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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029553 ID=TCONS_00029553|Name=TCONS_00029553|organism=Clytia hemisphaerica|type=transcript|length=3786bpRun BLAST on NCBI transcript from alignment at sc0000754:75524..96367+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029553 ID=TCONS_00029553|Name=TCONS_00029553|organism=Clytia hemisphaerica|type=transcript|length=20844bp|location=Sequence derived from alignment at sc0000754:75524..96367+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029553 vs. Swiss-Prot (Human)
Match: LETM1 (Mitochondrial proton/calcium exchanger protein OS=Homo sapiens GN=LETM1 PE=1 SV=1) HSP 1 Score: 351.673 bits (901), Expect = 8.161e-105 Identity = 186/339 (54.87%), Postives = 259/339 (76.40%), Query Frame = 3
Query: 1665 VIVKKPLRERLMDEVRHYYKGFRLLYLDARIAARLLWQVMNGKALTRRERKQFLRTAADLFRLVPFSVFLIVPFMEFLLPVAIKLFPGMLPSTFEXXXXXXXXXXXXXXXXLQMAEFLQDTIEEIAVTSNSSKPSKKLTEFSDFVTKIRNEGDQVSNLQIMKFSKLFEDEITLDNIPYDQLKALCRILLISPIGTPGFLRFKLRMKLQELKADDLMISKEGIDSLSTEELQNACVARGMRSMGVPMDRLKSNLKQWLELSLNESIPASLLLLSRTLFMSRTVNVDEQLKVTISQLPERIIDEMEVKIGAKEGESVDRQTIIDIIQHEEELIKAERKEKE 2681
V+VKK L +R++DE++HYY GFRLL++D +IAAR+LW+++NG +LTRRER+QFLR ADLFRLVPF VF++VPFMEFLLPVA+KLFP MLPSTFE + K+ + L++KL++A+FLQDTIEE+A+ + ++K S +FS F KIR G++ SN +IM+FSKLFEDE+TLDN+ QL ALC++L + IGT FLRF+L M+L+ +KADD +I++EG+DSL+ +ELQ AC ARGMR++GV DRL+ LKQWL+L L++ IP SLL+LSR +++ T++ +QLK T+ LPE + E +VK+ EGE VD + ++ EE I+ E +EKE
Sbjct: 147 VVVKKSLGQRVLDELKHYYHGFRLLWIDTKIAARMLWRILNGHSLTRRERRQFLRICADLFRLVPFLVFVVVPFMEFLLPVAVKLFPNMLPSTFETQSLKEERLKKELRVKLELAKFLQDTIEEMALKNKAAKGSAT-KDFSVFFQKIRETGERPSNEEIMRFSKLFEDELTLDNLTRPQLVALCKLLELQSIGTNNFLRFQLTMRLRSIKADDKLIAEEGVDSLNVKELQAACRARGMRALGVTEDRLRGQLKQWLDLHLHQEIPTSLLILSRAMYLPDTLSPADQLKSTLQTLPEIVAKEAQVKVAEVEGEQVDNKAKLEATLQEEAAIQQEHREKE 484 The following BLAST results are available for this feature:
BLAST of TCONS_00029553 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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