TCONS_00029495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029495
Unique NameTCONS_00029495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2185

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029495 ID=TCONS_00029495|Name=TCONS_00029495|organism=Clytia hemisphaerica|type=transcript|length=2185bp
TTCCTTTTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGA
TGCCTAGGCTAAGACAATTAACAAACTATATGGGAGCTGCAGGACTTCAC
TGGATTTGTAGTGTTCCGATTGGAATCACAATCTCCTTAATCGGTTTAAT
CGGGAACGTTATCTCCGTCATAATTTGGTTCCACTTAAACCAATCCAAGT
CAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTGC
GATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTCT
GGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGGT
TTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTA
GTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGACCAAGGT
CCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCG
CACTATTCGCTTTCCTCGTCAATTTGCCGCACTTCTTTACGTACCACGCC
GTCAAAGACGGGGAAAACGGCGACTATAAGATTACACATACGGAATACGG
GGCCTCGGAAGCATCCACTAATTACGAATTTTGGGCTCATTGCATAGCTC
TTGTTTTGGGACCATGGATCGTCATTGCGATCTTGAATGGTTTGataatc
aagattttgaaaaaccaaATGAAGAAGTTTACTAAAGAAAAACCCACCAA
GCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCACGT
TTTCCTTCCTCAtacttttggcttggcagtgcGTTACTCAATGTTTTTGG
ATGCTTGGATATGGGAAAGgtcACGCAAACCAAAACATATGGACAACAGT
TGATAAATCATTCGCTTTCGCAAAGCTTGGTGTTATCATCAATTCTTCTA
TCAACTGGATCTTCTATTGTTTTACGTGTTCTCTGTTCAGGAAAGAAACA
CGCAAATTTTTGGGTCTTCGAAAGTCTGGAAACAATCATGATCGATCATC
CAATTTCTCGTCTTCCATCACGAAATCAAGTTCACTTGGCAAACCAGAAT
CGTGTATGATTATTGCAAATACTGGTGtttgatgtttgaaaataaataat
atattaAAATGCAAGCCAAGCCAAGGTTAGGCCTGAAGCTATTTATGCAG
TTCTTAATCTATGATGTGAGCTTTTCGCAGGTTCTCTGCAAAGTTACTAG
CGAACATATCACCACAAACCGGGATTTTTCGTTCCCTTTCTTGGTGAGCT
CCACTTTATTGACTATCGAAAAAAAGCCTTTCAAGTGTCCTGCGACGCAA
AATCTATTTTTTCGCTACTACAAGAGCTCTAAAGTTAGAAAAGTGACATT
AGAGAAAGAAAAAGTCGCAAATTTGAATAGATGTTACTGCGTAGAAGAAA
AGCGGTGACATCTAGTATAGACTACGTGCAAAATGGCACGAAATTCATGA
CGTTAAATTGCTGTAACTCACGTCGTAGATTTTTGAAAGGAACTacgaaa
atttttgaccaacGAGTACAAGCCTGTAATAAATTTTGCGTCCTAAATAG
TTTCATGCTAAACCTTGCTTTTACATAGTTTGACTAAATGTGATATTATA
AAAGACTCATGACAGAGGTGACACCCTTTAGATATATGATTCATTTTTAC
AGACAAACCTCGCTAATTCGAATATCTactttttctatattttgaactaa
aatcttgttttttcggctaaacaaaatattttccacgtaattcgaatctt
tctctgaAGCGATAGATTCTAATCTAATTTGAGACTCTTTTGTGTTCTTA
AAAACGTTTAAAGTTAGTTTTGCCGTTATGCCGAGAATTAGTCTCAGTCC
CTGTCAAGGAGAAATCTTTGTAAAAATGCCTTCTTTGATTCGAATCTTTC
CGTATATTGTTATTATCTTTCCGTATTTTTCCCTACTGCAAGAACTTCAA
