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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029410 ID=TCONS_00029410|Name=TCONS_00029410|organism=Clytia hemisphaerica|type=transcript|length=906bp
tacaaaattttgtaaattttaaaattttaaaaagattttaaaatcctACT
CTATATTTTCTAAGAATATGAGGAAACAATCAACCTGGAAGATCCTTTCT
CAAGGAATGATCTCCTTTTTTTTGACATGGAACTGTTTATTTGTCTCTGC
TGATCTACCCATGCTTTAACGAAAGCATTTCCACGAATGTTAATCCAata
aatcattatttttcttaGCAGAAAGGTTTTTAAACTTTCGATAcattctg
atttttttgtgattgtaTTCCAATGATGAATTATTCTCTTGTCCTGTAGC
ATATTTTGAAGTAAGACTTCCCGCAGATTTTCACCTCGATATCTTTTCAG
TAGATTAACATTGAATACTTTTCGAACAGCATATTCCATGCTACGAAAAA
ACAGATAAGCGTTGTCGGACACAACAAAGAGCCCTCCTCTGTTTCTATAA
TCGAACCATTGCGTTgtgaattctaaaaatttttgtgTATCATATTTCTT
TCGGAAAAGTGATATCAGCTCTAAAATATGATTGAACTTTTGATTATTGT
GACAGTATTTCTTAAAGTGCTTTTCAAGAACATAAGGAATGTATCCGGCA
ACATAGCGTACCACGTTTTGCTCTCTTTCAGGTAGCTTTTcaatatcaac
attttcttcagtgACAGGTGTGATGTTCTTTTGAATAAGAATCTCGATCA
TATAAAATGTGAGTTTTTGACGAACTAAATCTCTACTGAGGAAGGATACT
TTGTCCAAAATTGCTTTCCAAGATAAAATGAGTGGACTTTTATCATCTGC
TAGTGATTTGTACAAACTCTtcataattctcttttttccTTCAGAAAATA
GCGTGCATGTTTCACATTGAGAAAGTACTTTGTAGAGCTCTTCTACAAGA
TTTGAA Run BLAST on NCBI protein sequence of TCONS_00029410-protein >TCONS_00029410-protein ID=TCONS_00029410-protein|Name=TCONS_00029410-protein|organism=Clytia hemisphaerica|type=polypeptide|length=281bp
SNLVEELYKVLSQCETCTLFSEGKKRIMKSLYKSLADDKSPLILSWKAIL
DKVSFLSRDLVRQKLTFYMIEILIQKNITPVTEENVDIEKLPEREQNVVR
YVAGYIPYVLEKHFKKYCHNNQKFNHILELISLFRKKYDTQKFLEFTTQW
FDYRNRGGLFVVSDNAYLFFRSMEYAVRKVFNVNLLKRYRGENLREVLLQ
NMLQDKRIIHHWNTITKKSECIESLKTFLLRKIMIYWINIRGNAFVKAWV
DQQRQINSSMSKKRRSFLEKGSSRLIVSSYS Run BLAST on NCBI transcript from alignment at sc0000747:14876..15781 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029410 ID=TCONS_00029410|Name=TCONS_00029410|organism=Clytia hemisphaerica|type=transcript|length=906bp|location=Sequence derived from alignment at sc0000747:14876..15781 (Clytia hemisphaerica)
TTCAAATCTTGTAGAAGAGCTCTACAAAGTACTTTCTCAATGTGAAACAT
GCACGCTATTTTCTGAAggaaaaaagagaattatgaAGAGTTTGTACAAA
TCACTAGCAGATGATAAAAGTCCACTCATTTTATCTTGGAAAGCAATTTT
GGACAAAGTATCCTTCCTCAGTAGAGATTTAGTTCGTCAAAAACTCACAT
TTTATATGATCGAGATTCTTATTCAAAAGAACATCACACCTGTcactgaa
gaaaatgttgatattgAAAAGCTACCTGAAAGAGAGCAAAACGTGGTACG
CTATGTTGCCGGATACATTCCTTATGTTCTTGAAAAGCACTTTAAGAAAT
ACTGTCACAATAATCAAAAGTTCAATCATATTTTAGAGCTGATATCACTT
