TCONS_00029449 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029449
Unique NameTCONS_00029449
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length906

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029449 ID=TCONS_00029449|Name=TCONS_00029449|organism=Clytia hemisphaerica|type=transcript|length=906bp
GGATTACATAAAGCGTTCAGACTAATTTGAGTTGCTTTTCACGTctagaa
aataaatatatctATCTTGAAGATCTTAATCACAAGACCGCAAAATGGCT
ACAGAAGCGAAAGACAAATTTTTCTCTGGCTACGAAGAGGCACGGCAAGC
GGGCAAAATAATCGATTATTACAACGATAAGGCAAGTGTGTACAACGAAG
CACTTGAACAAGCAGGATATACAGACACTACCCTATTTTGTTCCAATCTC
CTAAAGGAATATCTTTCTGCAGAAAGAGGTGAGAATAAGATTGCTGAGCT
GGAAATTCTCGATTTGGGTTGCGGTTCAGGATTAACAGGCGTTGCCTTAC
AGAAAGTTGGGTTCAAACTGATCGACGGTGTAGATCCAGCTGACAAAATG
TTACAGGTGGCAAGAGAGAAATCGGTGTATAGAAATCTCTCCAACGGTAT
CATCACAGATACAGAAAAATTGAGTTGCTTCCAAGACGAGTTGTATGATG
GCTTGTTATGTGGTGGATGTTTCACTGTGGGTCATATTAAGTTCAATAAC
GGTATGCCAGAAGTTCTGAGAGTTCTCAGAAAAGGTGGAGTAGCCGTCTA
TACCATTTCCTCTAAAATGGATAGCGCAGTAATTTTGAATGAACATATGC
CGTTTTTTCTTCGCAAGCAATGCGAGATGCTCCGCGTAGAGAAGAGATTT
TATTATTCAGGCAGCAACGATAAGAGTTATTGTGACGTGTATGTCATCAA
GAAGCTGTAAACTGTAAAATATAATACTTGGACAATTGTTTTTATATTCT
CTTTCTCTTTCATTTCGGGTGAAATTCTATTTCTCTCATACATGCCCTAT
TAGTGGATTAGAAATTGcgtgaaaaatacaaaagattcAACGATTTTTCT
CCTGTG
Run BLAST on NCBI

transcript from alignment at sc0000748:77468..82530-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029449 ID=TCONS_00029449|Name=TCONS_00029449|organism=Clytia hemisphaerica|type=transcript|length=5063bp|location=Sequence derived from alignment at sc0000748:77468..82530- (Clytia hemisphaerica)
GGATTACATAAAGCGTTCAGACTAATTTGAGTTGCTTTTCACGTCTAGAA
AATAAATATATCTATCTTGAAGATCTTAATCACAAGACCGCAAAATGGCT
ACAGAAGCGAAAGACAAATTTTTCTCTGGCTACGAAGAGGCACGGCAAGC
GGGCAAAATAATCGATTATTACAACGATAAGGCAAGTGTGTACAACGAAG
CACTTGAACAAGCAGGATATACAGACACTACCCTATTTTGTTCCAATCTC
CTAAAGGAATATCTTTCTGCAGAAAGAGGTGAGAACAAGATTGCTCAGCT
GGAAATTCTCGATTTGGGTTGCGGTTCAGGATTAACAGGCGTTGCCCTAC
AGAAAGTAGGGTTCAAACTGGTCGACGGTGTAGACCCAGCTGACAAAATG
TTACAGGTGGCAAGAGAGAAATCGGTGTATAGAAATCTCTCCAACGGTAT
CATCACAGATACAGAAAAATTGAGTTGCTTCCAAGACGAGTTGTATGATG
GCTTGTTATGTGGTGGATGTTTCACTGTGGGTCATATTAAGTTCAATAAC
GGTATGCCAGAAGTTCTGAGAGTTCTCAGAAAAGGTGGAGTAGCCGTCTA
TACCATTTCCTCTAAAATGGATAGCGCAGTAATTTTGAATGAACATATGC
CGTTTTTTCTTCGCAAGCAATGCGAGATGCTCCGCGTAGAGAAGAGATTT
TATTATTCAGGCAGCAACGATAAGAGTTATTGTGACGTGTATGTCATCAA
GAAGTTGTAAACTGTAAAATAGAATACTTGGAAATTGTTTTTAAATTCTC
TTTGCTTTTAGTTTTAATGCTTTTTTGTAGAAAATTATACTACGGATATG
ACTTTTTTTGTGTTGCTTTTTGTAATGCTAAATGAATTTAAAATACATTC
TGGGTGTTTTACCACTGACGGCTTAAGCTGACTGGGTTAATGTAACGTAA
CTTTTTCATAAAAGGATGAATAGCCCGAACTATTCATATAATTTTTGGAT
GAAAAGAGATGGTTGCACGTTAATTAAAAATAATTTCATCTCCCACAGCA
AATCTGTTGTATTTCCTGATCCGCATATCCTTGCTCTTTTATTCTCTCAT
