerica|type=transcript|length=916bp
CAGAGAAGAGTATTTATTGGATGAGggAGTGTTGATTGACCAGCGTTGAA
AATGCAGCTATTGAAGGCCTTCGTTATTTTTTTGATGATGTGCTCAATAT
GGGTGAGTGGGAAACAAAGGAAGCTTCATCATGGGAAGAAACAAATCAAC
AATTTGCAACTCATCCGACAAAAACCTGACTTAACAAAAAGACAGAGTCA
GAGTaTGTCTAGTGAACAGCCCGGGAAGAGAGACAATACGGTTCTGAAAC
GAACTACGAAAAACGACCCCAACGATGCGACCGACGCTCTAGTGAAAGAA
ATAAAGAATATCAACCTTAATGAATTCGCTGGCAAAAAGATGGGTAAAGC
GCAAAAGGGGTGGAGTACATCGTTGGGCGCTGCAGAATCACTTTACGATA
AGATTAAGCAAAAGGATAAAATGGGCATCGCAATTTCAACAATCACAATG
GCATCGGGGCTGGCTGCAATGACGGGTGGACCTGTCGGCTTCCTTGTTGC
CATAGCATTAGATACTGTCAAGACCATACTCACACTGATCGACAAACACC
AAAAAGGTCCCCCTGAAAGCGAATCTTCAAAACTGCAGAAAGCCATCGAA
AAATCCTTGAGAAAATTCACAGAGACGGAGTTGAGTGCTGATTGGAACGG
TTATAAGAGATTGACGGAGGTTTTTTTGAAGCATTTGGACATGATCGAAA
GCTTCGACGAGATCAAACCTTTGACAGGGAAGGATGAGGAGAAATTCAAT
ATCGAAGACATGGGAGGAAAAGAAGAAGTCAAACAGCAACTTTTTGATGA
AGTGTCCCCTCAAATCTACAAAGTGTTGACGGCCAGTACACACTTACTCG
GCAAGATTGAACATCATATCTCCAAGGTTTGTGATTTCGACATTCAAGCA
AGGAAGGTGAAAGAGN
Run BLAST on NCBI

protein sequence of TCONS_00029558-protein

>TCONS_00029558-protein ID=TCONS_00029558-protein|Name=TCONS_00029558-protein|organism=Clytia hemisphaerica|type=polypeptide|length=288bp
MQLLKAFVIFLMMCSIWVSGKQRKLHHGKKQINNLQLIRQKPDLTKRQSQ
SMSSEQPGKRDNTVLKRTTKNDPNDATDALVKEIKNINLNEFAGKKMGKA
QKGWSTSLGAAESLYDKIKQKDKMGIAISTITMASGLAAMTGGPVGFLVA
IALDTVKTILTLIDKHQKGPPESESSKLQKAIEKSLRKFTETELSADWNG
YKRLTEVFLKHLDMIESFDEIKPLTGKDEEKFNIEDMGGKEEVKQQLFDE
VSPQIYKVLTASTHLLGKIEHHISKVCDFDIQARKVKE
Run BLAST on NCBI

transcript from alignment at sc0000754:37176..42164-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029558 ID=TCONS_00029558|Name=TCONS_00029558|organism=Clytia hemisphaerica|type=transcript|length=4989bp|location=Sequence derived from alignment at sc0000754:37176..42164- (Clytia hemisphaerica)
CAGAGAAGAGTATTTATTGGATGAGGTGATATTTTCGTAATTTAATTTTT
TCAGCTATCTATTATTCATTTTTAATTTCTTTAACACACAATTTCTACTA
AAGGATATCAGAAAAGCATCTTTGTACATCTTTGTACAAAAAATCAGAAA
AAAGTAATGACAGGATTTTGCACAAAGTCCAAAAAACCCTATTTTTAGGT
AGTTTTTGAAATAAATTTTTTCTCAAAAATCGGGCTCCGTCACGTTCTGG
GCATTGCCATTTTGCATCATTGTGCAAAAAATCAGAAAAAAGTAATGACA
GGATGTTGCACAAAGTCCAAAAAACCCTATTTTTAGGTAGTTTTTGAAAT
AAATTTTTTCTCAAAAATCGGGCTCCGTCACGCTCTGGGCATTGCCATTT
TGCATCATTGTGCAAAAAATCAGAAAAAACTAATGAGCCAATCCTGAGAA
AAGCTGGTAACAGACGGACGGACGGACGGACAGGGGTTAATTTATAGGAC
CTCCACCGGGGTACCCGGAGGTAGGTCCAATAAACAAGTGATACTTTTAT
GGACCTACCTGATTATGCAATTAACACATATATAATTGATATCTACGTGA