AACCTGGGCTCCAAGATTCGAAAAAgttgcaaagtggaatagacgttaat
ggCGTAAAAAAAACGCGGTTGACGTCTAGAATAGGCTAGAATCAACTGAA
ATTAATTTCGAACCCAATTGGCGCCCGATGAAAAAGGTTTTGGAATCCGT
CAAACTTTCTTTCAAGCGGTTTTAATTAATATGGC
Run BLAST on NCBI

protein sequence of TCONS_00029495-protein

>TCONS_00029495-protein ID=TCONS_00029495-protein|Name=TCONS_00029495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MPRLRQLTNYMGAAGLHWICSVPIGITISLIGLIGNVISVIIWFHLNQSK
SRRNKSTAQYFISLAFCDSALLLFFLLHDSLPSLVSTIKSNYYYAATWCW
FLFPMFFFALVCSIWVVVGVTINRYIMIAFPTKVQIIYSDTRSKIGIFGI
ALFAFLVNLPHFFTYHAVKDGENGDYKITHTEYGASEASTNYEFWAHCIA
LVLGPWIVIAILNGLIIKILKNQMKKFTKEKPTKQMRQEQQMTRTLLFIT
FSFLILLAWQCVTQCFWMLGYGKGHANQNIWTTVDKSFAFAKLGVIINSS
INWIFYCFTCSLFRKETRKFLGLRKSGNNHDRSSNFSSSITKSSSLGKPE
SCMIIANTGV
Run BLAST on NCBI

transcript from alignment at sc0000752:4459..11783-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029495 ID=TCONS_00029495|Name=TCONS_00029495|organism=Clytia hemisphaerica|type=transcript|length=7325bp|location=Sequence derived from alignment at sc0000752:4459..11783- (Clytia hemisphaerica)
TTCCTTTTTTGAATGTGTACCATATTGTAGATCTTAAAAGAAACTACTGA TGCCTAGGCTAAGACAATTAACAAACTGTAGGTATTGCAGGAGGGGGAAA TTTGTAAAATCGTTCGACTTTTTTAGTCAAATCACTTGCAAGATATCTCT AATGTTCTTAATTTTTTTGAGAGCTTTCTGAAAATATACAACAGGTCTCC GTTTTCTCAAGCCAAAATTTTCATTAATTTTTCACCCTATAATTTTTGCC TGAGACCGTCGTATTTGTCCGAAAAAAAAATTGGCAACCAGGTTGTTTTG ATTCCCCTACCCCTTAGCTTTCCTAAAATGTATAACAAGTGACTAACTTT GACTAAAAAAATCGAGCGACCTCAAAAAAACGAACAAATTTCCCTTTACT ATTTTAATTAGAAGAGAGTATTTCGTAGTTTTTTCTTTTTCAGATTCTTT TTTAATTATTTTTTGTCCTCAGTAGCCAGAGCAGCGTAGGCAGGTCTTTT TTTCTAATTGCAACGAGAAATCTCACAGTTGGATGGAGGTATTTTTTAAA TTATGAAAGAGCCTTTGCTAAGGTCTTTTTTTGCCTTTGGTTTAATAAAC CTTTCCGACCGTAGCCANTGAAAGAGCCTTTGCTAAGGTCTTTTTTTGCC TTTGGTTTAATACACCTTTCCGACCGTAGCCGCCGCGCGTGCATTTTTTT GTCCATTTTACCACATTAAAACCGTCCCAGTCTTTTTTCGCACCAATAGA CAATAGAAAAAGCTGTAAAAAAGGATTGGATCGAGCTTAAGGTGACTAAT TAATTAATAAAATGGCACGCACCTGACCGCGCGACTACGGTCGAAAAGGT GTATTCCCAAAAGAGTGCTAAATCATAAAAAATGATTACTGCTAAAATAT CATGTACTAAAAACAGGAATCCTATGAAATAGAGTAATAACGTTAAGTGC ACTGGGTTATTACTTCTCAGCCAAAAAAACCTCACCCGTACCCAGAGCCA CTTTCACTGCTCTTTGATTTCACTAACAAACCTTTCGTAAGCACTATCAG AATAATAAAACAATAAAAAAAACTAAGGGACCAAGTTTAGTTCATGAATT TTCTACAAACTATTCAATTAATAGCTTTAATATCATTTTGCTTTTTGGAT CCGAGAAATGTTTCCCGGTCAAATTGTTGAAAAAGATCCATTCTTTTGTA AAGTAACTTTTTCAGAAATTATCTTTAAAGGGGGTAATCATTGAACTCCC GGGGGGTACTACCCTTGTCGACCGACGGGAGTGCTTCGCTGAGGTTCGAA AAATTGACCCTACGTTGGACTCAAAATTTGCGAAAAAAGTGACCCTGAAT