TCONS_00029459 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029459
Unique NameTCONS_00029459
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length739

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029459 ID=TCONS_00029459|Name=TCONS_00029459|organism=Clytia hemisphaerica|type=transcript|length=739bp
CTGTTAATACTAAATGTATGGAGTGTGAGAAATTGGTGGAAAAGTATAAA
CGAGAAAGTGCCTTCTTGGTCGAGAAACTGAATGCTGGTGCTAAAGAGCG
TGAAGAAATGAAACAACGGAATGAATCTTTGGAGGCACGAATTAATGAAA
TGGCGTCATCAAATGATATGAGAGAAATCAAAACAAGTTTAACAGACATG
CAGAAAACATTTAACGAGATCAaaatgaaatcgaaaaattctaCTAACGT
TGAAAGTAAACTGACCGAAGATCTACAAACGGTGTATAGGAAAAATGATG
AATTGCTAAATCGTATAACAGGTTTAGAGAATCAGCTTTATcatgagaaa
gaaaatgttctgACTCTTCAAAAAGTGGTTAAAGAGAAAGAAACAGAGAT
CAATGATTTGGATACACAAATGGAAGAACATAAAAGCCAAGCCGAAATTA
ATGCTTCGCAAAGTGAACTTCACAATAACATGAATGAAAGTAAATACGAA
TCACAAatcgaaaatttaaaacttgaaaatgagattttacaATCCCGCGT
AATGATATTAGAAGGAATTAGTCATGAAATGGACATTTTAACGACCGAAc
gtaataatttgaaaaaagagaACACACAAATGAGACAGCGTCAATCGAGA
ACGGATAAAAGTGAAATGGTATTGGTCGCTAATATGGCAAACGATCCAGA
ATCAAAAGAGAAAGTGATACAAGAAATGTGCAAAGTCAG
Run BLAST on NCBI

transcript from alignment at sc0000748:89356..90094-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029459 ID=TCONS_00029459|Name=TCONS_00029459|organism=Clytia hemisphaerica|type=transcript|length=739bp|location=Sequence derived from alignment at sc0000748:89356..90094- (Clytia hemisphaerica)
CTGTTAATACTAAATGTATGGAGTGTGAGAAATTGGTGGAAAAGTATAAA
CGAGAAAGTGCCTTCTTGGTCGAGAAACTGAATGCTGGTGCTAAAGAGCG
TGAAGAAATGAAACAACGGAATGAATCTTTGGAGGCACGAATTAATGAAA
TGGCGTCATCAAATGATATGAGAGAAATCAAAACAAGTTTAACAGACATG
CAGAAAACATTTAACGAGATCAAAATGAAATCGAAAAATTCTACTAACGT
TGAAAGTAAACTGACCGAAGATCTACAAACGGTGTATAGGAAAAATGATG
AATTGCTAAATCGTATAACAGGTTTAGAGAATCAGCTTTATCATGAGAAA
GAAAATGTTCTGACTCTTCAAAAAGTGGTTAAAGAGAAAGAAACAGAGAT
CAATGATTTGGATACACAAATGGAAGAACATAAAAGCCAAGCCGAAATTA
ATGCTTCGCAAAGTGAACTTCACAATAACATGAATGAAAGTAAATACGAA
TCACAAATCGAAAATTTAAAACTTGAAAATGAGATTTTACAATCCCGCGT
AATGATATTAGAAGGAATTAGTCATGAAATGGACATTTTAACGACCGAAC
GTAATAATTTGAAAAAAGAGAACACACAAATGAGACAGCGTCAATCGAGA
ACGGATAAAAGTGAAATGGTATTGGTCGCTAATATGGCAAACGATCCAGA
ATCAAAAGAGAAAGTGATACAAGAAATGTGCAAAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016806XLOC_016806Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029459-exon-sc0000748-1575043694:89356..90094TCONS_00029459-exon-sc0000748-1575043694:89356..90094Clytia hemisphaericaexon
TCONS_00029459-exon-sc0000748-1510915933:89356..90094TCONS_00029459-exon-sc0000748-1510915933:89356..90094Clytia hemisphaericaexon
TCONS_00029459-exon-sc0000748-1491911889:89356..90094TCONS_00029459-exon-sc0000748-1491911889:89356..90094Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:89356..90094 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0.382908	0	0	0.266064	0	0.0407908	0.0295176	0.0515056	0.284631	0.115999	0	0.0947053	0	0	71.8278	43.0381	0.0917868	0	0.137443	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029459 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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