TCONS_00029488 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029488
Unique NameTCONS_00029488
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029488 ID=TCONS_00029488|Name=TCONS_00029488|organism=Clytia hemisphaerica|type=transcript|length=381bp
ATTTTTAGGCTACATCCAAATCAAACCAAGCAATTTAACGTCAAAACTTA
ACAACATTTTACCAAGTCTTTACAGTTGTGTTTTAGATACCATCATCGAG
AAcaattttcattatattttcttCACCAGTCTCCCTAAAACGTGGACCGC
GCTGCTAAGGTTGATAGNTGCACAGGAGTCTCAGCTCATCTCGTCTTGAA
TTCATTTGTGAAATGGTTGGATCGACTTCAGTGGCAGTCAAACCATTGAT
TGGTGTCTCATCGATTGCATCATTGATAGCTGCAATTAggactttgattt
tattgatggTGCTTTCATTTGTCGAAGGCATGATGGTTTCACGAAGTGAA
AGATTTGCAAGTTGACTGGAAAGATGGTCCT
Run BLAST on NCBI

transcript from alignment at sc0000749:72184..72564

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029488 ID=TCONS_00029488|Name=TCONS_00029488|organism=Clytia hemisphaerica|type=transcript|length=381bp|location=Sequence derived from alignment at sc0000749:72184..72564 (Clytia hemisphaerica)
AGGACCATCTTTCCAGTCAACTTGCAAATCTTTCACTTCGTGAAACCATC
ATGCCTTCGACAAATGAAAGCAccatcaataaaatcaaagtccTAATTGC
AGCTATCAATGATGCAATCGATGAGACACCAATCAATGGTTTGACTGCCA
CTGAAGTCGATCCAACCATTTCACAAATGAATTCAAGACGAGATGAGCTG
AGACTCCTGTGCANCTATCAACCTTAGCAGCGCGGTCCACGTTTTAGGGA
GACTGGTGaagaaaatataatgaaaattgTTCTCGATGATGGTATCTAAA
ACACAACTGTAAAGACTTGGTAAAATGTTGTTAAGTTTTGACGTTAAATT
GCTTGGTTTGATTTGGATGTAGCCTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016829XLOC_016829Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029488-exon-sc0000749-1491911889:72184..72564TCONS_00029488-exon-sc0000749-1491911889:72184..72564Clytia hemisphaericaexon
TCONS_00029488-exon-sc0000749-1510915933:72184..72564TCONS_00029488-exon-sc0000749-1510915933:72184..72564Clytia hemisphaericaexon
TCONS_00029488-exon-sc0000749-1575043694:72184..72564TCONS_00029488-exon-sc0000749-1575043694:72184..72564Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000749supercontigsc0000749:72184..72564 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.18629	2.16805	2.15062	0.749538	0.556322	0.439613	0.265187	1.48959	1.59002	2.09747	1.89143	1.81841	0.548724	0.427391	0	0.377287	0.588778	0	0	0	0	0.134507	0.2365	0	0.221459	0	0	0	0.228939	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029488 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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