GGGACTGAAATTCCAAAATTTTCTAAAATTTTCTACTTTTTCCCCAAATT TTCCAAAATAAGGCACCCGACTGATTTTTCTATTTTGGTGTTTTTGCGAC CCTACCTGGGACTCGTGGAGGTTAAAAAAGGTACCCTGACCAGCGGAGCA TCCCCGTAACCCATCTTGCCCTAGTATCCCCCCTGGGATTGAACTTCATT TCTCAAAACAGGGATTTTAGGATCCGTGACCTCGAGGTGATTCCACTTTC ATAAATTTTTGTCAATCTAACTGAACATTCAGTTGCTAGTTGTCCATCAC ACGCTTCTTTTTCCATAGGAACATAAATATATGAACATAAGGCGTACTCT TTGTGTGCTTTATTGTAGGGGGGGGGTCATTTTACAATTTTTGGAAAAAA TCACCCTCATATCACTTTATAATGACCCCCCCCCATTTTATGACCTTTAT GCTACGAAGTGCCAAAATTGGCCAAAACCGCCAAAACCCTTCATTTTCCT AGGGATTTTTAGCATAATGGTATAATAAGGTCAATAGCACTTAATGTAGA TTTTTATCTGGAGTACATACCCACCCCCTGCTTATTCCACCCCCTAAAAT TAACACAAGAGTACCCTGTCAGAAGATTAGGCATTTCGGACACATCCCAA TAAGAAAGGAACATTCGAAGGCTTCTTATAAAAAAAGTGTAGTAGAACAG AAAACCTAACAGAAGAGGTTTNAGCTGGCTTAAAATACGATGAAGTCAAA ATTAAAGGGAAAAATTCTCTTCAAAGTTTGACTCTGTCCCTCCCAGGTCA CGTATCTTTTAACCATATTTTGAAAAGATTTTTAAATTGTTGCAAAAATG ATCAGAAAGGGCGTTATTCAAACTATACCATACCGGCGACCTGCGACGTC CGACGTCTGAAAAGGCTTTGCAATTAGATTTTTTTCTCGCTTCGCTCGCT TTACATTTGCCGTACTGNAATAGACAATAGAAAAAGCTGTAAAAAAGGAT TGGATCGAGCTTAAGGTGACTAATTAATTAATAAAATGGCACGCACCTGA CCGCGCGACTACGGTCAAAAAGGTGTATTCCCAAAAGAGTGCTAAATCAT AAAAAATGATTACTGCTAAAATATCATGTACTAAAAACACGAATCCTATG AAACAGAGTAATAACGTTATGTGCATTGGGTTATTACTTCTCAGCCAAAA AAAACCCACCCGTACCCAGAGCTACTTTCACTGCTTTTTGATTTCACTAA CAGACCTTTCGTAAGCACTATCAGAATAATAAAACAATAAAAAAAACTAA GGGACCAAGTTTAGTTCATGAGTTTTCTACAAACTATTCAATAGCTTTAA TATCATTTTGCTTTTTGGATCCGAGAAATGTTTCCCGGTCAAATTGCTGA AAAAGATCCATTCTTTTGTAAAGTAACTTTTTCAGAAATTATCTTTAAAG GGGGTAATCATTGAACTTCATTTCTCAAAACAGGGATTCGTGACCTCGAG GTGAATCACTTTCATAAATTTTTGTCAATATAACTGAACATTCAGTTGCT AGTTGTCCATCGCACGCTTCTTTTTCCATAGGAACAAAAATATATGAGCA TAAGGCGTACTCTTTGTGTGCTTGATTATAGGGGGCGCTCATTTTACAGT TTTTGGAAAAAAATCACCCTCATATCGCTACGAAGCACCAAAATTGGCCA AAACCCTTCATTTTCCTAGGGATTTTTAGCATAATGGTATAATAAGGTCA ATAGCACTTAATTATGACCCCCCCATTTTTTAAATTTTTATCTGGAGTAC CCACCCCCTGCTTATTCCATCCCCTACAATTAATACAAGAGTACCCTGTC AGAAGATTAGAGGCATTTCGGTCACATCCCAATAAAAAGGAACATTCGAA GGCTTCTTATAAAAAAAGTGTAGTAGAACAGAAAACCTAACAGAAAAGGT TTTTTCTGATTTTCTTTTCCATTTTCATTCAACAGATATGGGAGCTGCAG GACTTCACTGGATTTGTAGTGTTCCGATTGGAATCACAATCTCCTTAATC GGTTTAATCGGGAACGTTATCTCCGTCATAATTTGGTTCCACTTAAACCA ATCCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAG CATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTA CCAAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATG GTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCT GGGTCGTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCG ACCAAGGTAAAAGTTTAGAATTTAATCTCGCAAGGTTGCGGGTTCAACCC CCAGCCGGGTCATACTAAAAATTCTCAAAATGGTACTTGATGCCTCTCTG TTTGATTCTCAGCAATTAAGAGAAGGGTAAGGGGAGCAATCCAGGGAGAA AGAGTGGCACCTTTGGATAGATAGCTATCGAAAGAGGAGCCTTCGGGTCG CCTCCGACTGCGGTCACAGACTTAAAAATTATACATACCCCTTTCACAGC TGATTGTGAGTGGTTGCAATTGACATGTTTGGGCCAGTACAACGGTGTAT TATACACTTCTGAGTGCTTCGATACGTATAAAAGCGAAACAAAATCCTAT ACTCAATTTAGTAGCACTCAGTCCTTATCGGTCATTAAACTGTCACAGGA TCGCATAATAAAGTAAAGTCTTGATGACTCGAACCTATACAACTTGAATA TCTCCTAGCTCGAACAAGTTAGCTGGCCCCTTCAGTTAGCAATGGATTTC TCAGCTGGCACATAACGTTGTTTCAACGTTTATCTAACATTCACAACGTC CATATAACGTTAGATGAACGTTGAAACAACGTTATGAGTTATTGAGACTC CACTGTATAAGAATTTATCTTATTGATTTTATAGGTCCAGATTATTTACT CAGATACCCGTTCTAAAATCGGAATTTTCGGCATCGCACTATTCGCTTTC CTCGTCAATTTGCCGCACTTCTTTACGTACCACGCCGTCAAAGACGGGGA AAACGGCGACTATAAGATTACACATACGGAATACGGGGCCTCGGAAGCAT CCACTAATTACGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCA TGGATCGTCATTGCGATCTTGAATGGTTTGATAATCAAGATTTTGAAAAA CCAAATGAAGAAGTTTACTAAAGAAAAACGTAAGTATCAAAAGCAGTTTA CGCAAGCCATTTTAAGAATAAGATATTGGTCAGTCAAATCTAATGTAACT ATGATCTAATAAAAAATTAGCTATGAATTCTTTCAACTTTACTCTTCTAA AGGTTACTTGATTAAAAAACAACCCGAATTTAGTCAAAAAGTTCCATAAT AATGTTATACCCTCTAAAACTTGGTTCAGCCTCAGCTAAACTGTCATATT TTCAGACTTCGCAATTTTCAGTTTCATGATNTAAAGGGTACTTGATTAAA AAACAACCCGAATTTAGTCAAAAAGTTCCATAATAATGTTATACCCTCTA AAACTTGGTTCAGCCTCAGCTAAACTGTCATATTTTCAGACTTCGCAATT TTCAGTTTCATGATAATTCCTTGATTTGTAAATTAGGCCTCGTTTGTTAT AAAAGAGCCCCCCCCCCCCAGCGGACCTTCAATCCAAGCAATCACGCAAT ATGTTTTCGAAATTCACGCATTTACGCAACTTGTTTAAAATTTTCACACA TTCACGCATTCACGCATATGAAAAAGCTCAAACCACTGTGGACCCCTATA TAACAAGTTATTTATAAACATTATATAAACATTTTTTTAATTTTTAATTT TTCCAACTAGCCACCAAGCAAATGCGACAAGAGCAACAAATGACACGAAC TTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAGTGCG TTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTAAATACTATACC ACATGCATGTCGCACTACGGTACTGAGCTGTTAACATTTTACCACACTCT TAACACTTTGAATTATCTTTAGCTTCAAGTACTTTTGGGTACAAATCACT TTACTTAAAAAAGGTTTTTCGACAGTAGCCGTCAATTGCCGCGCGAGCAT TTTTTTGTGCGATTTAGGACCATAACACCGTCCCTGTCTTTTTTTCGCAC CTGTAAACAATAGAAAGAGGTGTAAAGAAAGATTGGATCGAGCTTAGGGT GGTAAAACGGACAAAAAATTCCTATGCAGCACTTGGCAGCTACGGTCGAA AAGGTGTATTAGCTCTCCTTATTCTTGGGAAATTTTGCTTAATTAGAAAA TAAATATCTAACATGTTAGCTTAACAACTCAAACAGGCTTTTTTTAGAAA GGGCAATTTTCCATGAACTGGAATAAAACAAAATAGCTACCACAGCATAG ATGATTCCAGGAAAGAGTTATAATCACGCTTCTTTTCATGAGACGTCAAA ACCCAAGCAACGGACAGTGAGAAAAGGGTACACTTCATCTATTGAAGAAG AAAAAAGGACATTTTTTCATAAATCATATAAATCTTTTTTTATTTATTTT TTATTTTAGGTCACGCAAACCAAAACATATGGACAACAGTTGATAAATCA