GTGTGACCGTTAAACAATCATTCAGAACACAAATAGTGACGATCTATTAA
AATTAGTCGTTTGTTTTTTATAAAAAAAACGTTTAGAAACCAAAATTTCA
TGCCCTTGGAATATTCTTTCATATTCAAGACTTCGTGAGCAAAAAAAACA
TCTATCTCATCAAAAAATTGAGTAATTTGGCTAAGAACATTGATGTATCC
TTATTAATAGTGATTCTTATAGATAAACATGCGATTATTGAGCTTAAAAA
ATTTTTTATTACAAAAATCTGCGTGAGCCATCTTTTACCTACTTTCATGC
AAAAAATCAGAAAAAAACAATGATCCAATATTTCACAAATCCAAAAAACC
CTTTTTTTAGCTGTTTTTTGGCCCAAATTTGCCCAAAATTATTTTTTTTC
AAAAATCGGGCTCCGTCACATTCGTGGGTTTATAATTATGCATCTTTGTG
CAAAAGATCATAAAGAATGAAAGAGCCAATCTCGAGAAAAGCTAAAACCT
AAGTAATTGATAATGTGCTTATAAAAAAATATCGAATTTGGCCAGTTTTT
CTATAAAAACACGCCAAACAACCAAAATTTCATGTCTAGACACATATTCT
TCAAGAGTAAGCCCTCATGAGCAAAAAAAACATCTATCTCATAAAAAAAT
TGAGTAATTTGACTAAGAACATTGATGTATGCTTATTAATAGTGATTCTT
ATAGATAAACATGCGTTTTTTGAGCCAACAAATTTTTTCGCAAAAATCTG
CTTGAACCATATTTTACCTATGATGGTACCCTACTTTCATGCAAAAAAAA
TCAGAAAAAATTAATGATCCAATTTTTCGCAAAGTACAAAAAACCTGTTT
TTTAGCCGTTTTTTGGCCCAAATTTGCCCAAAAAAGTTTTTTTCGAAAAT
TGGGCTCCGTCACACATTCGAGGGTTTATAGTTATGCATCTTTGTGTAAA
AAATCATAAAGAATGCAAGAGCTAATCTCGAGAAAAGCTAATACCTAAGT
AATTGATAATGTGCTTATAAAAAATATCGAATTTGGTCAGTTTTTCTATA
TAAACGCGCCAAGCAACCAAAACTTCATGTTTAAACACACATATTTTTCA
AAAGTAAGCCCTCGTGAGCAAATGAGCAAAAAAAACATCTATCTCATAAA
AAATTTAGTAATTTGACTAAGAACATTTATGTATGCTTATTAATAGTGAT
TCTTATAGATAAACATGCGTTTTTTGAGCCAACAAATTTTTTTTTGCAAA
AATCTGCTTGAGCCATCTTTTACCTATGATGGTACCCTACTTTCATGCAA
AAAAATCAGAAATTAATTATATCCAATTTTTCACAAAGTCCAAAAAACCT
GTTTTTTAGCCGTTTTTTGGCCCAAATTTGCCCCAAAAATTTTTTTTTCG
AAAATCGGGCTCCGTCACATTTTGGCCACCACCATTTTGCACCTTTATAC
CAAAAATCGAAAGATTCCTATGATTCAATCCTGAGAAAAGTTGGTAACAG
ACGAACGGACGGACGAACAAACATAGGTTAATTTATAGGACCTCCACCGG
GGTACCGTGAGTATCACAGAGCGAATAAATATTTTCTCTTTGAAAACTTG
ACCTCTGATACTCAGGGTTCCACCGGGGTAGGTCCAAAAAAAAAAGAAAA
AAAATGATTAAAAAAATTTCAAGATTCTAAAAAAAAAAAAAAAAGGACAA
AATCAGACAAAAAAAGTTTGAAAAAAAACTAGAATAAAAGGCCGTGATAC
ACTGGTCAATATCAAATCAATATCAAAAAACTGTTACTATATATGGATCA
TAAATTTTATTGAGCTAATATTGCTGAATGTAAGGTAAAAAGTTGAATTT
AAATGATGTTCAAATTTATGAAAGTGCTCTATTGTTCGATTATTGAGCGA
AAGTTGATTTAAATTGAAATTTTTCAATTTAATTCGCCTTCCAGTCAATA
TTCAACAATAGAAAGTATGGAACGCCGTAGCTGCCTTATGTGATAAAAAT
ATGCGATTATGCGATAAAATATTCGATAAACTCTTTCTATGCGATAAATT
TTTCGTTAAATCATTCGATTATGCGATAATTCATTCGATAAACTCTTTCG
ATGCGATAAATTGTTCGATAAATCATTCGATGCGATAAAATATGCGATAA
AAATTTCGATTATGCGATAAATTATTTGATAACAAATTTGATGCGATAAA
TTATTCGATAAAAAATTCGATGCGATAAATCATTCGATAAAAAATTCGAT
GCGATAAACCATTCGATAAATTATTCGATGAATTATCCNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTCGATGAATTATCCGATCGGCC
