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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029541 ID=TCONS_00029541|Name=TCONS_00029541|organism=Clytia hemisphaerica|type=transcript|length=2069bp
GAAAGATAATGGTTAAACGCCATGATGAGGAGGATTCGTGGAACTTTgtc
ttgatttttgaaaactatatacaaaatgttgtaaacacacacacacacct
TAGCTGTAATATATAAGTTAGTGGCTAATGACTATAATCGCCATATTGCT
GATATCTAATATTtgtcaaattgttttttcagaaattaaagaaataatGA
GTAAAAGTATTATAAGGAATGACACAAACAACAATGGGATGAAAAATGAA
TGCTGCATTCCAGGTTGTAAACACAAAGAAGGAATCCACAGAAGtatttc
attttacaatttCCCTGACCAGGTATCTGATTTTATTGCGTATAGATGTT
GGCTGAGAGAGGTAAGGAAATTCAAATCAGATTGCGGCGAAACTTTCGAT
CCAGTTGAAGATGTATTAATTTGTGAAAATCATTTCCGAAATGAAGATTT
CTCAATTGATCTGAAGACTGGTAGGAAGCACTTGAAACATGGTTCTGTCC
CTTGTTTGTTGTCCAACTACTCGAGCAATGAGAGTGATGTTGAGGTTGTA
AATGTTGACCAAGAAGCAGAGACGAGGAATTTTGACAGGATTGAATACAA
TAGGGATGAGATTAAACCAGTGATCAAGAAAGCAGGACAATCTAAGAATT
TTGAACACTATCGATTGTTACAAGAGAAAGAAGAGCAAGAAGAAAAGTTG
AGACGACTTTTAGCTCAACAAGAAGAACACCGTGGACGATTTGCAAatgc
aaaacaaacacaaaataaaGTCGAATACCATAAGGAGGAGTTAAATAAAC
TACGACGAGCCAAACAATTATTAGACCTCGAAGAAAAACAAAGACAGTTA
ACAGAAGCTCAAGCTAAAATGAAGGAACGCAAGAATAAGAATGAATCACC
ACAAGGTAATAAACAAACAACTAGCCCTGTTGTTTGGAAacagaaaaagg
aaaatctgCAACAGATGCTGGAGCAGCAAAAAGAGCGACTTGCTGAAATA
CAAAAACAAGAATCTATGTATGGTACCAACAAGAAAAGAAAACGTCAAAC
AGATTCACCTACACCGAGAGATTTTGAGCAGGACAAACTACCCACTACAA
CAACGGCATCATCCAAGACCATTGCACAGTCAGTCATTTCATGTGGTAAA
TGTATCAAACTTGAAGCTGACCTTAGACTCATATCACAACAATATAtaga
attgaaaaaagaaaatgaacaatTAAAATTTGAACTAAGACAAACTCAAA
AGAAATAGGTTTTTTAAANGAAAGAAGAGCAAGAAGAAAAGTTGAGACGA
CTTTTAGCTCAACAAGAAGAACACCGTGGACGATTTGCAAatgcaaaaca
aacacaaaataaaGTCGAATACCATAAGGAGGAGTTGAATAAACTACGAC
GAGCCAAACAATTATTAGAACTCGAAGAAAAACAAAGACAGTTAACAGAA
GCTCAAGCTAAAATGAAGGAACGCAAGAATAAGAATGAATCACCACAAGG
TAATAAACAAACAACTAGCCCTGTTGTTTGGAAacagaaaaaggaaaatc
tgCAACAGATGCTGGAGCAGCAAAAAGAGCGACTTGCTGAAATACAAAAA
CAAGAATCTATGTATGGTACCAACAAGAAAAGAAAACGTCAAACAGATTC
ACCTACACCGAGAGATTTTGAGCAGGACAAACTACCCACTACAACAACGG
CATCATCCAAGACCATTGCACAGTCAGTCATTTCATGTGGTAAATGTATC
AAACTTGAAGCTGACCTTAGACTCATATCACAACAATATAtagaattgaa
aaaagaaaatgaacaattaaaatttgagctaaGACAAACTCAAAAGAAAT
AGGTTTTTTTATTGTCTTCATTTTATTTCTAGGGTAAGAATAGTTCTAAG
ATGTACTCAATAGGGCatattttgacatattttggggAACCTTCCATCCA
TTGTCTGCATTGAACACGTTTATGTTGTTGTTTATGTTTTACTACCTTGT
AAAATTAAAGACATTACGGCTTCATTATTggttgaaatcaaaaaatttca
ccgGAGCATAATTCTGCTT Run BLAST on NCBI protein sequence of TCONS_00029541-protein >TCONS_00029541-protein ID=TCONS_00029541-protein|Name=TCONS_00029541-protein|organism=Clytia hemisphaerica|type=polypeptide|length=376bp