TTCGCTTTCGCAAAGCTTGGTGTTATCATCAATTCTTCTATCAACTGGAT CTTCTATTGTTTTACGTGTTCTCTGTTCAGGAAAGAAACACGCAAATTTT TGGGTCTTCGAAAGTCTGGAAACAATCATGATCGATCATCCAATTTCTCG TCTTCCATCACGAAATCAAGTTCACTTGGCAAACCAGAATCGTGTATGAT TATTGCAAATACTGGTGTTTGATGTTTGAAAATAAATAATATATTAAAAT GCAAGCCAAGCCAAGGTTAGGCCTGAAGCTATTTATGCAGTTCTTAATCT ATGATGTGAGCTTTTCGCAGGTTCTCTGCAAAGTTACTAGCGAACATATC ACCACAAACCGGGATTTTTCGTTCCCTTTCTTGGTGAGCTCCACTTTATT GACTATCGAAAAAAAGCCTTTCAAGTGTCCTGCGACGCAAAATCTATTTT TTCGCTACTACAAGAGCTCTAAAGTTAGAAAAGTGACATTAGAGAAAGAA AAAGTCGCAAATTTGAATAGATGTTACTGCGTAGAAGAAAAGCGGTGACA TCTAGTATAGACTACGTGCAAAATGGCACGAAATTCATGACGTTAAATTG CTGTAACTCACGTCGTAGATTTTTGAAAGGAACTACGAAAATTTTTGACC AACGAGTACAAGCCTGTAATAAATTTTGCGTCCTAAATAGTTTCATGCTA AACCTTGCTTTTACATAGTTTGACTAAATGTGATATTATAAAAGACTCAT GACAGAGGTGACACCCTTTAGATATATGATTCATTTTTACAGACAAACCT CGCTAATTCGAATATCTACTTTTTCTATATTTTGAACTAAAATCTTGTTT TTTCGGCTAAACAAAATATTTTCCACGTAATTCGAATCTTTCTCTGAAGC GATAGATTCTAATCTAATTTGAGACTCTTTTGTGTTCTTAAAAACGTTTA AAGTTAGTTTTGCCGTTATGCCGAGAATTAGTCTCAGTCCCTGTCAAGGA GAAATCTTTGTAAAAATGCCTTCTTTGATTCGAATCTTTCCGTATATTGT TATTATCTTTCCGTATTTTTCCCTACTGCAAGAACTTCAAAACCTGGGCT CCAAGATTCGAAAAAGTTGCAAAGTGGAATAGACGTTAATGGCGTAAAAA AAACGCGGTTGACGTCTAGAATAGGCTAGAATCAACTGAAATTAATTTCG AACCCAATTGGCGCCCGATGAAAAAGGTTTTGGAATCCGTCAAACTTTCT TTCAAGCGGTTTTAATTAATATGGC

Coding sequence (CDS) from alignment at sc0000752:4459..11783-

>TCONS_00029495 ID=TCONS_00029495|Name=TCONS_00029495|organism=Clytia hemisphaerica|type=CDS|length=5415bp|location=Sequence derived from alignment at sc0000752:4459..11783- (Clytia hemisphaerica)
GTCACGCAAACCAAAACATATGGACAACAGTTGATAAATCATTCGCTTTC
GCAAAGCTTGGTGTTATCATCAATTCTTCTATCAACTGGATCTTCTATTG
TTTTACGTGTTCTCTGTTCAGGAAAGAAACACGCAAATTTTTGGGTCTTC
GAAAGTCTGGAAACAATCATGATCGATCATCCAATTTCTCGTCTTCCATC
ACGAAATCAAGTTCACTTGGCAAACCAGAATCGTGTATGATTATTGCAAA
TACTGGTGTTTGACCACCAAGCAAATGCGACAAGAGCAACAAATGACACG
AACTTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAGT
GCGTTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTCCAGATTAT
TTACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCGCACTATTCG
CTTTCCTCGTCAATTTGCCGCACTTCTTTACGTACCACGCCGTCAAAGAC
GGGGAAAACGGCGACTATAAGATTACACATACGGAATACGGGGCCTCGGA
AGCATCCACTAATTACGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGG
GACCATGGATCGTCATTGCGATCTTGAATGGTTTGATAATCAAGATTTTG
AAAAACCAAATGAAGAAGTTTACTAAAGAAAAACATATGGGAGCTGCAGG
ACTTCACTGGATTTGTAGTGTTCCGATTGGAATCACAATCTCCTTAATCG
