|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029530 ID=TCONS_00029530|Name=TCONS_00029530|organism=Clytia hemisphaerica|type=transcript|length=1217bp
NCAACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAA
GAGACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAG
ACTCAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATG
GTGTAACAAAAGCAGGTCAGCTCTGTTCAATGCTCGACCGTGCTGGTGGT
AAGAATATAGCATGTAATGAGATGACGAAACGATACTTCCTTCATTACCA
ATGGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTACTTCTTCCCTT
ACCTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATTGGTGGATCTA
GTGCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCAATAATTActt
caattataaaatcaaCTCTAAACTTAAGATGAGGATTATCATCTGGTTCA
ATTTGGTCCTGAAGTTTCTTTACATCGGTATCAACTTTGCTGGCTTCTTT
CTGACCGATTTCACAATGGATAGCCTTTTCATCGACTACGGTGCCGCTTG
GTGGGAATGGAATAAAGTACCTAACTCTATTGCGCATGACATTGTGAAGA
CTGGTATACCAAAGCCTGGAGATCGGTTTTTACCTTCTGTTGGTATATGT
GAAGTACACGAAGCTTTGAATGATAAACGTGGAGTTTATATTGATAAACA
TAAAGTAATTTGCGAAGTCAGTCAAAACATTCGATACCAATACATTTTCA
TTATCCTCTGGTTCTTCTTTGCAACTGGTGTTCTCATTTCAACCCTGGGG
CTATTCCACTTAATTTACTCCACCCTCAAAGCAATGTTTGTAGTGTACAA
TCCGACATGCTATGAAGAAGAACTACGTGAGAGAATCAGTGAACAGCTCA
CATTACGAGAAATTGAATACCTTGAGAAGATCCGTCTGATGGACATGACA
ATGTATGGTGAAGTTATACGTGAATTGTATCGTTACAAACCTGGTCTTCA
AACCATCAAAAGATTCAATGAATCAGCAACTTCAGATTCTGTCAGTTTGA
TGCCATCTGCGCCGAATACGGCACGCACTTCCCGCACCACATTATATGAC
TCAAGAGAAGAATTTCTTTCAGATTGAATACTAATGTTTTGTGGACTAAC
AACAATTTAAAACATAATTGTTTTTTGGAATATTATTGACCTTGTTTCAG
TTTTTACTTATCATCGT Run BLAST on NCBI protein sequence of TCONS_00029530-protein >TCONS_00029530-protein ID=TCONS_00029530-protein|Name=TCONS_00029530-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp
NCMVSARLHELKEFVQETCWIQGFYIYQEMHTRLNESSYYGIPEYNGYDG
VTKAGQLCSMLDRAGGKNIACNEMTKRYFLHYQWLPFFVCSMAILYFFPY
LIFRAGNSDIISLVDLVLTGNMKDVDKLVNNYFNYKINSKLKMRIIIWFN
LVLKFLYIGINFAGFFLTDFTMDSLFIDYGAAWWEWNKVPNSIAHDIVKT
GIPKPGDRFLPSVGICEVHEALNDKRGVYIDKHKVICEVSQNIRYQYIFI
ILWFFFATGVLISTLGLFHLIYSTLKAMFVVYNPTCYEEELRERISEQLT
LREIEYLEKIRLMDMTMYGEVIRELYRYKPGLQTIKRFNESATSDSVSLM
PSAPNTARTSRTTLYDSREEFLSD Run BLAST on NCBI transcript from alignment at sc0000753:65109..68856+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029530 ID=TCONS_00029530|Name=TCONS_00029530|organism=Clytia hemisphaerica|type=transcript|length=3748bp|location=Sequence derived from alignment at sc0000753:65109..68856+ (Clytia hemisphaerica)
NCAACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAA
GAGACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAG
ACTCAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATG
GTGTAACAAAAGCAGGTAGACTACAATATTTCTTTCCTCCTCAGTTCTTG
