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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029443 ID=TCONS_00029443|Name=TCONS_00029443|organism=Clytia hemisphaerica|type=transcript|length=1801bp
CAATCAGATGACATAGGAAAAAGCTAAACACcagtaaaaacaaaagaaat
atagaATTAACGACCAAAGATAAATCAACACCATCTTTGGAGTGTTAAGT
GGTATGGCTAGTAACATTATCCAGTACTTTGATTATGGAACTAACATGAA
TCCAGAAAAAATGAGCTTATGTCAGATACCGTTTTCAGAACGAAGACCTG
CAAAGCTTGAAAATTACGAATTTGTTATGAACCATCGGCGAATGAATGGT
ACAGCCGGAGTTAATATACGATACAATAAAGATTCAACTGTTTATGGTAT
ATTATACACTTGTACGTATGAGAGTATAGAGAGGCTGGATCGATACATGG
GATCTACATATTCAAGACAATTAATCAATGTTATTCCTAGAAAATGTTCG
GACCCAAATACACCTATACTGGTACAAGACTATGTCGATGAGCCCGTTTC
AGCTCACATTTATATTGGACTTGAAAATAGTGCGTCTAATGATATTAGTA
ATACTGTAATTGATATTAGTAAGGAATATTTAGAACACGTTTTATGTGGA
CGGGATATGTTACCGAAAGAATATGTAGATTTTTTAACGACTTTTCAACA
ACATACTGTTACGGTATGTCCTGGTGAGGAATACTTTTTGATAGATGCAG
CTAACGAAACGGAAGAGTGATTATTCAAGACATTACGTCACTATTACAAC
TGTTGATTGGTTTGTATTAACGTATTTGGTTAGAAATAAGGAGATAATTT
ACGTAAGGAAGAGTTGGAGATTCAGGATATGCATTGCTGCAATATCTTCT
AACACTACGTCACTTttacaacagctgattggttacgTATTGACGTATTG
ACGTATTAGATAGAAATAACCAGTAGAGTTGCACTATTTTGCGAAGTCGC
CACAGTGTATATCATTGATTGATATTGGTTTGAGTACTGGAAACTGATTA
TCTACCTGGTTAAGAAACGCAAGCAAAGAGATtgaattttagcaaaaata
ttgaatgttattttattttctgttcATGCGATTAGTATCGAGGGGCCAGT
GCAATCAAAATCGAGTGACGTCGCATTGCTGACCACTGTCTGACGTGGAT
TTTGATAACAATGGgcaacaaaattcaaaacaaagcgACTTCCAGAGACC
AGCTTGCCTATTCAATTAATATTGAGTGTAAGAAGGAATgagaaatggaa
attttttctttcaaatgattGAAATAAATTATATACACTTGAATTATATT
TAGAAAGTTATCGCGTCATCTTCCTCGATAACATTTTTATACGTTAAACG
TTAATTGTGGTATTAATGCATTACTTACTTGTGTTACTTGTGTGGTGTGG
GTGTTCGAGCAAAGTGCTCAGGTAGGATTCTTGGTGCTCTCCTGCACCCA
GTATATCCATGAATTTGGGGTTCATCCGGAATCGACTTTAAGTGAGTGTC
AAgggcatttttaaatttttcagttgAAGTGTTTTTTAAGTTTCTTATAC
TCTTTGGCATTGCATTGAATAGTTTTGCACCTTGTACAGAAAGAGTGCAA
TCTCTAAGCTTGGATGTTCGATTCTTGGAGATAGACAGTTGGCACAGCCG
GCCGAGCCGGGGATTTTCGTAAGCTTTTATACTGCTATTCACGTTAGGTA
CTATCCCTTCTAACACCTTCCAAACATAGGTAATGCGATAGAGTTCCCTT
CTCCTTTGAAGGGAATAGATTTTGGATTGCTTGAGACACTCCCAATAATT
GTTTGAGGTGCCTTTTATCCTTCTTAGAAAGGATTTTTGAATGTCTTCAA
G Run BLAST on NCBI protein sequence of TCONS_00029443-protein >TCONS_00029443-protein ID=TCONS_00029443-protein|Name=TCONS_00029443-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
