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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029401 ID=TCONS_00029401|Name=TCONS_00029401|organism=Clytia hemisphaerica|type=transcript|length=1479bp
GTAGCTGGTAATTTCATTCGGGTCCTCAAAATGTATACAAAGATAAACAA
TCATATCCATAATGATAGACATAGTCGCGCTAAATGTTACAAGTTGTTGC
AGTTTTGTGGTCATGATCATGCTGCTGGTTGGCTGTGGTCCATGATTGAT
TGGCAAACTAAACAATCATCATTGGCTATATATTCATCATTCattctggt
tgaaaaccttttcCCGAATAATGCCTCTACCAAATTACATTCCTTGTATT
GTTGGGGGTGAAGAATCCAATAACAGAAAGTCTTTCATCGTACAATACTT
CAACCAAGGCtgttcaaattttgacattttgggTTTTTTATTGTTACATC
ATAACATACAAATCAGCTTGTCCACTCTTAAAAGAGATTTAGTTGCACTT
GGCCTATCCAGGCGACATCTTGCGACTGCTGAAAACCCTAATGAAATTCG
TCAGTTAATCGAAGAAGAATTGGCTGGAAGTGGTGTCAATTTGGGATATC
GAAAAATCTGGAAGATTATCCAAAGCAAGGGCATTCCTGCAAAACGTCAG
ACTGTTATGGAGATATTACGAGAGGTGGACCCAGAGGGTGTTCAAgcacg
aaaaaaaaaacgtctGCGAAGACGAATTTACTCTGTTCCTGGACCAGACC
ATCTCTGGCATATTGATGGATATGATAAACTAAAACCTTACGGTTTTAGT
ATTCATGGCTGCATAGATGGCTTTTCTCGAAGATTGATTTGGCTAGAGGT
TTGTCCATCAAATAAAAATCCACGCGTCATTGCCAAATTCTTTATTGATG
CAGCTAAACAACTAAGAGGCATTCCCTTGAGAATCAGATGCGATGATGGG
ACGGAGAATAGCATAATAGAACCAATACAAGTAGCGTTAAGGTCAGCTGA
TGATGACGAATTCAGTGGTGAAGGAAGTTTTTTAATTGGAACCTCCCCAG
CGAATCAAAGGATTGAATGCTTTTGGTCCCAGTTTAATAAAGAACGTCCA
ATGTGGTGgaggattttttttaaagatttgagcGATAATGGTTTACTTGA
TATTGCCGTTCCTGCAGTAGCAGAATGTGTGCGTTACTGCTTCATGGATA
TTTTGAGGGCAGAGCTGACAGATGTTGCCCTTCGTTGGAACCAACATATC
ATTTCACCCAGTCAAAATGTATCTCTTCCCAGAGGTCGTCCTGACTCCCT
GTACTTTTTACCTCAGCTTTATGAGAGTCGCTCCTACAGAAAAGAAATTA
ATATCGATGAACTTTCTGTTTTTGAGGACCCAGAAGTCATTATTCAACCA
GAGGATAACAGTCCagaatttttggaatttgtttcCAAAGCGGTAGAACT
GAAAGGAATAGAGAACTTTTCAAAACCTAAAACAACAAAAGACGCATTAG
aactatattttattttattagaaCTTATTCAGGAGTTTATGTAGTTTGGA
TGTGATGAACGATGATCTTTCTATTTTTC Run BLAST on NCBI protein sequence of TCONS_00029401-protein >TCONS_00029401-protein ID=TCONS_00029401-protein|Name=TCONS_00029401-protein|organism=Clytia hemisphaerica|type=polypeptide|length=407bp
MPLPNYIPCIVGGEESNNRKSFIVQYFNQGCSNFDILGFLLLHHNIQISL
STLKRDLVALGLSRRHLATAENPNEIRQLIEEELAGSGVNLGYRKIWKII
QSKGIPAKRQTVMEILREVDPEGVQARKKKRLRRRIYSVPGPDHLWHIDG
YDKLKPYGFSIHGCIDGFSRRLIWLEVCPSNKNPRVIAKFFIDAAKQLRG
IPLRIRCDDGTENSIIEPIQVALRSADDDEFSGEGSFLIGTSPANQRIEC
FWSQFNKERPMWWRIFFKDLSDNGLLDIAVPAVAECVRYCFMDILRAELT
DVALRWNQHIISPSQNVSLPRGRPDSLYFLPQLYESRSYRKEINIDELSV
FEDPEVIIQPEDNSPEFLEFVSKAVELKGIENFSKPKTTKDALELYFILL
