TCONS_00029406 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029406
Unique NameTCONS_00029406
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029406 ID=TCONS_00029406|Name=TCONS_00029406|organism=Clytia hemisphaerica|type=transcript|length=839bp
CTTGACTTTAATAGAAAGCCAggttttacaaactcaaaaaacagCTTAAA
TGTTAAGCACATTgatgaaaattaaaattcttcTTGGTTTTATAAAAAGT
AGTTGTAATGTAGCAGCTTTAGGATTTGGGCAATTCATAAAAGACTTCCC
CATTCTTGGGGAGGATGGGCTAATCTATAATTTTTTCCATTATCTTTCTT
CCGTTTCTAATAATATACATGATATGCATACCACACGTACAATTTAGGaa
tagaatgaaaaataaataaagatgtCCAGCTCGGAAATTGATGATCCGAA
TGACAGTGACTTTATTCCTGATAGTGAAGATGAAGAGGAATCAGAAGAAA
ACTGTATCCCTCCTACACCGGCTAAAAGAAAACGCAAAATCAAAGAAAGT
CAAATCCAAGAAAGTTCAAAAGacaaagtgacaaaaaagaaaacgaagTA
CAATACCCTGCCAAATGATCTTAAACAAAAGGTAGCGAATGATTACGACA
ATAAGATATCTAAACTGCAAGACCTCGTTGAAAAGGATGAAAATACAGAT
TACATTGCAATCTTCACACTTGTCATGGAGTTGGGATCCTTAGAACTTGA
CTATTCTTTCCTGCTGTCGAAGAAACTAAGACCTAGAACGGACACCCTAA
TTGATATACTTTTAAAGGTAACTTTACGTCCTCACTTTCGTAATGATAGC
ATGAATAAAATAGCGGAacaattgaaaataatcaaNCGCTAAAACGGAAA
CCCTAATTGATATACTTTTAAAGGTAACTTTACGTCCTCACTTTCGTAAT
GATAGCATGAATAAAATAGCGGAacaattgaaaataatc
Run BLAST on NCBI

protein sequence of TCONS_00029406-protein

>TCONS_00029406-protein ID=TCONS_00029406-protein|Name=TCONS_00029406-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MSSSEIDDPNDSDFIPDSEDEEESEENCIPPTPAKRKRKIKESQIQESSK
DKVTKKKTKYNTLPNDLKQKVANDYDNKISKLQDLVEKDENTDYIAIFTL
VMELGSLELDYSFLLSKKLRPRTDTLIDILLKVTLRPHFRNDSMNKIAEQ
LKIIXR
Run BLAST on NCBI

transcript from alignment at sc0000747:134533..136198-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029406 ID=TCONS_00029406|Name=TCONS_00029406|organism=Clytia hemisphaerica|type=transcript|length=1666bp|location=Sequence derived from alignment at sc0000747:134533..136198- (Clytia hemisphaerica)
CTTGACTTTAATAGAAAGCCAGGTTTTACAAACTCAAAAAACAGCTTAAA
TGTTAAGCACATTGATGAAAATTAAAATTCTTCTTGGTTTTATAAAAAGT
AGTTGTAATGTAGCAGCTTTAGGATTTGGGCAATTCATAAAAGACTTCCC
CATTCTTGGGGAGGATGGGCTAATCTATAATTTTTTCCATTATCTTTCTT
CCGTTTCTAATAATATACATGATATGCATACCACACGTACAATTTAGGAA
TAGAATGAAAAATAAATAAAGATGTCCAGCTCGGAAATTGATGATCCGAA
TGACAGTGACTTTATTCCTGATAGTGAAGATGAAGAGGAATCAGAAGAAA
ACTGTATCCCTCCTACACCGGCTAAAAGTAAGGAGAAGTATGATTTTTCT
GTCATGCCCATTTTTACTTTGGTTTCGTTTTATCATCCCTTATTAAAGCA
GTACCAATCATTGAAATATTCAATTTATGAATGTTTGCGTTTTTATACTT
TATTGGATAGGAAAACGCAAAATCAAAGAAAGTCAAATCCAAGAAAGTTC
AAAAGGTTAGTAGAGTGCTTGACGAAGAAAACCAGAGCCATTTAAAATTT
TTTTAAATTATCTTGTCATAATAAAAAAGTACAAAATAATATTTTGAAGT
TTGAGTTAAAGAAATAAATATTCAAATCATTTATTGGCTTAGCTTTTTGA
TATTTTGTTCTGTGGTTTTACTTTTAGACAAAGTGACAAAAAAGAAAACG
AAGTACAATACCCTGCCAAATGGTATGTCATTGTCTCTTAAAAAAAGAAA
AATTGAAACAGTATTTTTAAGTACAGTAAATTTTCTTGAATCATGCCAGT
TTGGTAATTCATTTTTATTCTAAAAGACTAATTTGGTTACTTAATGCTTG
TTTATGAAATAAATAAAAAACATGTGATTAAAATAATGTGTAGCTGTAGA
TTCTCTTAATGCCTTTATTATGGTCAACTTAAACGTCTTCATTACAGTGC
TTGAAATCTATGTAAAGTTCTTAGTAATGTGTATATTTCTTAGGTTTATT
TTAACCTTCAATTTTAGATCTTAAACAAAAGGTAGCGAATGATTACGACA
ATAAGATATCTAAACTGCAAGACCTCGTTGAAAAGGATGAAAATACAGTA
AGGCTTCAAACTTTTTTTTGACAAACTTTATTGCTTTGTCATTCATAAAA
GATGTACATAATAGAAATTAACATTTTCAAGAAAGTCTTGTGGATGTATG
AACATCAACCTTATTTTGAAGTTTTCTAGTGCAAGCTCGTCAATATTTAA
TACTAGTTTGTGTTACAATGATTGGGAAAATAGCAAACACAACATGTGAT
TTTGAAAGTCAATTTAAATTTTAGGATTACATTGCAATCTTCACACTTGT
CATGGAGTTGGGATCCTTAGAACTTGACTATTCTTTCCTGCTGTCGAAGA
AACTAAGACCTAGAACGGACACCCTAATTGATATACTTTTAAAGGTAACT
TTACGTCCTCACTTTCGTAATGATAGCATGAATAAAATAGCGGAACAATT
GAAAATAATCAANCGCTAAAACGGAAACCCTAATTGATATACTTTTAAAG
GTAACTTTACGTCCTCACTTTCGTAATGATAGCATGAATAAAATAGCGGA
ACAATTGAAAATAATC