CTTACCCGATATTTATACTTTTGGTGGAAACGGCGCTCCGGAAGGGTGAA
ATCATCGATCGAAAAGTAGATTTTCCGGGTGTGCTGCTGATTAGAGCAGA
TTATGGCAAAAAAAAAACATACCCGTCACCCGTTTTTGCCTAAGTACCCC
ACCCTGTTACTACTGTTACTATATATGGATATAAATCTAAAATGGATCGT
TTCCTTACACTTATCTATAATCTAAATCATATTTTAAAAATTTTCGCGAA
TTTTCGGAAAAACTTGCAAAATATAATCCTCCGGTAAATAAATTAGTTAA
GGAAACGAATCGAGGAGTTCATATCAAAATTTCTTTCTTTTAGGGAGTGT
TGATTGACCAGCGTTGAAAATGCAGCTATTGAAGGCCTTCGTTATTTTTT
TGATGATGTGCTCAATATGGGTGAGTGGGAAACAAAGGAAGCTTCATCAT
GGGAAGAAACAAATCAACAATTTGCAACTCATCCGACAAAAACCTGACTT
AACAAAAAGACAGAGTCAGAGTGTAAGTTATGTTGATATTATGTTAAATA
CTCAAACAAATAAAGATCAACAAATAAAAGAAGCAAAAAACCTATTATGC
AAGGGTCAAATTTGGCAAAATAATTTCATATAGAACCAGAAGGCTTCGAG
ACCAAAAGTTTAAGAAGATTCTCAGAACCTGTTACACCTTTTTTTAGAGA
ATAGATTTTTCTGAGGCTCGACTGTTCTTATTTTTCGGCACTTTTAAGCC
TAAAATTGTTTTTATCCTGTTCTTGTTTATACGCGTTATACCCAATTTTT
TTATTATTTAGACTTCAAAGCGTGTCATTTTTTAAGATACTGCGGACCAA
TACTAGCAAAATATTGAAAACATGAACACTTTTAAATTAAAACATCTGAA
GTCTTCAAAAGTTTTTGATGTTCTTATGAAAAAAAGCCGAGTCAAAATAG
AAACAATGCGTAGGATCTTGAACAATTTATTACTCTGAACTTTATTGCAG
CATATTTATTTTTCTAGATGTCTAGTGAACAGCCCGGGAAGAGAGACAAT
ACGGTTCTGAAACGAACTACGAAAAACGACCCCAACGATGCGACCGACGC
TCTAGTGAAAGAAATAAAGAATATCAACCTTAATGAATTCGCTGGCAAAA
AGATGGGTAAAGCGCAAAGTAAGAAAGATTTCAAAAAGTTCCTAAATTTC
ATATAATATCAGTGGGCATATTGCAGAGTTAAGGCAGCGAGCTGTAAACA
TTGGGATACTTTGCGTATTCATTTGAAAAGCCTTTACACTATATTACAGG
TCTTTTTGGTATTATTACCGGGATTGTGACGGGAAACAGTTTGCATTAAA
TAGGTCTTTTAATATTTCTTTCCACAAGCCCCTCCAAACCAAGACATTCG
TTTTAAAACATTCATTTTCTTTCTACAGAGGGGTGGAGTACATCGTTGGG
CGCTGCAGAATCACTTTACGATAAGATTAAGCAAAAGGATAAAATGGGCA
TCGCAATTTCAACAATCACAATGGCATCGGGGCTGGCTGCAATGACGGGT
GGACCTGTCGGCTTCCTTGTTGCCATAGCATTAGATACTGTCAAGACCAT
ACTCACACTGATCGACAAACACCAAAAAGGTCCCCCTGAAAGCGAATCTT
CAAAACTGCAGAAAGCCATCGAAAAATCCTTGAGAAAATTCACAGAGACG
GAGTTGAGTGCTGATTGGAACGGTTATAAGAGATTGACGGAGGTTTTTTT
GAAGCATTTGGACATGATCGAAAGCTTCGACGAGATCAAACCTTTGACAG
GGAAGGATGAGGAGAAATTCAATATCGAAGACATGGGAGGAAAAGAAGAA
GTCAAACAGCAACTTTTTGATGAAGTGTCCCCTCAAATCTACAAAGTGTT
GACGGCCAGTACACACTTACTCGGCAAGATTGAACATCATATCTCCAAGG
TTTGTGATTTCGACATTCAAGCAAGGAAGGTGAAAGAGN

Coding sequence (CDS) from alignment at sc0000754:37176..42164-

>TCONS_00029558 ID=TCONS_00029558|Name=TCONS_00029558|organism=Clytia hemisphaerica|type=CDS|length=2592bp|location=Sequence derived from alignment at sc0000754:37176..42164- (Clytia hemisphaerica)
AGGGGTGGAGTACATCGTTGGGCGCTGCAGAATCACTTTACGATAAGATT