ATATGCCCTCGACCATGTATTAATGGATTAGAAAATGTGTGAAAAATACA
AAAGATTCAACGATTTTACTCCTGTGTTGCTTTGGGAAATACAATATTTT
TCTGAAAAGAAAAAATTAACTTTCAACCATCTCTTTTCATCCAAAAATTA
TATGAATAGTTTGGGCTATTCAGGGGGGGGGTGGTTTGTAGGGGTTCGAA
ATACCGTTTTCCCGTCAAAATTTTTGCTGAATCCCGAAATCCCGAAAATT
GAAAAAATAATAACACCGTCACACCGGCTTGTACAGGGCAAAAATGTAAT
CCCGTCACACCGTAAAAGTACAAACCCCCCCCCTATTCATCCTTTTATGA
AAAAGTTACATTAACCCAGTTAGCTTCAATCAGCCGTCAGTGGAAAACAC
CCTCTCCTTTTAAAATGCAGTGAAATGATTGATGGTTTTGTTGATATTAG
AACTACACGTTCTGTTTTACGAGAACATCCAAAATTTTTGAAGCTTTCAA
ATGTTCTTAACTTTCTTAGCTTCTTAACATGTTCTAATTTTCGCAAATTT
TTGAGAATTATGTCCATTTTTCTAAGAAATCGGGTGTTTTGTAGTCCTCA
AAGCCTTAAAATATTCCTAACTTGTTCTTAATATTTTGGTCATAGATGCC
TTTATGTTCTTATATAGTATAGTTTGTTTTTATAAAATATGCATATTACT
TGGACAGTAAATAAAGATATCTGATAAACTCTAGAGTATCGCGGAAAACA
GCTGAAACTCCCGTAAACCTGAAACGCCCGACCCGGACCGACCCTCACAA
ATGCGTAAAACCTCTTGTGGGAAGTTAGTAGCGAGATTATGTATCTGGAA
TTCTCTACGGCTGCGGCTAAAGTAGCGAGGGAAATGGCGAGTAGAGGCTA
GTAATGGCGGGTGAAAGCAAGTTCGATATTTGACGTACGGCATTATGTCG
ACTTTGCTTATACGGTGTTTTGGTGTTTTTCCCGTACAGAGCAAAGTNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNAGCAAAGTAGACAACGACATGTCGCCTTTGGTGA
CGACCCGTACGGGCAGCCCCGCAACCGTAGCCGTAGAATATCTCCGATAC
ATAATCTCGCTAGTGTACTTTGGGTGGGACAATGTAGAATGTGGAATGGT
AGAGTGTGGTTAATTACGTGCGTCCCGTAACGTCGTGTCCCGTTCCTTTG
TGGCTTCGTGCTCTCGTGGGTCCGGAAAATATTTCGTGGGTCTTGCAGAA
AAGTCGTGGATGCAAAAAAAAATTCTCGTGCGTAGTTCGTGGCGGTTCGT
GGGTCCCAAATAAATAAAAGATAAATACAAACTAATATATGTTTATAAGC
TAATTTTTTTCGAAGCATTTTTTTGTGCTACATCATTAACCGAAAGAGTG
ACATTTTATATGAAAGCTACTTTTTGTAAGAATACAAAAAAATATTCCTA
ACTTTCTTTACTTGCAAGAAAGGCGCTTAAAAATATTGTCACGACGTGTG
TGTGTGTTTTCTTTTCTATCAACTTTTACTTCGTTTTTTGCTGATCTTAC
CACATGGAAGGAAAATTAAGTTACAGGTCAGGGGAAGTTTTAAATCACGC
TTAAATCACATGCCTTCGAATTTCTCTGGTACCCAGTGAACGCTCACTTG
AGAATCTTTAGCAATACTTAATAGTTAGTTGCTTTATTATACGGAATTTG
ATATCTGAATTGGTTAGCCTTGGAAAATATTTACTTTACATAAAGTTTCA
TCATATGTATTGCTACATTTTTTTGTTATTTTTTATCAGCTATAAGAGGT
GTACGCGTGATTTTTATGCTACAAAAAATAGTGAGGAATGGCTGGTTACA
GAATGCTTTCAATAATTTGAATTTCTTTTCACGTCTAAAATATAAATTTA
TCAGTGATTTTCCGCAATCATCTCATTGCAGAATATTCATAATTATAAGA
ACAAGTTAATAGCCGAGGCTTAAAAATGACTTTAAAAAGGAAACCTTGGG
AAATTTTTTTATGAATAAAGCTTCAAGATCAAGAATGTTTTGTGGGCTCT
AAAACTTGCACTCTTAGAAAATAAGTGTGACATAATCACAAAATACTAAA
AATGAGAACAGTTTTAGGCTTTATTAAACCTGAAAAGTAGAGAATAAAAG
ACGGCTTTACAAAATTCTGATATTCTTATATTGTCAATATTTTGTGTAAT
ATTACAGGGATGCGGCAATCACTGGGCGAAATAAGAGATTTCCAATCCTG
AAAATATCTTGAAACTATGATATTTCTATATACTTTTGTAAATATGGAAA
TTTGAGTTGTGGAAATATCATAACATATTTCATGATATTTCTAATTCTGA
AATTCATTGAAACATCATATTTTCAAAATATTTCCAATTTTTGGAAATAT
CATATTTCCAAAAGTTGGAAATATTTTGAAAATATGATATTTTATATTTG
GAAATATCATGAATTATGGTATTTCCACAACTTTGGAAATATAGGAAAGT
CATATTTCCATATTTACAAAAGATATTTTACATATTTTCAAAATATTTTC