MASNIIQYFDYGTNMNPEKMSLCQIPFSERRPAKLENYEFVMNHRRMNGT
AGVNIRYNKDSTVYGILYTCTYESIERLDRYMGSTYSRQLINVIPRKCSD
PNTPILVQDYVDEPVSAHIYIGLENSASNDISNTVIDISKEYLEHVLCGR
DMLPKEYVDFLTTFQQHTVTVCPGEEYFLIDAANETEE Run BLAST on NCBI transcript from alignment at sc0000748:29214..35240- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029443 ID=TCONS_00029443|Name=TCONS_00029443|organism=Clytia hemisphaerica|type=transcript|length=6027bp|location=Sequence derived from alignment at sc0000748:29214..35240- (Clytia hemisphaerica)
CAATCAGATGACATAGGAAAAAGGTAAACAACTGATGAATCATCTTTGTA
AAATTGTTTTTCCTAAAATTGAACTTCAGTGATTTTCAAATGGGCCATCC
CAGAAAATTTTTGTTACCCCATTGTCGGACGACATGCATTTTTTAGTNAG
TGATTTTCAAATGGGCCATCCCAGAAAATTTTTGTTACTCCCCATCGGAC
GACATTCATTTTTTAGTTTTTTCTAGCCTCGGAAATAATTTTTCTTTTCC
GGTAGTGGTCGGAAATTCCGATGAAAATCCATGTACTTTTGCAAAATGCA
TCGGAAATTCCACTCTTTTTTGCCTTTTTTAATTCAATTACTACCTTGGA
AATTCATACATTTTCTTCTCTCACCTTTTGGAAATTTCGAATTTTGGTGA
AAACTTTTGCCCTTGGAAATCCTGTGTAGTCCGCCCCCCTGTTACAGACA
AATTCTGGAATGGCCCAATGTTGAAGACCTTTTTTTTCAGCAAAATTGTG
TGAAACATTATCATTCTAATAGTCTAATGTGTGAGAATGCACGATTTTAT
TTTAACACTCAATGCATGATAAGTGGCACCTCTGTATTAACCTATCTGGA
CCCCTTCCTTCCTTTGTGTCCTTATCAGCTCAACCGATAAGAGCCTCCCC
TGCCTGCTGCGCCTGCAACAGGACCCTTTGATGCTCCGGAAACTTCCGGA
GATTTCCGGAGCAGCTAAAAAAACACTATTTTGCTTCCAGAGTAAGTGAT
TCTTTACACAGTTCCGGAGTTCCGGTGCAGACCAATCGCCGAAAATCGTG
GAAGTGCTCCGAAATTTTCTGGTGTTTCGGGGGAGCACAAAAAAACAGCT
TTTTTTGCTCCAGAAGTTTCCAGAGCGCCAGGAGGGTCCTCCTGCAACTC
GTAACCACAGAAAATAAAACGTTCATCTTCTTTATTCATCATCATCAGAT
CATGGTCTTTAGATTAGATTATCACTCACTTTTATACTAAGCTCTGTTTA
TGTGACGAAAGCATCCAGCAAGGACTTTTTTCAAACATCTGTTTCCCCCC
GTGCATGGTTACTGGAGAATAGACCTTTTTTCAAAGAGGCCACCCAGGAC
GTCCTCTTTGAAAAAAGGTCTATTCGGTCTGCTAGAGCCAGAAGTTTCAA
AAAAAATTTATTTCTAGAATAAGATATGTTTCTCCTCACAAACCTTAACC
TAAAAAAAAACTTTAATCTTAAAACTGTCCTCCTTCCTTGTCTTTTCTGA
TATGTTTCTACAATTTCCTGATTTTGATCAGTTTTTCCAAGGTATTGGAT
CTCCCTTCTTAGAATCCTAGAAATCTTTCTCTGTTTTACCGCGCTTGTTT
GTCAGTGTAGACCTAACTCTTCATACAAAAATTACGGTAAACACGGACTT
TGTACCCTGTGCTGCACACCAGCACTAAAGCTGAAGTCCCAGAAAAGCGG
GATAGCCACATAGAAGATCTTTCAAATTCAGTATGTGTATAGAGCAGTAA
AAAATACAACTTTTCTATATTTCCTTTTTTTGCAAAAGTTCTAGAAATGA