AAGCAAAAGGATAAAATGGGCATCGCAATTTCAACAATCACAATGGCATC
GGGGCTGGCTGCAATGACGGGTGGACCTGTCGGCTTCCTTGTTGCCATAG
CATTAGATACTGTCAAGACCATACTCACACTGATCGACAAACACCAAAAA
GGTCCCCCTGAAAGCGAATCTTCAAAACTGCAGAAAGCCATCGAAAAATC
CTTGAGAAAATTCACAGAGACGGAGTTGAGTGCTGATTGGAACGGTTATA
AGAGATTGACGGAGGTTTTTTTGAAGCATTTGGACATGATCGAAAGCTTC
GACGAGATCAAACCTTTGACAGGGAAGGATGAGGAGAAATTCAATATCGA
AGACATGGGAGGAAAAGAAGAAGTCAAACAGCAACTTTTTGATGAAGTGT
CCCCTCAAATCTACAAAGTGTTGACGGCCAGTACACACTTACTCGGCAAG
ATTGAACATCATATCTCCAAGGTTTGTGATTTCGACATTCAAGCAAGGAA
GGTGAAAGAGATGTCTAGTGAACAGCCCGGGAAGAGAGACAATACGGTTC
TGAAACGAACTACGAAAAACGACCCCAACGATGCGACCGACGCTCTAGTG
AAAGAAATAAAGAATATCAACCTTAATGAATTCGCTGGCAAAAAGATGGG
TAAAGCGCAAAATGCAGCTATTGAAGGCCTTCGTTATTTTTTTGATGATG
TGCTCAATATGGGTGAGTGGGAAACAAAGGAAGCTTCATCATGGGAAGAA
ACAAATCAACAATTTGCAACTCATCCGACAAAAACCTGACTTAACAAAAA
GACAGAGTCAGAGTAGGGGTGGAGTACATCGTTGGGCGCTGCAGAATCAC
TTTACGATAAGATTAAGCAAAAGGATAAAATGGGCATCGCAATTTCAACA
ATCACAATGGCATCGGGGCTGGCTGCAATGACGGGTGGACCTGTCGGCTT
CCTTGTTGCCATAGCATTAGATACTGTCAAGACCATACTCACACTGATCG
ACAAACACCAAAAAGGTCCCCCTGAAAGCGAATCTTCAAAACTGCAGAAA
GCCATCGAAAAATCCTTGAGAAAATTCACAGAGACGGAGTTGAGTGCTGA
TTGGAACGGTTATAAGAGATTGACGGAGGTTTTTTTGAAGCATTTGGACA
TGATCGAAAGCTTCGACGAGATCAAACCTTTGACAGGGAAGGATGAGGAG
AAATTCAATATCGAAGACATGGGAGGAAAAGAAGAAGTCAAACAGCAACT
TTTTGATGAAGTGTCCCCTCAAATCTACAAAGTGTTGACGGCCAGTACAC
ACTTACTCGGCAAGATTGAACATCATATCTCCAAGGTTTGTGATTTCGAC
ATTCAAGCAAGGAAGGTGAAAGAGATGTCTAGTGAACAGCCCGGGAAGAG
AGACAATACGGTTCTGAAACGAACTACGAAAAACGACCCCAACGATGCGA
CCGACGCTCTAGTGAAAGAAATAAAGAATATCAACCTTAATGAATTCGCT
GGCAAAAAGATGGGTAAAGCGCAAAATGCAGCTATTGAAGGCCTTCGTTA
TTTTTTTGATGATGTGCTCAATATGGGTGAGTGGGAAACAAAGGAAGCTT
CATCATGGGAAGAAACAAATCAACAATTTGCAACTCATCCGACAAAAACC
TGACTTAACAAAAAGACAGAGTCAGAGTAGGGGTGGAGTACATCGTTGGG
CGCTGCAGAATCACTTTACGATAAGATTAAGCAAAAGGATAAAATGGGCA
TCGCAATTTCAACAATCACAATGGCATCGGGGCTGGCTGCAATGACGGGT
GGACCTGTCGGCTTCCTTGTTGCCATAGCATTAGATACTGTCAAGACCAT
ACTCACACTGATCGACAAACACCAAAAAGGTCCCCCTGAAAGCGAATCTT
CAAAACTGCAGAAAGCCATCGAAAAATCCTTGAGAAAATTCACAGAGACG
GAGTTGAGTGCTGATTGGAACGGTTATAAGAGATTGACGGAGGTTTTTTT
GAAGCATTTGGACATGATCGAAAGCTTCGACGAGATCAAACCTTTGACAG
GGAAGGATGAGGAGAAATTCAATATCGAAGACATGGGAGGAAAAGAAGAA
GTCAAACAGCAACTTTTTGATGAAGTGTCCCCTCAAATCTACAAAGTGTT
GACGGCCAGTACACACTTACTCGGCAAGATTGAACATCATATCTCCAAGG
TTTGTGATTTCGACATTCAAGCAAGGAAGGTGAAAGAGATGTCTAGTGAA
CAGCCCGGGAAGAGAGACAATACGGTTCTGAAACGAACTACGAAAAACGA