TGAATTTTTATCAAACAACCCTCGAAACCTTCTTCAACAACGTCCCAGGT
GGGAAATTGGTTAATCTTGCTGGATTCATCACCACCTGGGGAAGTCGCAA
TAAATCTTTAAACTGCAAACTTACTAGCATTTGAATTGCAAAAtcttaaa
acacccccttctcacagaccgaCTGGGaatccttcccactggaaaaattg
gccaaaatatcgtccacggtggaaaattatcttcaaattataaTCAAATT
AGCCAAATTTTTCCATCCCATTGAATTTTgagaacaaaagaattgaaatc
cccattcATAAAAGATATGTGAATATTAATGcccatcgagttttagtccg
ttattttttaCCCAGTGggggctgaaaaaatcctaccgggtctgtgagaa
gggggtatctTAAAACAAGAATTCCGATTCCAATTAGATAGATATTCTTC
ACTGGgtttgtgagacagggatgttccCTCCAAACAAGTCTAAATTCACC
ACTAAAACTGATTTCTTTCTTCTACAGGTCAGCTCTGTTCAATGCTCGAC
CGTGCTGGTGGTAAGAATATAGCATGTAATGAGATGACGAAACGATACTT
CCTTCATTACCAATGGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCT
ACTTCTTCCCTTACCTTATTTTCCGTGCTGGGAACAGTGATATTATCTCA
TTGGTGGATCTAGTGCTCACTGGTAACATGAAAGATGTTGACAAACTTGT
CAATAATTActtcaattataaaatcaaCTCTAAACTTAAGATGAGGATTA
TCATCTGGTTCAATTTGGTCCTGAAGGTAAAAGACTTTCTAAAGTGTTTT
CAAAATCTCATAACTCTAGCAAGAAGCAGTCTATTAGTATATTATGACCA
ACCCCCGGGGGAGATACTTAGGAGAAATTGGGACCAGGGACGTGCCACTG
GCCAGGGTCCCTTTTCTAGGCTCTGAAAATATCTGatagggtcccaaatt
tactaattttcaacatttgtacCTGACAGGGTcgtcttttggttattttg
gacaattttcagggtggaaattagaaaaATTTTCAATCTTTTGTCTATAT
TtcgtcatttttgccacttttcaggatGAAATGGGAAatctttttcgatt
ttccttccgacagggtcccaaatttgccaaacattcgtatctgacagggt
ccacttttcaaactccagtggcACGTCCCAGTTGGCCGTCAAGGTCCAAC
CTTTAAACTAGGATAAATCTTTCTTCATTTTGTCGGCCTGTAGAGTGGAA
TAAATTGGCATAATAAGAGTTTATAGTAATGCTATTTCTTCGCTTTTGAA
TATGTACAGAAATGTCCAAATCATATAGTGTCTTTCAGTTTCCAGATCCC
TGctactttacatttttttattataaaacacCCGTCTCACATCCCCGgtg
tggataaaaattctattgttttgttCCCGAGCTTAAAATATCCATTGGGG
ATGATTTTGGACGGCAAATTGTTgtattgaatttcgaatggggatgaaat
caaaatcaatttcccagtggggctgaaatcaTGGGGTATATTGTCCACTg
gagacgaaattttggccaaatcttTCAGTGttgctggggtcccagcgggt
ctgtagCACAGGGGTGCCATAAACAAGTGagaaaaaaccggtcattattg
tatttgttaaccgtttccgtcagcttcgattgatttttagcgctttatcc
aggaatttctgacgtcagaaataaaaattgaGAGAAATGATATcaacgca
ttttttttttttttttttttattcatttgttcCTGGATTTTAAACCAttg
catttttttaataagtcaCAAATTTATTTGGATATACAtataatagaaat
caaatatattttaagatgaaaaatctgaaaaacagtGAGCAATGACCAAG
AGGAtatcaacgcattgttcattttcctttgaaaaagtgacgtcaaaatg
aattttcctaacgacgggcaactctgggaagtgtaggcccgtcgtcatgc
aaaaagaaccaattgcattgcaaGAAAAGCTGTGTAGcccgctttgaaaa
agtaaccggcTAACAATCAATAATACTATTAGTCTTTTTCCTAGGATTTG
TGCATCTTTTTTTACACGTTattatctaaaaaaatatatactaaAATGCA
AATCCCTATAAAATAGACTAAAACTGGAACAAATTTGCTTCCCTAAGGAT
ATTTGACATATGAAGGCTCAGTACCAATTCTTTTTTACTTTACTCATTTT
CAGTTTCTTTACATCGGTATCAACTTTGCTGGCTTCTTTCTGACCGATTT
CACAATGGATAGCCTTTTCATCGACTACGGTGCCGCTTGGTGGGAATGGA
ATAAAGTACCTAACTCTATTGCGCATGACATTGTGAAGACTGGTATACCA
AAGCCTGGAGATCGGTTTTTACCTTCTGTTGGTATATGTGAAGTACACGA