ELIQEFM Run BLAST on NCBI transcript from alignment at sc0000747:35150..38214+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00029401 ID=TCONS_00029401|Name=TCONS_00029401|organism=Clytia hemisphaerica|type=transcript|length=3065bp|location=Sequence derived from alignment at sc0000747:35150..38214+ (Clytia hemisphaerica)
GTAGCTGGTAATTTCATTCGGGTCCTCAAAATGTATACAAAGATAAACAA
TCATATCCATAATGATAGACATAGTCGCGCTAAATGTTACAAGTTGTTGC
AGTTTTGTGGTCATGATCATGCTGCTGGTTGGCTGTGGTCCATGATTGAT
TGGCAAACTAAACAATCATCATTGGCTATATATTCATCATTCattctggt
tgaaaaccttttcCCGAATAATGCCTCTACCAAATTACATTCCTTGTATT
GTTGGGGGTGAAGAATCCAATAACAGAAAGTCTTTCATCGTACAATACTT
CAACCAAGGCtgttcaaattttgacattttgggTTTTTTATTGTTACATC
ATAACATACAAATCAGCTTGTCCACTCTTAAAAGAGATTTAGTTGCACTT
GGCCTATCCAGGCGACATCTTGCGACTGCTGAAAACCCTAATGAAATTCG
TCAGTTAATCGAAGAAGAATTGGCTGGAAGTGGTGTCAATTTGGGTGAGT
AAAAAAGAAGCGCGCGTCAGGACCCTTGGAATTCATTCACTGGACATCCG
GCCACATCTGGTGTTACTTTTCTGTGGGAAAATATTGAACCTGATCGACA
TCACTTTTTATTTTGAGGCCATTGCAGTCCTGTTGAAAGACGGACAGAGA
cgtcaatcaataaataaaaacGCAAACTTGTAAAAAGCTATTGACCAACA
GAGTGATCGATCAAAAACCGTGTGATGGGCTAGTATAGGCTAAAATTTCA
GCTGCTTTTAGAATATATATTTCACCATAATTAATGATGGAGGGACTAAA
CAACACGGCTAATGGCTTGGTTTAAGTTTCAAGATATTCAAAAATTAGAT
TCTTAATCTTTCCATTTTACGGTGACAGTAGGTCAGACTAAAAGTTAAGC
TAACCTATTATGGTCATAGtcttaccgtaacttggtctaatgttgacacc
cATCCTCTAATtctccgacaccctttttatcagctgaaatttatataGAA
acagaaaggttgaaactgtttttctttgcttagtggtcagagaggaataa
tcctttttcaatcagtgatccaagctttcatattattcctttctctaaag
gaGGGTGtgggaattagacgagggatgttgatattagaccaacttacggt
attgtGGCCACCCCCTTTTAAAAAGGTGTGGTTAACACCTATCATGATAA
AAATTTCTCCAGTTAATAATGCTATTGTAATCTATTAGTAGATATCAAAt
ttactttgaattttttttttactttttcaaaagttcaaagGTGATGAAAA
ATTACCCCTAAAAATCTAGAAATTAAATTTGCTGACCCAACTGCCAAGCC
TTCTCAGAAGACAAAGACAAATCATTGTTACTTCTACTTTTTACAGAGCC
TAACTATACTGTTGGACTACTAGTTGATTAtactttcaatgaaaaatatt
ttttctaaagggCGAGACCATCCATGTTCTGACAATGCTACCTCAAACCT
ATTATGGCCATGTAAGATATTTTCattaacattttgaaaaatatttcttt
tacaCAAATGAATTGACCATAAAACTGGGCTACTACCCTCAAAAGAACGT
CAAAATAAAATGCAGATAAATGATCTTATAGTCATAAAATGCCAAAATAG
CCAAAACACGCCCTAAAGCCTGCCACACCCAACACGAAGCACAATTTGGA
ATTGAAAAGTTTATTGTAGAACTTGACTCATATAAGATTGTTACAAGAGT
AACTCAAAAAGGTCTGAAAGCATggttttcttacatttttagCTGAGGTG
GCCATAATAGGACTGGGATGGCCATAATAATAATAGGTTCAGACAAaccc
tttttttaaacttttctttttcatcttcatcaacTTCAATTTTAATTATT
CTTGTTTTATCATGTAAAGCAATGACGTAGCTTTGCAAAACAcaaagatt
tatgaaaaaatatattttgttccCCTCCAAAAAGACTTAGACCAAACATG
ATCATAATACTTAGCCTAGCTTACTTACCCTTAAATCTATCATTTACAac
taaaatgaaattctttacttttttttatagGATATCGAAAAATCTGGAAG
ATTATCCAAAGCAAGGGCATTCCTGCAAAACGTCAGACTGTTATGGAGAT
ATTACGAGAGGTGGACCCAGAGGGTGTTCAAgcacgaaaaaaaaaacgtc
tGCGAAGACGAATTTACTCTGTTCCTGGACCAGACCATCTCTGGCATATT