AAATAAAAGGGTAATGATAATTGAATACTATCCACTGATGATCCGAGGCG
CCATCGTAAAGCTAGAATCGCTTCTTGTACTCTTCGCTTGAGAAAATGAT
CGACAGATTAAATTTAGTTTTGTTTTGTTTTGACTGTGATGGTGTAGTTG
CTGGAATGTTTACAAGACTCTTGACAGAAAATCTTTTGTTTTATTGTCAA
TGATGACAGTACCGTTATTAATTTTGTTAGATCTGATATATTGATGTTTG
TAAGTGCACTTTATACTTTTGATTCCCATTGAAGAATCATATTCTGGTTT
TCATGTTATTAGATGCTGTTTTAGAGCTTTAGAGCTACACTGTTTGTGAT
TGATATCTGTTTTCCCTTAGAAAATACACTTTGTTTCCAGTGCAATGTCA
CATTTTTGAGAATGCTAAGTCTTATAATGTCCGATCAGGGTTGATTTAGC
TTGAAAATTATGATTTTTGGGTTAGACAACACATGAAGCTATTTGGGTCG
GACAATGTCCGATGTCCGACCGTTATTTTGAGCCATGTTCTTCGCTAGAA
AAGTGGCAAAGGAATCTTAGTGCGGATATAGGAATCTTATACGAAACGAC
AGTAGCATGACTTGTCTTCATTCTAGCTTAATGTACAATGCAGATAAGAA
AAGTCTGCTGTTTGAAGGTGATGAGAGTTACCCCTCATTTATGAAAAAAA
CCCTAATTGACGGTGTATCAGGATTAGAAACAAGGCTAATCTTACCTCTT
TTTACTCTTTCCCCAACAACAATACAATGCTAACAAGTTGACACAATGCA
TTGACATAAAGACAAGTAACCCCAAGAAATTTATATCAAATTTTGATAAA
GAGGTTTCTTCTACTGATTACTTCTTGGCGCCCCTTCACAGACTATTTAT
CAAATTTCCACCAATGAAGCTGCATTTCACAACACCCTTTTTCTTGCTTT
CAGTTTTGGCAGATGATTTTGAAAATCATACTCGTTTTGGTTGAAAATTA
ATGTTGGGCTCCCTGCCATATGCATAAATTTGGCAAGAATATTCCTAAAA
CAGGCAATTTAAAGTCTATTCAGATATAATTGGCAGTGGAAACAAGAGCG
CCTGTAACTTTTGATACCGTAAATCCTCGAATAAGCGCCAATTTTTCAGG
CTCTAAGGCCAGGGGGCGCTTATTCAAGCAGGGCGCTTATTTGAGCGGGG
CGCTTATTTGAACAGGGCGCTTATTTTTTTATTTCAGAAATTCGTATATC
AACAAATTCGGAATCTGCTTAAACTTAACTGTTTCAAAGGGTTGATTTTT
CAGAAAAGGATGAATAAAAGAAAAATTGGAAAAATCCAATTGACTCTTTC
TTTTTAAGACACAAGTATCTACTTAACATCTTATTCAATCAATAACAATA
GTCAAATAAGCGCCCCTCCCTGGAGAGGGCGCTAATGCAAAGGGGGCGCT
TATTCGAGCGGGGCGCTTATAATATTATTTTAACTAAAAGGNCATCTTAT
TCAATCAATAACAATAGTCAAATAAGCGCCCCTCCCTGGAGAGGGCGCTA
ATTCAAAGGGGGCGCTTATTCGAGCGGGGCGCTTATAATATTATTTTAAC
TAAAAGGGGGGCGCTTATTCGAGCGGGGCACTTATTCAAGCAGGGTGCTT
ATTCAAGGATTTACGTTAGTCAAATATAATTGTGGAAACCTTTTTTGCAT
GTTTTAGAGAATCAAAAGCGCTATATTTGAATGTATTTTTGGTTAAAAAA
TTCGTGATTTTAGCGGTTAAATTGAGCTTTTTTTCTATTTATGTTACAAT
GTTCACACCAGTGGTATTTCAACCTTAGGTAAAGTAGGTTGTCAAATTTC
AAGGCAAACGGAAAAGTCCTTAGGAAGATATGAGACCCGAAATACATTAT
TGTAGCACTTTTCTGTGAAATATCGTAACATCTCCAACTTTTACTAAATG
GGGGTTATGTTATCTTTTTTGAACAGTGCAATTAATAAAAGTTGGAAAGT
GTTAAGTGTTGATGCATTGGTATTATTGGTATCATTGATCGTTTCGAAAC
AAAGTGAAATCACAATTTGATTGTTTTTATTGAGACGATAAGCATATTGA