AGCTTTGAATGATAAACGTGGAGTTTATATTGATAAGTGAGTAGTCTAGC
TGGATCGCTTGAGaaaaactgtaaaaaatgtttttaaaaatgtgtGTAAT
TAGATcggtttcaaaatatttcttccccATCTTAATTGAACCTCATTCAT
TAGCATAGGCATCAGCTTTACAGTGTTTTCTGATAGCACCAGATGATACG
TTGATACCAATCTTACATCTCATTGGTAGTGTAAATAAAGCCTTGGATAC
ACAGTGATGAGGTTGTTGCTGAGGAAATGATTTTAGCATTTTAACCTGCC
AAAATCTTGTTTCCTTTTTCAACACAGCTACGCTACTTTATTCTCATTTC
TAGTCTTTCGTAGAAAAGCACGGACCTTACGAGATCGCTTAATTTAGTAT
CATTTGCCTTTACGCATATCTTTAGCTTTGGCTTTGCGTGCAGAAAACAA
CGACGACCTGATTTCATGTCACCTCAGGTTGTCTTAGCTCTGTTTTTCTT
CAAGTGTATTTTCAATCTTGTATTTCAGACATAAAGTAATTTGCGAAGTC
AGTCAAAACATTCGATACCAATACATTTTCATTATCCTCTGGTTCTTCTT
TGCAACTGGTGTTCTCATTTCAACCCTGGGGCTATTCCACTTAATTTACT
CCACCCTCAAAGCAATGTTTGTAGTGTACAATCCGACATGCTATGAAGAA
GAACTACGTGAGAGAATCAGTGAACAGCTCACATTACGAGAAATTGAATA
CCTTGAGAAGATCCGTCTGATGGACATGACAATGTATGGTGAAGTTATAC
GTGAATTGTATCGTTACAAACCTGGTCTTCAAACCATCAAAAGATTCAAT
GAATCAGCAACTTCAGATTCTGTCAGTTTGATGCCATCTGCGCCGAATAC
GGCACGCACTTCCCGCACCACATTATATGACTCAAGAGAAGAATTTCTTT
CAGATTGAATACTAATGTTTTGTGGACTAACAACAATTTAAAACATAATT
GTTTTTTGGAATATTATTGACCTTGTTTCAGTTTTTACTTATCATCGT Coding sequence (CDS) from alignment at sc0000753:65109..68856+ >TCONS_00029530 ID=TCONS_00029530|Name=TCONS_00029530|organism=Clytia hemisphaerica|type=CDS|length=4500bp|location=Sequence derived from alignment at sc0000753:65109..68856+ (Clytia hemisphaerica)
AACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAAGA
GACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAGAC
TCAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATGGT
GTAACAAAAGCAGGTCAGCTCTGTTCAATGCTCGACCGTGCTGGTGGTAA
GAATATAGCATGTAATGAGATGACGAAACGATACTTCCTTCATTACCAAT
GGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTACTTCTTCCCTTAC
CTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATTGGTGGATCTAGT
GCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCAATAATTActtca
attataaaatcaaCTCTAAACTTAAGATGAGGATTATCATCTGGTTCAAT
TTGGTCCTGAAGTTTCTTTACATCGGTATCAACTTTGCTGGCTTCTTTCT
GACCGATTTCACAATGGATAGCCTTTTCATCGACTACGGTGCCGCTTGGT
GGGAATGGAATAAAGTACCTAACTCTATTGCGCATGACATTGTGAAGACT
GGTATACCAAAGCCTGGAGATCGGTTTTTACCTTCTGTTGGTATATGTGA
AGTACACGAAGCTTTGAATGATAAACGTGGAGTTTATATTGATAAACATA
AAGTAATTTGCGAAGTCAGTCAAAACATTCGATACCAATACATTTTCATT
ATCCTCTGGTTCTTCTTTGCAACTGGTGTTCTCATTTCAACCCTGGGGCT
ATTCCACTTAATTTACTCCACCCTCAAAGCAATGTTTGTAGTGTACAATC
CGACATGCTATGAAGAAGAACTACGTGAGAGAATCAGTGAACAGCTCACA
TTACGAGAAATTGAATACCTTGAGAAGATCCGTCTGATGGACATGACAAT
GTATGGTGAAGTTATACGTGAATTGTATCGTTACAAACCTGGTCTTCAAA
CCATCAAAAGATTCAATGAATCAGCAACTTCAGATTCTGTCAGTTTGATG
CCATCTGCGCCGAATACGGCACGCACTTCCCGCACCACATTATATGACTC
AAGAGAAGAATTTCTTTCAGATTGAAACTGCATGGTTTCTGCACGATTAC