MTIIAILLISNICQIVFSEIKEIMSKSIIRNDTNNNGMKNECCIPGCKHK
EGIHRSISFYNFPDQVSDFIAYRCWLREVRKFKSDCGETFDPVEDVLICE
NHFRNEDFSIDLKTGRKHLKHGSVPCLLSNYSSNESDVEVVNVDQEAETR
NFDRIEYNRDEIKPVIKKAGQSKNFEHYRLLQEKEEQEEKLRRLLAQQEE
HRGRFANAKQTQNKVEYHKEELNKLRRAKQLLDLEEKQRQLTEAQAKMKE
RKNKNESPQGNKQTTSPVVWKQKKENLQQMLEQQKERLAEIQKQESMYGT
NKKRKRQTDSPTPRDFEQDKLPTTTTASSKTIAQSVISCGKCIKLEADLR
LISQQYIELKKENEQLKFELRQTQKK Run BLAST on NCBI transcript from alignment at sc0000753:88141..90209 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029541 ID=TCONS_00029541|Name=TCONS_00029541|organism=Clytia hemisphaerica|type=transcript|length=2069bp|location=Sequence derived from alignment at sc0000753:88141..90209 (Clytia hemisphaerica)
AAGCAGAATTATGCTCcggtgaaattttttgatttcaaccAATAATGAAG
CCGTAATGTCTTTAATTTTACAAGGTAGTAAAACATAAACAACAACATAA
ACGTGTTCAATGCAGACAATGGATGGAAGGTTccccaaaatatgtcaaaa
tatGCCCTATTGAGTACATCTTAGAACTATTCTTACCCTAGAAATAAAAT
GAAGACAATAAAAAAACCTATTTCTTTTGAGTTTGTCttagctcaaattt
taattgttcattttcttttttcaattctaTATATTGTTGTGATATGAGTC
TAAGGTCAGCTTCAAGTTTGATACATTTACCACATGAAATGACTGACTGT
GCAATGGTCTTGGATGATGCCGTTGTTGTAGTGGGTAGTTTGTCCTGCTC
AAAATCTCTCGGTGTAGGTGAATCTGTTTGACGTTTTCTTTTCTTGTTGG
TACCATACATAGATTCTTGTTTTTGTATTTCAGCAAGTCGCTCTTTTTGC
TGCTCCAGCATCTGTTGcagattttcctttttctgtTTCCAAACAACAGG
GCTAGTTGTTTGTTTATTACCTTGTGGTGATTCATTCTTATTCTTGCGTT
CCTTCATTTTAGCTTGAGCTTCTGTTAACTGTCTTTGTTTTTCTTCGAGT
TCTAATAATTGTTTGGCTCGTCGTAGTTTATTCAACTCCTCCTTATGGTA
TTCGACtttattttgtgtttgttttgcatTTGCAAATCGTCCACGGTGTT
CTTCTTGTTGAGCTAAAAGTCGTCTCAACTTTTCTTCTTGCTCTTCTTTC
NTTTAAAAAACCTATTTCTTTTGAGTTTGTCTTAGTTCAAATTTTAattg
ttcattttcttttttcaattctaTATATTGTTGTGATATGAGTCTAAGGT
CAGCTTCAAGTTTGATACATTTACCACATGAAATGACTGACTGTGCAATG
GTCTTGGATGATGCCGTTGTTGTAGTGGGTAGTTTGTCCTGCTCAAAATC
TCTCGGTGTAGGTGAATCTGTTTGACGTTTTCTTTTCTTGTTGGTACCAT
ACATAGATTCTTGTTTTTGTATTTCAGCAAGTCGCTCTTTTTGCTGCTCC
AGCATCTGTTGcagattttcctttttctgtTTCCAAACAACAGGGCTAGT
TGTTTGTTTATTACCTTGTGGTGATTCATTCTTATTCTTGCGTTCCTTCA
TTTTAGCTTGAGCTTCTGTTAACTGTCTTTGTTTTTCTTCGAGGTCTAAT
AATTGTTTGGCTCGTCGTAGTTTATTTAACTCCTCCTTATGGTATTCGAC
tttattttgtgtttgttttgcatTTGCAAATCGTCCACGGTGTTCTTCTT
GTTGAGCTAAAAGTCGTCTCAACTTTTCTTCTTGCTCTTCTTTCTCTTGT
AACAATCGATAGTGTTCAAAATTCTTAGATTGTCCTGCTTTCTTGATCAC
TGGTTTAATCTCATCCCTATTGTATTCAATCCTGTCAAAATTCCTCGTCT
CTGCTTCTTGGTCAACATTTACAACCTCAACATCACTCTCATTGCTCGAG
TAGTTGGACAACAAACAAGGGACAGAACCATGTTTCAAGTGCTTCCTACC
AGTCTTCAGATCAATTGAGAAATCTTCATTTCGGAAATGATTTTCACAAA
