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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029492 ID=TCONS_00029492|Name=TCONS_00029492|organism=Clytia hemisphaerica|type=transcript|length=1536bp
AAGAGGGCGGTCATGGTAAAATCTCGTATCTATCTAAAAATAGAAAGCAT
TGCGTAATGGTAGGCAAATGCAGTGATGTGATTGGCCTATCGCATTTATA
CCACTATCGAGTATTTCTATAAAGGTGAAGAGGGTGTAAGGCGTATCTAG
AAGGCGTCGAGGAATGGATTTCATGGGTTCTGGCTGGCTGGTTGTGTGGG
CCTGTGTGAATGGTGTATGTAGTACTGTGCAGTGGTGTGGTTATGTGGTC
TACCTTTGGCTTGGGGCCTTgggaattaaaaagaaatagatAAGAGCTTG
TACAGAGGACTTAACGACAACACCATTTTGATCTTTCCAGACGGAACTAA
GCTATTTTCAAACAACTGTTTATGGCTGCGCTATCTTTTTATACCAGGTA
TCATCAACATACAAAAAAGGTTTGCTCAACAACTTTCAGATCAATTTGTT
CTGACTGACTGGTCAAACTCTGCTCTGGTCAACTGGTAAAATTGCATAAT
GTAATTGAGCCAAATTGACCAATCATTGCTCTAAAAAACACTTTGAACTT
TGTTGAATGCTGAgcaaatttttggaaagatagactacagtcagggaaat
ccttCAATTGTGGTAGTAATTtcttactgcaattgcggtataaacgtcac
ttttaaatttttcatgtaccgcaattgcagtatactcaatcaagaaacag
aattcaagattcaaggagaaaacaggcaatttttgtacataattgatcat
atctttttaacgcacagacaaaatattttttccgtagNACAtgtacacct
ttcccgtaattcaaatttctcagaaatggcccgggaaaatgtgcgctcca
ccgttgtgtataaaattgtttgggaggtaaaaaacgcgtttttNcaaacg
gtggagagcatcaaaataatgcgcgcgcattagttttacgaattacggga
aaggtgtatttttgtacataattgatcatatctttttaacgcacagacaa
aatattttttgataaagaaaagctatcttctcgtacgattttttacagtc
gatgtttgtttatctttgtcgaccagcactatGTAGCTGTTATAAGCCTT
TCTAGGCTAATCACGATTGAAaactactgcaattgcagtataccgcaatt
gagggatttccctgactggaCTAACTAGCGGTAGCAAAGTTTTAAAGTTA
GTGTTATAAAGCTCTAGTAAGATAAAGGCATGTGAAAACATGACTTAGGT
TTTGCATCATTTCCAGACTGGTGAGGTATACAACAAAGGCTGGTACATGG
TAGATGTGTCTAGTCTGGTCTAGGATCTCACAGtctcaaaacaaaagtaa
caACAGTCCATGAAATTTACTTGCTTCTGAAAATAACCCCTCCAATTGCC
ACTTGAGGACAACCATTTTGTTTGGTCCCACTGGGTTTGGTCAAGCATTT
GTacataaaaatcagtttttcgaGAAGTGTTTTTATACATCTGATGATTG
CGTATGTAGCATGAAACTTTTAGTTATGTATTTTAC Run BLAST on NCBI transcript from alignment at sc0000752:62824..65063+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029492 ID=TCONS_00029492|Name=TCONS_00029492|organism=Clytia hemisphaerica|type=transcript|length=2240bp|location=Sequence derived from alignment at sc0000752:62824..65063+ (Clytia hemisphaerica)
AAGAGGGCGGTCATGGTAAAATCTCGTATCTATCTAAAAATAGAAAGCAT
TGCGTAATGGTAGGCAAATGCAGTGATGTGATTGGCCTATCGCATTTATA
CCACTATCGAGTATTTCTATAAAGGTGAAGAGGGTGTAAGGCGTATCTAG
AAGGCGTCGAGGAATGGATTTCATGGGTTCTGGCTGGCTGGTTGTGTGGG
CCTGTGTGAATGGTGTATGTAGTACTGTGCAGTGGTGTGGTTATGTGGTC
TACCTTTGGCTTGGGGCCTTgggaattaaaaagaaatagatAAGAGCTTG
TACAGAGGACTTAACGACAACACCATTTTGATCTTTCCAGACGGAACTAA
GCTATTTTCAAACAACTGTTTATGGCTGCGCTATCTTTTTATACCAGGTA
TCATCAACATACAAAAAAGGTTTGCTCAACAACTTTCAGATCAATTTGTT
CTGACTGACTGGTCAAACTCTGCTCTGGTCAACTGGTAAAATTGCATAAT
GTAATTGAGCCAAATTGACCAATCATTGCTCTAAAAAACACTTTGAACTT
TGTTGAATGCTGAgcaaatttttggaaagatagactacagtcagggaaat
ccttCAATTGTGGTAGTAATTtcttactgcaattgcggtataaacgtcac