ACGAACTTAAGGAGTTTGTACAAGAGACCTGTTGGATTCAAGGATTTTAC
ATCTACCAAGAAATGCATACCAGACTCAACGAATCTTCGTATTACGGGAT
ACCTGAATACAATGGTTATGATGGTGTAACAAAAGCAGGTCAGCTCTGTT
CAATGCTCGACCGTGCTGGTGGTAAGAATATAGCATGTAATGAGATGACG
AAACGATACTTCCTTCATTACCAATGGCTACCTTTCTTTGTCTGCAGTAT
GGCTATCCTCTACTTCTTCCCTTACCTTATTTTCCGTGCTGGGAACAGTG
ATATTATCTCATTGGTGGATCTAGTGCTCACTGGTAACATGAAAGATGTT
GACAAACTTGTCAATAATTActtcaattataaaatcaaCTCTAAACTTAA
GATGAGGATTATCATCTGGTTCAATTTGGTCCTGAAGTTTCTTTACATCG
GTATCAACTTTGCTGGCTTCTTTCTGACCGATTTCACAATGGATAGCCTT
TTCATCGACTACGGTGCCGCTTGGTGGGAATGGAATAAAGTACCTAACTC
TATTGCGCATGACATTGTGAAGACTGGTATACCAAAGCCTGGAGATCGGT
TTTTACCTTCTGTTGGTATATGTGAAGTACACGAAGCTTTGAATGATAAA
CGTGGAGTTTATATTGATAAACATAAAGTAATTTGCGAAGTCAGTCAAAA
CATTCGATACCAATACATTTTCATTATCCTCTGGTTCTTCTTTGCAACTG
GTGTTCTCATTTCAACCCTGGGGCTATTCCACTTAATTTACTCCACCCTC
AAAGCAATGTTTGTAGTGTACAATCCGACATGCTATGAAGAAGAACTACG
TGAGAGAATCAGTGAACAGCTCACATTACGAGAAATTGAATACCTTGAGA
AGATCCGTCTGATGGACATGACAATGTATGGTGAAGTTATACGTGAATTG
TATCGTTACAAACCTGGTCTTCAAACCATCAAAAGATTCAATGAATCAGC
AACTTCAGATTCTGTCAGTTTGATGCCATCTGCGCCGAATACGGCACGCA
CTTCCCGCACCACATTATATGACTCAAGAGAAGAATTTCTTTCAGATTGA
AACTGCATGGTTTCTGCACGATTACACGAACTTAAGGAGTTTGTACAAGA
GACCTGTTGGATTCAAGGATTTTACATCTACCAAGAAATGCATACCAGAC
TCAACGAATCTTCGTATTACGGGATACCTGAATACAATGGTTATGATGGT
GTAACAAAAGCAGGTCAGCTCTGTTCAATGCTCGACCGTGCTGGTGGTAA
GAATATAGCATGTAATGAGATGACGAAACGATACTTCCTTCATTACCAAT
GGCTACCTTTCTTTGTCTGCAGTATGGCTATCCTCTACTTCTTCCCTTAC
CTTATTTTCCGTGCTGGGAACAGTGATATTATCTCATTGGTGGATCTAGT
GCTCACTGGTAACATGAAAGATGTTGACAAACTTGTCAATAATTActtca
attataaaatcaaCTCTAAACTTAAGATGAGGATTATCATCTGGTTCAAT
TTGGTCCTGAAGTTTCTTTACATCGGTATCAACTTTGCTGGCTTCTTTCT
GACCGATTTCACAATGGATAGCCTTTTCATCGACTACGGTGCCGCTTGGT
GGGAATGGAATAAAGTACCTAACTCTATTGCGCATGACATTGTGAAGACT
GGTATACCAAAGCCTGGAGATCGGTTTTTACCTTCTGTTGGTATATGTGA
AGTACACGAAGCTTTGAATGATAAACGTGGAGTTTATATTGATAAACATA
AAGTAATTTGCGAAGTCAGTCAAAACATTCGATACCAATACATTTTCATT
ATCCTCTGGTTCTTCTTTGCAACTGGTGTTCTCATTTCAACCCTGGGGCT
ATTCCACTTAATTTACTCCACCCTCAAAGCAATGTTTGTAGTGTACAATC
CGACATGCTATGAAGAAGAACTACGTGAGAGAATCAGTGAACAGCTCACA
TTACGAGAAATTGAATACCTTGAGAAGATCCGTCTGATGGACATGACAAT
GTATGGTGAAGTTATACGTGAATTGTATCGTTACAAACCTGGTCTTCAAA
CCATCAAAAGATTCAATGAATCAGCAACTTCAGATTCTGTCAGTTTGATG
CCATCTGCGCCGAATACGGCACGCACTTCCCGCACCACATTATATGACTC
AAGAGAAGAATTTCTTTCAGATTGAAACTGCATGGTTTCTGCACGATTAC
ACGAACTTAAGGAGTTTGTACAAGAGACCTGTTGGATTCAAGGATTTTAC
ATCTACCAAGAAATGCATACCAGACTCAACGAATCTTCGTATTACGGGAT
ACCTGAATACAATGGTTATGATGGTGTAACAAAAGCAGGTCAGCTCTGTT
CAATGCTCGACCGTGCTGGTGGTAAGAATATAGCATGTAATGAGATGACG
AAACGATACTTCCTTCATTACCAATGGCTACCTTTCTTTGTCTGCAGTAT
GGCTATCCTCTACTTCTTCCCTTACCTTATTTTCCGTGCTGGGAACAGTG