CCCCAACGATGCGACCGACGCTCTAGTGAAAGAAATAAAGAATATCAACC
TTAATGAATTCGCTGGCAAAAAGATGGGTAAAGCGCAAAATGCAGCTATT
GAAGGCCTTCGTTATTTTTTTGATGATGTGCTCAATATGGGTGAGTGGGA
AACAAAGGAAGCTTCATCATGGGAAGAAACAAATCAACAATTTGCAACTC
ATCCGACAAAAACCTGACTTAACAAAAAGACAGAGTCAGAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016874XLOC_016874Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029558-proteinTCONS_00029558-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029558-exon-sc0000754-1575043694:42140..42164TCONS_00029558-exon-sc0000754-1575043694:42140..42164Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1575043694:38643..38821TCONS_00029558-exon-sc0000754-1575043694:38643..38821Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1575043694:37997..38147TCONS_00029558-exon-sc0000754-1575043694:37997..38147Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1575043694:37176..37736TCONS_00029558-exon-sc0000754-1575043694:37176..37736Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1510915933:42140..42164TCONS_00029558-exon-sc0000754-1510915933:42140..42164Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1510915933:38643..38821TCONS_00029558-exon-sc0000754-1510915933:38643..38821Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1510915933:37997..38147TCONS_00029558-exon-sc0000754-1510915933:37997..38147Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1510915933:37176..37736TCONS_00029558-exon-sc0000754-1510915933:37176..37736Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1491911889:42140..42164TCONS_00029558-exon-sc0000754-1491911889:42140..42164Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1491911889:38643..38821TCONS_00029558-exon-sc0000754-1491911889:38643..38821Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1491911889:37997..38147TCONS_00029558-exon-sc0000754-1491911889:37997..38147Clytia hemisphaericaexon
TCONS_00029558-exon-sc0000754-1491911889:37176..37736TCONS_00029558-exon-sc0000754-1491911889:37176..37736Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000754supercontigsc0000754:37176..42164 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.100622	0	0	0	0	0	0	0.235843	0	1.58386	0.861278	2.83669	2.41787	7.43945	20.3496	0	0	0	0.0558198	0	0	0.11895	0.0860492	0.0623682	0.164028	0	0.11643	0.0728989	0.0567461
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029558 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top