Coding sequence (CDS) from alignment at sc0000747:134533..136198-

>TCONS_00029406 ID=TCONS_00029406|Name=TCONS_00029406|organism=Clytia hemisphaerica|type=CDS|length=2355bp|location=Sequence derived from alignment at sc0000747:134533..136198- (Clytia hemisphaerica)
GATTACATTGCAATCTTCACACTTGTCATGGAGTTGGGATCCTTAGAACT
TGACTATTCTTTCCTGCTGTCGAAGAAACTAAGACCTAGAACGGACACCC
TAATTGATATACTTTTAAAGGTAACTTTACGTCCTCACTTTCGTAATGAT
AGCATGAATAAAATAGCGGAACAATTGAAAATAATCAANCGCTAAATCTT
AAACAAAAGGTAGCGAATGATTACGACAATAAGATATCTAAACTGCAAGA
CCTCGTTGAAAAGGATGAAAATACAACAAAGTGACAAAAAAGAAAACGAA
GTACAATACCCTGCCAAATGGAAAACGCAAAATCAAAGAAAGTCAAATCC
AAGAAAGTTCAAAAGATGTCCAGCTCGGAAATTGATGATCCGAATGACAG
TGACTTTATTCCTGATAGTGAAGATGAAGAGGAATCAGAAGAAAACTGTA
TCCCTCCTACACCGGCTAAAAGATTACATTGCAATCTTCACACTTGTCAT
GGAGTTGGGATCCTTAGAACTTGACTATTCTTTCCTGCTGTCGAAGAAAC
TAAGACCTAGAACGGACACCCTAATTGATATACTTTTAAAGGTAACTTTA
CGTCCTCACTTTCGTAATGATAGCATGAATAAAATAGCGGAACAATTGAA
AATAATCAANCGCTAAATCTTAAACAAAAGGTAGCGAATGATTACGACAA
TAAGATATCTAAACTGCAAGACCTCGTTGAAAAGGATGAAAATACAACAA
AGTGACAAAAAAGAAAACGAAGTACAATACCCTGCCAAATGGAAAACGCA
AAATCAAAGAAAGTCAAATCCAAGAAAGTTCAAAAGATGTCCAGCTCGGA
AATTGATGATCCGAATGACAGTGACTTTATTCCTGATAGTGAAGATGAAG
AGGAATCAGAAGAAAACTGTATCCCTCCTACACCGGCTAAAAGATTACAT
TGCAATCTTCACACTTGTCATGGAGTTGGGATCCTTAGAACTTGACTATT
CTTTCCTGCTGTCGAAGAAACTAAGACCTAGAACGGACACCCTAATTGAT
ATACTTTTAAAGGTAACTTTACGTCCTCACTTTCGTAATGATAGCATGAA
TAAAATAGCGGAACAATTGAAAATAATCAANCGCTAAATCTTAAACAAAA
GGTAGCGAATGATTACGACAATAAGATATCTAAACTGCAAGACCTCGTTG
AAAAGGATGAAAATACAACAAAGTGACAAAAAAGAAAACGAAGTACAATA
CCCTGCCAAATGGAAAACGCAAAATCAAAGAAAGTCAAATCCAAGAAAGT
TCAAAAGATGTCCAGCTCGGAAATTGATGATCCGAATGACAGTGACTTTA
TTCCTGATAGTGAAGATGAAGAGGAATCAGAAGAAAACTGTATCCCTCCT
ACACCGGCTAAAAGATTACATTGCAATCTTCACACTTGTCATGGAGTTGG
GATCCTTAGAACTTGACTATTCTTTCCTGCTGTCGAAGAAACTAAGACCT
AGAACGGACACCCTAATTGATATACTTTTAAAGGTAACTTTACGTCCTCA
CTTTCGTAATGATAGCATGAATAAAATAGCGGAACAATTGAAAATAATCA
ANCGCTAAATCTTAAACAAAAGGTAGCGAATGATTACGACAATAAGATAT
CTAAACTGCAAGACCTCGTTGAAAAGGATGAAAATACAACAAAGTGACAA
AAAAGAAAACGAAGTACAATACCCTGCCAAATGGAAAACGCAAAATCAAA
GAAAGTCAAATCCAAGAAAGTTCAAAAGATGTCCAGCTCGGAAATTGATG
ATCCGAATGACAGTGACTTTATTCCTGATAGTGAAGATGAAGAGGAATCA
GAAGAAAACTGTATCCCTCCTACACCGGCTAAAAGATTACATTGCAATCT
TCACACTTGTCATGGAGTTGGGATCCTTAGAACTTGACTATTCTTTCCTG
CTGTCGAAGAAACTAAGACCTAGAACGGACACCCTAATTGATATACTTTT
AAAGGTAACTTTACGTCCTCACTTTCGTAATGATAGCATGAATAAAATAG
CGGAACAATTGAAAATAATCAANCGCTAAATCTTAAACAAAAGGTAGCGA
ATGATTACGACAATAAGATATCTAAACTGCAAGACCTCGTTGAAAAGGAT
GAAAATACAACAAAGTGACAAAAAAGAAAACGAAGTACAATACCCTGCCA
AATGGAAAACGCAAAATCAAAGAAAGTCAAATCCAAGAAAGTTCAAAAGA
TGTCCAGCTCGGAAATTGATGATCCGAATGACAGTGACTTTATTCCTGAT
AGTGAAGATGAAGAGGAATCAGAAGAAAACTGTATCCCTCCTACACCGGC
TAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016780XLOC_016780Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029406-exon-sc0000747-1575043694:135822..136198TCONS_00029406-exon-sc0000747-1575043694:135822..136198Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1575043694:135644..135688TCONS_00029406-exon-sc0000747-1575043694:135644..135688Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1575043694:135427..135471TCONS_00029406-exon-sc0000747-1575043694:135427..135471Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1575043694:135052..135131TCONS_00029406-exon-sc0000747-1575043694:135052..135131Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1575043694:134533..134824TCONS_00029406-exon-sc0000747-1575043694:134533..134824Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1510915933:135822..136198TCONS_00029406-exon-sc0000747-1510915933:135822..136198Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1510915933:135644..135688TCONS_00029406-exon-sc0000747-1510915933:135644..135688Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1510915933:135427..135471TCONS_00029406-exon-sc0000747-1510915933:135427..135471Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1510915933:135052..135131TCONS_00029406-exon-sc0000747-1510915933:135052..135131Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1510915933:134533..134824TCONS_00029406-exon-sc0000747-1510915933:134533..134824Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1491911889:135822..136198TCONS_00029406-exon-sc0000747-1491911889:135822..136198Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1491911889:135644..135688TCONS_00029406-exon-sc0000747-1491911889:135644..135688Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1491911889:135427..135471TCONS_00029406-exon-sc0000747-1491911889:135427..135471Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1491911889:135052..135131TCONS_00029406-exon-sc0000747-1491911889:135052..135131Clytia hemisphaericaexon
TCONS_00029406-exon-sc0000747-1491911889:134533..134824TCONS_00029406-exon-sc0000747-1491911889:134533..134824Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029406-proteinTCONS_00029406-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000747supercontigsc0000747:134533..136198 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.168942	0.10983	0.0637615	0.0623806	1.36696	1.26022	1.08601	1.22005	0.806729	1.35194	0.912856	0.750095	0.898862	1.28353	0.639538	0.61769	0.634119	0.303311	0.897943	1.50341	0.544475	1.03574	0.516547	0.704424	1.33016	0.377724	0.386088	0.0824086	0.500032	0.318408
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029406 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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