ttttaaatttttcatgtaccgcaattgcagtatactcaatcaagaaacag
aattcaagattcaaggagaaaacaggcaatttttgtacataattgatcat
atctttttaacgcacagacaaaatattttttccgtagNACAtgtacacct
ttcccgtaattcaaatttctcagaaatggcccgggaaaatgtgcgctcca
ccgttgtgtataaaattgtttgggaggtaaaaaacgcgtttttNcaaacg
gtggagagcatcaaaataatgcgcgcgcattagttttacgaattacggga
aaggtgtatttttgtacataattgatcatatctttttaacgcacagacaa
aatattttttgataaagaaaagctatcttctcgtacgattttttacagtc
gatgtttgtttatctttgtcgaccagcactatGTAGCTGTTATAAGCCTT
TCTAGGCTAATCACGATTGAAaactactgcaattgcagtataccgcaatt
gagggatttccctgactggaCTAACTAGCGGTAGCAAAGTTTTAAAGTTA
GTGTTATAAAGCTCTAGTAAGATAAAGGCATGTGAAAACATGACTTAGGT
TTTGCATCATTTCCAGACTGGTGAGGTATACAACAAAGGCTGGTACATGG
TAGATGTGTCTAGTCTGGTCTAGGATCTCACAGtctcaaaacaaaagtaa
caACAGGTTTGCTATCATCATTtggttttttcttcatttagtCTCATAAT
TTAGTGTGTGTAAACGTTCATACCCTCCAAACCACAATCAGAAGAGTGCA
GAGCTGCATTTTTGATTCTAAGATCTCGAGATTTAAACACAATAGGTAAA
TGAAGTGACATCCCTGCAACTGAAACCATGACAAATAAACTTTTACTGTT
AgctatttaattttttgttttgatttcaaaaggcTAACACCAAGTTATAA
AATGATTCACCATTCACCATTGTGATTATTAAAAGGTCTATTACCATaat
ttggtctaatgtcgacatcccctATCCCTCCTGCtctaaattcgacaccc
ttttctagagctgaaaaattcgaaattcgaaatgtcgaaattattttatt
tgcttaGAAGTAAGaaagataaatctttttttcaatcaccgattcagact
ttcatattattcctatctttaaagaagggtgtcgaaattagaagacggat
tagaccaacttacggtattagAGAACCCACTGTCCGGTATGATACTTGCT
ATAGTAATTGCAGTTAATGTAAAATTCTTTGtctatttttaaacaaaata
ttgaGCCCAAACGATCACTCAGTACTCACCTGACAACATCTTCTGGAAAC
TTCCACATGACAAATGTTTGCATTATATTATAGCCAGCTTGCATATTTTG
TATCTTACAGTCCATGAAATTTACTTGCTTCTGAAAATAACCCCTCCAAT
TGCCACTTGAGGACAACCATTTTGTTTGGTCCCACTGGGTTTGGTCAAGC
ATTTGTacataaaaatcagtttttcgaGAAGTGTTTTTATACATCTGATG
ATTGCGTATGTAGCATGAAACTTTTAGTTATGTATTTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029492-exon-sc0000752-1491911889:62824..64179 | TCONS_00029492-exon-sc0000752-1491911889:62824..64179 | Clytia hemisphaerica | exon |
| TCONS_00029492-exon-sc0000752-1510915933:62824..64179 | TCONS_00029492-exon-sc0000752-1510915933:62824..64179 | Clytia hemisphaerica | exon |
| TCONS_00029492-exon-sc0000752-1575043694:62824..64179 | TCONS_00029492-exon-sc0000752-1575043694:62824..64179 | Clytia hemisphaerica | exon |
| TCONS_00029492-exon-sc0000752-1491911889:64884..65063 | TCONS_00029492-exon-sc0000752-1491911889:64884..65063 | Clytia hemisphaerica | exon |
| TCONS_00029492-exon-sc0000752-1510915933:64884..65063 | TCONS_00029492-exon-sc0000752-1510915933:64884..65063 | Clytia hemisphaerica | exon |
| TCONS_00029492-exon-sc0000752-1575043694:64884..65063 | TCONS_00029492-exon-sc0000752-1575043694:64884..65063 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000752 | supercontig | sc0000752:62824..65063 + |
Blast
The following BLAST results are available for this feature:
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