TTAATACATCTTCAACTGGATCGAAAGTTTCGCCGCAATCTGATTTGAAT
TTCCTTACCTCTCTCAGCCAACATCTATACGCAATAAAATCAGATACCTG
GTCAGGGaaattgtaaaatgaaataCTTCTGTGGATTCCTTCTTTGTGTT
TACAACCTGGAATGCAGCATTCATTTTTCATCCCATTGTTGTTTGTGTCA
TTCCTTATAATACTTTTACTCattatttctttaatttctgaaaaaacaat
ttgacaAATATTAGATATCAGCAATATGGCGATTATAGTCATTAGCCACT
AACTTATATATTACAGCTAaggtgtgtgtgtgtgtttacaacattttgta
tatagttttcaaaaatcaagacAAAGTTCCACGAATCCTCCTCATCATGG
CGTTTAACCATTATCTTTC Coding sequence (CDS) from alignment at sc0000753:88141..90209 >TCONS_00029541 ID=TCONS_00029541|Name=TCONS_00029541|organism=Clytia hemisphaerica|type=CDS|length=1131bp|location=Sequence derived from alignment at sc0000753:88141..90209 (Clytia hemisphaerica)
CTATTTCTTTTGAGTTTGTCTTAGTTCAAATTTTAattgttcattttctt
ttttcaattctaTATATTGTTGTGATATGAGTCTAAGGTCAGCTTCAAGT
TTGATACATTTACCACATGAAATGACTGACTGTGCAATGGTCTTGGATGA
TGCCGTTGTTGTAGTGGGTAGTTTGTCCTGCTCAAAATCTCTCGGTGTAG
GTGAATCTGTTTGACGTTTTCTTTTCTTGTTGGTACCATACATAGATTCT
TGTTTTTGTATTTCAGCAAGTCGCTCTTTTTGCTGCTCCAGCATCTGTTG
cagattttcctttttctgtTTCCAAACAACAGGGCTAGTTGTTTGTTTAT
TACCTTGTGGTGATTCATTCTTATTCTTGCGTTCCTTCATTTTAGCTTGA
GCTTCTGTTAACTGTCTTTGTTTTTCTTCGAGGTCTAATAATTGTTTGGC
TCGTCGTAGTTTATTTAACTCCTCCTTATGGTATTCGACtttattttgtg
tttgttttgcatTTGCAAATCGTCCACGGTGTTCTTCTTGTTGAGCTAAA
AGTCGTCTCAACTTTTCTTCTTGCTCTTCTTTCTCTTGTAACAATCGATA
GTGTTCAAAATTCTTAGATTGTCCTGCTTTCTTGATCACTGGTTTAATCT
CATCCCTATTGTATTCAATCCTGTCAAAATTCCTCGTCTCTGCTTCTTGG
TCAACATTTACAACCTCAACATCACTCTCATTGCTCGAGTAGTTGGACAA
CAAACAAGGGACAGAACCATGTTTCAAGTGCTTCCTACCAGTCTTCAGAT
CAATTGAGAAATCTTCATTTCGGAAATGATTTTCACAAATTAATACATCT
TCAACTGGATCGAAAGTTTCGCCGCAATCTGATTTGAATTTCCTTACCTC
TCTCAGCCAACATCTATACGCAATAAAATCAGATACCTGGTCAGGGaaat
tgtaaaatgaaataCTTCTGTGGATTCCTTCTTTGTGTTTACAACCTGGA
ATGCAGCATTCATTTTTCATCCCATTGTTGTTTGTGTCATTCCTTATAAT
ACTTTTACTCattatttctttaatttctgaaaaaacaatttgacaAATAT
TAGATATCAGCAATATGGCGATTATAGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029541-exon-sc0000753-1491911889:88141..90209 | TCONS_00029541-exon-sc0000753-1491911889:88141..90209 | Clytia hemisphaerica | exon |
| TCONS_00029541-exon-sc0000753-1510915933:88141..90209 | TCONS_00029541-exon-sc0000753-1510915933:88141..90209 | Clytia hemisphaerica | exon |
| TCONS_00029541-exon-sc0000753-1575043694:88141..90209 | TCONS_00029541-exon-sc0000753-1575043694:88141..90209 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000753 | supercontig | sc0000753:88141..90209 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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