TTCCGAAAGAAATATGATAcacaaaaatttttagaattcacAACGCAATG
GTTCGATTATAGAAACAGAGGAGGGCTCTTTGTTGTGTCCGACAACGCTT
ATCTGTTTTTTCGTAGCATGGAATATGCTGTTCGAAAAGTATTCAATGTT
AATCTACTGAAAAGATATCGAGGTGAAAATCTGCGGGAAGTCTTACTTCA
AAATATGCTACAGGACAAGAGAATAATTCATCATTGGAAtacaatcacaa
aaaaatcagaatgTATCGAAAGTTTAAAAACCTTTCTGCtaagaaaaata
atgatttatTGGATTAACATTCGTGGAAATGCTTTCGTTAAAGCATGGGT
AGATCAGCAGAGACAAATAAACAGTTCCATGTCAAAAAAAAGGAGATCAT
TCCTTGAGAAAGGATCTTCCAGGTTGATTGTTTCCTCATATTCTTAGAAA
ATATAGAGTaggattttaaaatctttttaaaattttaaaatttacaaaat
tttgta Coding sequence (CDS) from alignment at sc0000747:14876..15781 >TCONS_00029410 ID=TCONS_00029410|Name=TCONS_00029410|organism=Clytia hemisphaerica|type=CDS|length=846bp|location=Sequence derived from alignment at sc0000747:14876..15781 (Clytia hemisphaerica)
TCAAATCTTGTAGAAGAGCTCTACAAAGTACTTTCTCAATGTGAAACATG
CACGCTATTTTCTGAAggaaaaaagagaattatgaAGAGTTTGTACAAAT
CACTAGCAGATGATAAAAGTCCACTCATTTTATCTTGGAAAGCAATTTTG
GACAAAGTATCCTTCCTCAGTAGAGATTTAGTTCGTCAAAAACTCACATT
TTATATGATCGAGATTCTTATTCAAAAGAACATCACACCTGTcactgaag
aaaatgttgatattgAAAAGCTACCTGAAAGAGAGCAAAACGTGGTACGC
TATGTTGCCGGATACATTCCTTATGTTCTTGAAAAGCACTTTAAGAAATA
CTGTCACAATAATCAAAAGTTCAATCATATTTTAGAGCTGATATCACTTT
TCCGAAAGAAATATGATAcacaaaaatttttagaattcacAACGCAATGG
TTCGATTATAGAAACAGAGGAGGGCTCTTTGTTGTGTCCGACAACGCTTA
TCTGTTTTTTCGTAGCATGGAATATGCTGTTCGAAAAGTATTCAATGTTA
ATCTACTGAAAAGATATCGAGGTGAAAATCTGCGGGAAGTCTTACTTCAA
AATATGCTACAGGACAAGAGAATAATTCATCATTGGAAtacaatcacaaa
aaaatcagaatgTATCGAAAGTTTAAAAACCTTTCTGCtaagaaaaataa
tgatttatTGGATTAACATTCGTGGAAATGCTTTCGTTAAAGCATGGGTA
GATCAGCAGAGACAAATAAACAGTTCCATGTCAAAAAAAAGGAGATCATT
CCTTGAGAAAGGATCTTCCAGGTTGATTGTTTCCTCATATTCTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029410-exon-sc0000747-1491911889:14876..15781 | TCONS_00029410-exon-sc0000747-1491911889:14876..15781 | Clytia hemisphaerica | exon |
| TCONS_00029410-exon-sc0000747-1510915933:14876..15781 | TCONS_00029410-exon-sc0000747-1510915933:14876..15781 | Clytia hemisphaerica | exon |
| TCONS_00029410-exon-sc0000747-1575043694:14876..15781 | TCONS_00029410-exon-sc0000747-1575043694:14876..15781 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000747 | supercontig | sc0000747:14876..15781 . |
Blast
The following BLAST results are available for this feature:
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