ACTTATATTGTCTGTGTTATTTTGAAATCATCAAAGAACTTTCTAATTCC
CAAAACACTAAGCACAGTCTGGTCATTAAAAAGAGATGGTAAAATGTGTT
ACNAATCATCAAAGAACTTTGCTAATTCCCAAAACACTAAGCACAGTCTG
GTCATTAAAGAGATAGTAAAATGTGTTATGATCGAAAAACTGTTTTATCA
TCACTACCCCCTTTTTTATTAAAAATTTGGAGATTTGAAGTTTTATAGAA
AAGTGCTACCAAGAGGTATTTCGGGTCCCATATCTTCCGAAGGACTTTTC
TGTTTGCCCTAAAATTTGACAACCTTCTTAGCCTAAGGTTGAACTACCAC
TGGGTTAAAATGAACGTTGCAGCATAAATAGAAAAATAGCTCAGTTTTTG
CAATCGCATATTTAAGTTAACCGCCAAAAATACATTCAAATATTGCGCTT
TTGATTCTCTAAAATAAGTAAACAAAATTTGCACTATTATATTTGACTAT
CAAAAGTTACAGGCATTCTTGTTTCCACTGCCAATTATGTCTGGATACAC
TTTTAATGTTGTGTTTCTATTGTCTTTTAATTCAATATTTACTTTTAAGC
TAAACACCAGTAAAAACAAAAGAAATATAGAATTAACGACCAAAGATAAA
TCAACACCATCTTTGGAGTGTTAAGTGGTATGGCTAGTAACATTATCCAG
TACTTTGATTATGGAACTAACATGAATCCAGAAAAAATGAGCTTATGTCA
GATACCGTTTTCAGAACGAAGACCTGCAAAGCTTGAAAATTACGAATTTG
TTATGAACCATCGGCGAATGAATGGTACAGCCGGAGTTAATATACGATAC
AATAAAGATTCAACTGTTTATGGTATATTATACACTTGTACGTATGAGAG
TATAGAGAGGCTGGATCGATACATGGGATCTACATATTCAAGACAATTAA
TCAATGTTATTCCTAGAAAATGTTCGGACCCAAATACACCTATACTGGTA
CAAGACTATGTCGATGAGCCCGTTTCAGCTCACATTTATATTGGACTTGA
AAATAGTGCGTCTAATGATATTAGTAATACTGTAATTGATATTAGTAAGG
AATATTTAGAACACGTTTTATGTGGACGGGATATGTTACCGAAAGAATAT
GTAGATTTTTTAACGACTTTTCAACAACATACTGTTACGGTATGTCCTGG
TGAGGAATACTTTTTGATAGATGCAGCTAACGAAACGGAAGAGTGATTAT
TCAAGACATTACGTCACTATTACAACTGTTGATTGGTTTGTATTAACGTA
TTTGGTTAGAAATAAGGAGATAATTTACGTAAGGAAGAGTTGGAGATTCA
GGATATGCATTGCTGCAATATCTTCTAACACTACGTCACTTTTACAACAG
CTGATTGGTTACGTATTGACGTATTGACGTATTAGATAGAAATAACCAGT
AGAGTTGCACTATTTTGCGAAGTCGCCACAGTGTATATCATTGATTGATA
TTGGTTTGAGTACTGGAAACTGATTATCTACCTGGTTAAGAAACGCAAGC
AAAGAGATTGAATTTTAGCAAAAATATTGAATGTTATTTTATTTTCTGTT
CATGCGATTAGTATCGAGGGGCCAGTGCAATCAAAATCGAGTGACGTCGC
ATTGCTGACCACTGTCTGACGTGGATTTTGATAACAATGGGCAACAAAAT
TCAAAACAAAGCGACTTCCAGAGACCAGCTTGCCTATTCAATTAATATTG
AGTGTAAGAAGGAATGAGAAATGGAAATTTTTTCTTTCAAATGATTGAAA
TAAATTATATACACTTGAATTATATTTAGAAAGTTATCGCGTCATCTTCC
TCGATAACATTTTTATACGTTAAACGTTAATTGTGGTATTAATGCATTAC
TTACTTGTGTTACTTGTGTGGTGTGGGTGTTCGAGCAAAGTGCTCAGGTA
GGATTCTTGGTGCTCTCCTGCACCCAGTATATCCATGAATTTGGGGTTCA
TCCGGAATCGACTTTAAGTGAGTGTCAAGGGCATTTTTAAATTTTTCAGT
TGAAGTGTTTTTTAAGTTTCTTATACTCTTTGGCATTGCATTGAATAGTT
TTGCACCTTGTACAGAAAGAGTGCAATCTCTAAGCTTGGATGTTCGATTC