GTTTAATCGGGAACGTTATCTCCGTCATAATTTGGTTCCACTTAAACCAA
TCCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGC
ATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTAC
CAAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGG
TGCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTG
GGTCGTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGA
CCAAGATGCCTAGGCTAAGACAATTAACAAACTGTCACGCAAACCAAAAC
ATATGGACAACAGTTGATAAATCATTCGCTTTCGCAAAGCTTGGTGTTAT
CATCAATTCTTCTATCAACTGGATCTTCTATTGTTTTACGTGTTCTCTGT
TCAGGAAAGAAACACGCAAATTTTTGGGTCTTCGAAAGTCTGGAAACAAT
CATGATCGATCATCCAATTTCTCGTCTTCCATCACGAAATCAAGTTCACT
TGGCAAACCAGAATCGTGTATGATTATTGCAAATACTGGTGTTTGACCAC
CAAGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCA
CGTTTTCCTTCCTCATACTTTTGGCTTGGCAGTGCGTTACTCAATGTTTT
TGGATGCTTGGATATGGGAAAGGTCCAGATTATTTACTCAGATACCCGTT
CTAAAATCGGAATTTTCGGCATCGCACTATTCGCTTTCCTCGTCAATTTG
CCGCACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAACGGCGACTA
TAAGATTACACATACGGAATACGGGGCCTCGGAAGCATCCACTAATTACG
AATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGATCGTCATT
GCGATCTTGAATGGTTTGATAATCAAGATTTTGAAAAACCAAATGAAGAA
GTTTACTAAAGAAAAACATATGGGAGCTGCAGGACTTCACTGGATTTGTA
GTGTTCCGATTGGAATCACAATCTCCTTAATCGGTTTAATCGGGAACGTT
ATCTCCGTCATAATTTGGTTCCACTTAAACCAATCCAAGTCAAGACGCAA
TAAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGTGCGT
TGCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTCTACC
ATCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTATTCCC
GATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGTGTCA
CCATCAATCGATACATCATGATTGCCTTTCCGACCAAGATGCCTAGGCTA
AGACAATTAACAAACTGTCACGCAAACCAAAACATATGGACAACAGTTGA
TAAATCATTCGCTTTCGCAAAGCTTGGTGTTATCATCAATTCTTCTATCA
ACTGGATCTTCTATTGTTTTACGTGTTCTCTGTTCAGGAAAGAAACACGC
AAATTTTTGGGTCTTCGAAAGTCTGGAAACAATCATGATCGATCATCCAA
TTTCTCGTCTTCCATCACGAAATCAAGTTCACTTGGCAAACCAGAATCGT
GTATGATTATTGCAAATACTGGTGTTTGACCACCAAGCAAATGCGACAAG
AGCAACAAATGACACGAACTTTGCTTTTCATCACGTTTTCCTTCCTCATA
CTTTTGGCTTGGCAGTGCGTTACTCAATGTTTTTGGATGCTTGGATATGG
GAAAGGTCCAGATTATTTACTCAGATACCCGTTCTAAAATCGGAATTTTC
GGCATCGCACTATTCGCTTTCCTCGTCAATTTGCCGCACTTCTTTACGTA
CCACGCCGTCAAAGACGGGGAAAACGGCGACTATAAGATTACACATACGG
AATACGGGGCCTCGGAAGCATCCACTAATTACGAATTTTGGGCTCATTGC
ATAGCTCTTGTTTTGGGACCATGGATCGTCATTGCGATCTTGAATGGTTT
GATAATCAAGATTTTGAAAAACCAAATGAAGAAGTTTACTAAAGAAAAAC
ATATGGGAGCTGCAGGACTTCACTGGATTTGTAGTGTTCCGATTGGAATC
ACAATCTCCTTAATCGGTTTAATCGGGAACGTTATCTCCGTCATAATTTG
GTTCCACTTAAACCAATCCAAGTCAAGACGCAATAAATCAACCGCTCAAT
ACTTTATCTCCTTAGCATTTTGCGATAGTGCGTTGCTGTTATTCTTTTTA