AGAATTGGAAATTTCTTATTTCGCCCAGTGAATGATGCAAAATTTCATGA
AAAAATATTGTTCACTTTTACTAGCGAAACTTTTGTAAATATTAAGTTCT
GGAAAAATACGACGAAACAGTAAAATGAAAAGGTCTTAGAGAAATGATAA
ATGTCACATGAGTGGACAGCTTTTTTGTCGTTTAATGTCATTTAATTTTC
GGCTGTTTTTTCATGTCCTTAAAAATTAAAAAGCTAAGCAGGACAAAATT
GTTGTAAGAATTCGACCATAGAAAATTTAGCAAGTAAAATAATTCTATTA
GGGGAGTTGAGGGAGGGGATTGGGATTTGTTTTGTTTGTTATTTTTTATC
AGCTATTATAAGAGGTGTACGTCTGATTTTTATGCTACAAAAAATAGTGA
GGAGTGGCTGGATTACAGAAAGCTTTAAATAATTTGAATTTCTTTTCACG
TCTAGAATATAAATTTATCCGTCTTGAAGATCTTTACGAGAAGACCGCAA
AATGGCTACAGAAGCAAAAGACAAATTTTTCTCTGGCTTCGAAGAGGCAC
GGCAAGCGGGCAAAATAATCGATTATTACAACAATACGGCAAGTGTGTAC
AACGAAGCACTTGAACAAGCAGGATATACAGACACTACAGTCTATTGTTC
TACTCTCCTAAAGGAATATCTTTCTGGTGAAAGAGGTGAGAATAAGATTG
CTGAGCTGGAAATTCTCGATTTGGGTTGCGGTTCAGGATTAACAGGCGTT
GCCTTACAGAAAGTTGGGTTCAAACTGATCGACGGTGTAGATCCAGCTGA
CAAAATGTTACAGGTGGCAAGAGAGAAATCGGTGTATAGAAATCTCTCCA
ACGGTATCATCACAGATACAGAAAAATTGAGTTGCTTCCAAGACGAGTTG
TATGATGGCTTGTTATGTGGTGGATGTTTCACTGTGGGTCATATTAAGTT
CAATAACGGTATGCCAGAAGTTCTGAGAGTTCTCAGAAAAGGTGGAGTAG
CCGTCTATACCATTTCCTCTAAAATGGATAGCGCAGTAATTTTGAATGAA
CATATGCCGTTTTTTCTTCGCAAGCAATGCGAGATGCTCCGCGTAGAGAA
GAGATTTTATTATTCAGGCAGCAACGATAAGAGTTATTGTGACGTGTATG
TCATCAAGAAGCTGTAAACTGTAAAATATAATACTTGGACAATTGTTTTT
ATATTCTCTTTCTCTTTCATTTCGGGTGAAATTCTATTTCTCTCATACAT
GCCCTATTAGTGGATTAGAAATTGCGTGAAAAATACAAAAGATTCAACGA
TTTTTCTCCTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016805XLOC_016805Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029449-exon-sc0000748-1575043694:82253..82530TCONS_00029449-exon-sc0000748-1575043694:82253..82530Clytia hemisphaericaexon
TCONS_00029449-exon-sc0000748-1575043694:77468..78095TCONS_00029449-exon-sc0000748-1575043694:77468..78095Clytia hemisphaericaexon
TCONS_00029449-exon-sc0000748-1510915933:82253..82530TCONS_00029449-exon-sc0000748-1510915933:82253..82530Clytia hemisphaericaexon
TCONS_00029449-exon-sc0000748-1510915933:77468..78095TCONS_00029449-exon-sc0000748-1510915933:77468..78095Clytia hemisphaericaexon
TCONS_00029449-exon-sc0000748-1491911889:82253..82530TCONS_00029449-exon-sc0000748-1491911889:82253..82530Clytia hemisphaericaexon
TCONS_00029449-exon-sc0000748-1491911889:77468..78095TCONS_00029449-exon-sc0000748-1491911889:77468..78095Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000748supercontigsc0000748:77468..82530 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.545442	1.12797	20.9428	22.4221	13.2439	14.6504	5.74936	8.50841	11.777	9.99605	23.6547	26.2249	21.0901	11.6755	13.8368	10.6733	21.4276	21.285	10.4412	9.91151	5.85681	5.45128	5.859	4.0156	26.8054	14.3788
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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