TCONS_00029486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029486
Unique NameTCONS_00029486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length318

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029486 ID=TCONS_00029486|Name=TCONS_00029486|organism=Clytia hemisphaerica|type=transcript|length=318bp
CTTGTACTATGCTTTGTTTTTGTAACACCCCAATCTCGATGACTTTTTTA
CTCGCTCCATGGATAAAGGTTTCAAACTTTGTTTTCTAACAACTGAAATG
TCCATTGGCGATTGcttgtcattttagtttaatgccaTGAAAGGTCTGTG
TAGTTTTCCAACGGTCCATCAGTAAACACTTTAAACACTCCTTAATCTGA
CAATTCTCTCATTATAACAAAATTCTTTAAATGCTTGGAACTTGAACGTG
ACTTGAATCTTTGTGTTCCTAAATTGGTATTTGAACTTTGTACctcgaaa
aaactttttattatgCTT
Run BLAST on NCBI

transcript from alignment at sc0000749:53317..53634

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029486 ID=TCONS_00029486|Name=TCONS_00029486|organism=Clytia hemisphaerica|type=transcript|length=318bp|location=Sequence derived from alignment at sc0000749:53317..53634 (Clytia hemisphaerica)
AAGcataataaaaagttttttcgagGTACAAAGTTCAAATACCAATTTAG
GAACACAAAGATTCAAGTCACGTTCAAGTTCCAAGCATTTAAAGAATTTT
GTTATAATGAGAGAATTGTCAGATTAAGGAGTGTTTAAAGTGTTTACTGA
TGGACCGTTGGAAAACTACACAGACCTTTCAtggcattaaactaaaatga
caagCAATCGCCAATGGACATTTCAGTTGTTAGAAAACAAAGTTTGAAAC
CTTTATCCATGGAGCGAGTAAAAAAGTCATCGAGATTGGGGTGTTACAAA
AACAAAGCATAGTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016827XLOC_016827Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029486-exon-sc0000749-1491911889:53317..53634TCONS_00029486-exon-sc0000749-1491911889:53317..53634Clytia hemisphaericaexon
TCONS_00029486-exon-sc0000749-1510915933:53317..53634TCONS_00029486-exon-sc0000749-1510915933:53317..53634Clytia hemisphaericaexon
TCONS_00029486-exon-sc0000749-1575043694:53317..53634TCONS_00029486-exon-sc0000749-1575043694:53317..53634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000749supercontigsc0000749:53317..53634 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.325432	0.634695	0.368471	0.720983	0	0	0	0	0	0.339685	0.329707	0	0.216435	0	0	0	0.244301	0.500801	0	0	0	0.46042	0	0.339233	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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