CTCCACGATTCATTACCAAGTCTGGTTTCTACCATCAAAAGCAATTATTA
TTACGCAGCAACATGGTGCTGGTTTCTATTCCCGATGTTCTTTTTCGCAT
TGGTGTGCAGTATCTGGGTCGTAGTTGGTGTCACCATCAATCGATACATC
ATGATTGCCTTTCCGACCAAGATGCCTAGGCTAAGACAATTAACAAACTG
TCACGCAAACCAAAACATATGGACAACAGTTGATAAATCATTCGCTTTCG
CAAAGCTTGGTGTTATCATCAATTCTTCTATCAACTGGATCTTCTATTGT
TTTACGTGTTCTCTGTTCAGGAAAGAAACACGCAAATTTTTGGGTCTTCG
AAAGTCTGGAAACAATCATGATCGATCATCCAATTTCTCGTCTTCCATCA
CGAAATCAAGTTCACTTGGCAAACCAGAATCGTGTATGATTATTGCAAAT
ACTGGTGTTTGACCACCAAGCAAATGCGACAAGAGCAACAAATGACACGA
ACTTTGCTTTTCATCACGTTTTCCTTCCTCATACTTTTGGCTTGGCAGTG
CGTTACTCAATGTTTTTGGATGCTTGGATATGGGAAAGGTCCAGATTATT
TACTCAGATACCCGTTCTAAAATCGGAATTTTCGGCATCGCACTATTCGC
TTTCCTCGTCAATTTGCCGCACTTCTTTACGTACCACGCCGTCAAAGACG
GGGAAAACGGCGACTATAAGATTACACATACGGAATACGGGGCCTCGGAA
GCATCCACTAATTACGAATTTTGGGCTCATTGCATAGCTCTTGTTTTGGG
ACCATGGATCGTCATTGCGATCTTGAATGGTTTGATAATCAAGATTTTGA
AAAACCAAATGAAGAAGTTTACTAAAGAAAAACATATGGGAGCTGCAGGA
CTTCACTGGATTTGTAGTGTTCCGATTGGAATCACAATCTCCTTAATCGG
TTTAATCGGGAACGTTATCTCCGTCATAATTTGGTTCCACTTAAACCAAT
CCAAGTCAAGACGCAATAAATCAACCGCTCAATACTTTATCTCCTTAGCA
TTTTGCGATAGTGCGTTGCTGTTATTCTTTTTACTCCACGATTCATTACC
AAGTCTGGTTTCTACCATCAAAAGCAATTATTATTACGCAGCAACATGGT
GCTGGTTTCTATTCCCGATGTTCTTTTTCGCATTGGTGTGCAGTATCTGG
GTCGTAGTTGGTGTCACCATCAATCGATACATCATGATTGCCTTTCCGAC
CAAGATGCCTAGGCTAAGACAATTAACAAACTGTCACGCAAACCAAAACA
TATGGACAACAGTTGATAAATCATTCGCTTTCGCAAAGCTTGGTGTTATC
ATCAATTCTTCTATCAACTGGATCTTCTATTGTTTTACGTGTTCTCTGTT
CAGGAAAGAAACACGCAAATTTTTGGGTCTTCGAAAGTCTGGAAACAATC
ATGATCGATCATCCAATTTCTCGTCTTCCATCACGAAATCAAGTTCACTT
GGCAAACCAGAATCGTGTATGATTATTGCAAATACTGGTGTTTGACCACC
AAGCAAATGCGACAAGAGCAACAAATGACACGAACTTTGCTTTTCATCAC
GTTTTCCTTCCTCATACTTTTGGCTTGGCAGTGCGTTACTCAATGTTTTT
GGATGCTTGGATATGGGAAAGGTCCAGATTATTTACTCAGATACCCGTTC
TAAAATCGGAATTTTCGGCATCGCACTATTCGCTTTCCTCGTCAATTTGC
CGCACTTCTTTACGTACCACGCCGTCAAAGACGGGGAAAACGGCGACTAT
AAGATTACACATACGGAATACGGGGCCTCGGAAGCATCCACTAATTACGA
ATTTTGGGCTCATTGCATAGCTCTTGTTTTGGGACCATGGATCGTCATTG
CGATCTTGAATGGTTTGATAATCAAGATTTTGAAAAACCAAATGAAGAAG
TTTACTAAAGAAAAACATATGGGAGCTGCAGGACTTCACTGGATTTGTAG
TGTTCCGATTGGAATCACAATCTCCTTAATCGGTTTAATCGGGAACGTTA
TCTCCGTCATAATTTGGTTCCACTTAAACCAATCCAAGTCAAGACGCAAT
AAATCAACCGCTCAATACTTTATCTCCTTAGCATTTTGCGATAGTGCGTT
GCTGTTATTCTTTTTACTCCACGATTCATTACCAAGTCTGGTTTCTACCA
TCAAAAGCAATTATTATTACGCAGCAACATGGTGCTGGTTTCTATTCCCG
ATGTTCTTTTTCGCATTGGTGTGCAGTATCTGGGTCGTAGTTGGTGTCAC
CATCAATCGATACATCATGATTGCCTTTCCGACCAAGATGCCTAGGCTAA
GACAATTAACAAACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016835XLOC_016835Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029495-exon-sc0000752-1575043694:11707..11783TCONS_00029495-exon-sc0000752-1575043694:11707..11783Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1575043694:8078..8448TCONS_00029495-exon-sc0000752-1575043694:8078..8448Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1575043694:7155..7449TCONS_00029495-exon-sc0000752-1575043694:7155..7449Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1575043694:6398..6523TCONS_00029495-exon-sc0000752-1575043694:6398..6523Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1575043694:4459..5774TCONS_00029495-exon-sc0000752-1575043694:4459..5774Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1510915933:11707..11783TCONS_00029495-exon-sc0000752-1510915933:11707..11783Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1510915933:8078..8448TCONS_00029495-exon-sc0000752-1510915933:8078..8448Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1510915933:7155..7449TCONS_00029495-exon-sc0000752-1510915933:7155..7449Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1510915933:6398..6523TCONS_00029495-exon-sc0000752-1510915933:6398..6523Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1510915933:4459..5774TCONS_00029495-exon-sc0000752-1510915933:4459..5774Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1491911889:11707..11783TCONS_00029495-exon-sc0000752-1491911889:11707..11783Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1491911889:8078..8448TCONS_00029495-exon-sc0000752-1491911889:8078..8448Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1491911889:7155..7449TCONS_00029495-exon-sc0000752-1491911889:7155..7449Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1491911889:6398..6523TCONS_00029495-exon-sc0000752-1491911889:6398..6523Clytia hemisphaericaexon
TCONS_00029495-exon-sc0000752-1491911889:4459..5774TCONS_00029495-exon-sc0000752-1491911889:4459..5774Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029495-proteinTCONS_00029495-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000752supercontigsc0000752:4459..11783 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107864 0 0 0 0 0 0.0482877 0.702432 2.16795 2.37032 3.86402 2.48437 0 0 1.16045 0.116669 1.09389 0.156893 0 0 1.14188 0 0.607019 0 0.486843 0 0.233383 0 0.000375085 0.244984
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top