TTGGAGATAGACAGTTGGCACAGCCGGCCGAGCCGGGGATTTTCGTAAGC
TTTTATACTGCTATTCACGTTAGGTACTATCCCTTCTAACACCTTCCAAA
CATAGGTAATGCGATAGAGTTCCCTTCTCCTTTGAAGGGAATAGATTTTG
GATTGCTTGAGACACTCCCAATAATTGTTTGAGGTGCCTTTTATCCTTCT
TAGAAAGGATTTTTGAATGTCTTCAAG Coding sequence (CDS) from alignment at sc0000748:29214..35240- >TCONS_00029443 ID=TCONS_00029443|Name=TCONS_00029443|organism=Clytia hemisphaerica|type=CDS|length=567bp|location=Sequence derived from alignment at sc0000748:29214..35240- (Clytia hemisphaerica)
ATGGCTAGTAACATTATCCAGTACTTTGATTATGGAACTAACATGAATCC
AGAAAAAATGAGCTTATGTCAGATACCGTTTTCAGAACGAAGACCTGCAA
AGCTTGAAAATTACGAATTTGTTATGAACCATCGGCGAATGAATGGTACA
GCCGGAGTTAATATACGATACAATAAAGATTCAACTGTTTATGGTATATT
ATACACTTGTACGTATGAGAGTATAGAGAGGCTGGATCGATACATGGGAT
CTACATATTCAAGACAATTAATCAATGTTATTCCTAGAAAATGTTCGGAC
CCAAATACACCTATACTGGTACAAGACTATGTCGATGAGCCCGTTTCAGC
TCACATTTATATTGGACTTGAAAATAGTGCGTCTAATGATATTAGTAATA
CTGTAATTGATATTAGTAAGGAATATTTAGAACACGTTTTATGTGGACGG
GATATGTTACCGAAAGAATATGTAGATTTTTTAACGACTTTTCAACAACA
TACTGTTACGGTATGTCCTGGTGAGGAATACTTTTTGATAGATGCAGCTA
ACGAAACGGAAGAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029443-exon-sc0000748-1575043694:35218..35240 | TCONS_00029443-exon-sc0000748-1575043694:35218..35240 | Clytia hemisphaerica | exon |
| TCONS_00029443-exon-sc0000748-1575043694:29214..30991 | TCONS_00029443-exon-sc0000748-1575043694:29214..30991 | Clytia hemisphaerica | exon |
| TCONS_00029443-exon-sc0000748-1510915933:35218..35240 | TCONS_00029443-exon-sc0000748-1510915933:35218..35240 | Clytia hemisphaerica | exon |
| TCONS_00029443-exon-sc0000748-1510915933:29214..30991 | TCONS_00029443-exon-sc0000748-1510915933:29214..30991 | Clytia hemisphaerica | exon |
| TCONS_00029443-exon-sc0000748-1491911889:35218..35240 | TCONS_00029443-exon-sc0000748-1491911889:35218..35240 | Clytia hemisphaerica | exon |
| TCONS_00029443-exon-sc0000748-1491911889:29214..30991 | TCONS_00029443-exon-sc0000748-1491911889:29214..30991 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000748 | supercontig | sc0000748:29214..35240 - |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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