ATATTATCTCATTGGTGGATCTAGTGCTCACTGGTAACATGAAAGATGTT
GACAAACTTGTCAATAATTActtcaattataaaatcaaCTCTAAACTTAA
GATGAGGATTATCATCTGGTTCAATTTGGTCCTGAAGTTTCTTTACATCG
GTATCAACTTTGCTGGCTTCTTTCTGACCGATTTCACAATGGATAGCCTT
TTCATCGACTACGGTGCCGCTTGGTGGGAATGGAATAAAGTACCTAACTC
TATTGCGCATGACATTGTGAAGACTGGTATACCAAAGCCTGGAGATCGGT
TTTTACCTTCTGTTGGTATATGTGAAGTACACGAAGCTTTGAATGATAAA
CGTGGAGTTTATATTGATAAACATAAAGTAATTTGCGAAGTCAGTCAAAA
CATTCGATACCAATACATTTTCATTATCCTCTGGTTCTTCTTTGCAACTG
GTGTTCTCATTTCAACCCTGGGGCTATTCCACTTAATTTACTCCACCCTC
AAAGCAATGTTTGTAGTGTACAATCCGACATGCTATGAAGAAGAACTACG
TGAGAGAATCAGTGAACAGCTCACATTACGAGAAATTGAATACCTTGAGA
AGATCCGTCTGATGGACATGACAATGTATGGTGAAGTTATACGTGAATTG
TATCGTTACAAACCTGGTCTTCAAACCATCAAAAGATTCAATGAATCAGC
AACTTCAGATTCTGTCAGTTTGATGCCATCTGCGCCGAATACGGCACGCA
CTTCCCGCACCACATTATATGACTCAAGAGAAGAATTTCTTTCAGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029530-exon-sc0000753-1491911889:65109..65273 | TCONS_00029530-exon-sc0000753-1491911889:65109..65273 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1510915933:65109..65273 | TCONS_00029530-exon-sc0000753-1510915933:65109..65273 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1575043694:65109..65273 | TCONS_00029530-exon-sc0000753-1575043694:65109..65273 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1491911889:65836..66134 | TCONS_00029530-exon-sc0000753-1491911889:65836..66134 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1510915933:65836..66134 | TCONS_00029530-exon-sc0000753-1510915933:65836..66134 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1575043694:65836..66134 | TCONS_00029530-exon-sc0000753-1575043694:65836..66134 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1491911889:67612..67844 | TCONS_00029530-exon-sc0000753-1491911889:67612..67844 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1510915933:67612..67844 | TCONS_00029530-exon-sc0000753-1510915933:67612..67844 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1575043694:67612..67844 | TCONS_00029530-exon-sc0000753-1575043694:67612..67844 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1491911889:68337..68856 | TCONS_00029530-exon-sc0000753-1491911889:68337..68856 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1510915933:68337..68856 | TCONS_00029530-exon-sc0000753-1510915933:68337..68856 | Clytia hemisphaerica | exon |
| TCONS_00029530-exon-sc0000753-1575043694:68337..68856 | TCONS_00029530-exon-sc0000753-1575043694:68337..68856 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000753 | supercontig | sc0000753:65109..68856 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
|