GATGGATATGATAAACTAAAACCTTACGGTTTTAGTATTCATGGCTGCAT
AGATGGCTTTTCTCGAAGATTGATTTGGCTAGAGGTTTGTCCATCAAATA
AAAATCCACGCGTCATTGCCAAATTCTTTATTGATGCAGCTAAACAACTA
AGAGGCATTCCCTTGAGAATCAGATGCGATGATGGGACGGAGAATAGCAT
AATAGAACCAATACAAGTAGCGTTAAGGTCAGCTGATGATGACGAATTCA
GTGGTGAAGGAAGTTTTTTAATTGGAACCTCCCCAGCGAATCAAAGGATT
GAATGCTTTTGGTCCCAGTTTAATAAAGAACGTCCAATGTGGTGgaggat
tttttttaaagatttgagcGATAATGGTTTACTTGATATTGCCGTTCCTG
CAGTAGCAGAATGTGTGCGTTACTGCTTCATGGATATTTTGAGGGCAGAG
CTGACAGATGTTGCCCTTCGTTGGAACCAACATATCATTTCACCCAGTCA
AAATGTATCTCTTCCCAGAGGTCGTCCTGACTCCCTGTACTTTTTACCTC
AGCTTTATGAGAGTCGCTCCTACAGAAAAGAAATTAATATCGATGAACTT
TCTGTTTTTGAGGACCCAGAAGTCATTATTCAACCAGAGGATAACAGTCC
agaatttttggaatttgtttcCAAAGCGGTAGAACTGAAAGGAATAGAGA
ACTTTTCAAAACCTAAAACAACAAAAGACGCATTAGaactatattttatt
ttattagaaCTTATTCAGGAGTTTATGTAGTTTGGATGTGATGAACGATG
ATCTTTCTATTTTTC Coding sequence (CDS) from alignment at sc0000747:35150..38214+ >TCONS_00029401 ID=TCONS_00029401|Name=TCONS_00029401|organism=Clytia hemisphaerica|type=CDS|length=2448bp|location=Sequence derived from alignment at sc0000747:35150..38214+ (Clytia hemisphaerica)
ATGCCTCTACCAAATTACATTCCTTGTATTGTTGGGGGTGAAGAATCCAA
TAACAGAAAGTCTTTCATCGTACAATACTTCAACCAAGGCtgttcaaatt
ttgacattttgggTTTTTTATTGTTACATCATAACATACAAATCAGCTTG
TCCACTCTTAAAAGAGATTTAGTTGCACTTGGCCTATCCAGGCGACATCT
TGCGACTGCTGAAAACCCTAATGAAATTCGTCAGTTAATCGAAGAAGAAT
TGGCTGGAAGTGGTGTCAATTTGGGATATCGAAAAATCTGGAAGATTATC
CAAAGCAAGGGCATTCCTGCAAAACGTCAGACTGTTATGGAGATATTACG
AGAGGTGGACCCAGAGGGTGTTCAAgcacgaaaaaaaaaacgtctGCGAA
GACGAATTTACTCTGTTCCTGGACCAGACCATCTCTGGCATATTGATGGA
TATGATAAACTAAAACCTTACGGTTTTAGTATTCATGGCTGCATAGATGG
CTTTTCTCGAAGATTGATTTGGCTAGAGGTTTGTCCATCAAATAAAAATC
CACGCGTCATTGCCAAATTCTTTATTGATGCAGCTAAACAACTAAGAGGC
ATTCCCTTGAGAATCAGATGCGATGATGGGACGGAGAATAGCATAATAGA
ACCAATACAAGTAGCGTTAAGGTCAGCTGATGATGACGAATTCAGTGGTG
AAGGAAGTTTTTTAATTGGAACCTCCCCAGCGAATCAAAGGATTGAATGC
TTTTGGTCCCAGTTTAATAAAGAACGTCCAATGTGGTGgaggattttttt
taaagatttgagcGATAATGGTTTACTTGATATTGCCGTTCCTGCAGTAG
CAGAATGTGTGCGTTACTGCTTCATGGATATTTTGAGGGCAGAGCTGACA
GATGTTGCCCTTCGTTGGAACCAACATATCATTTCACCCAGTCAAAATGT
ATCTCTTCCCAGAGGTCGTCCTGACTCCCTGTACTTTTTACCTCAGCTTT
ATGAGAGTCGCTCCTACAGAAAAGAAATTAATATCGATGAACTTTCTGTT
TTTGAGGACCCAGAAGTCATTATTCAACCAGAGGATAACAGTCCagaatt
tttggaatttgtttcCAAAGCGGTAGAACTGAAAGGAATAGAGAACTTTT
CAAAACCTAAAACAACAAAAGACGCATTAGaactatattttattttatta
gaaCTTATTCAGGAGTTTATGTAGATGCCTCTACCAAATTACATTCCTTG
TATTGTTGGGGGTGAAGAATCCAATAACAGAAAGTCTTTCATCGTACAAT
ACTTCAACCAAGGCtgttcaaattttgacattttgggTTTTTTATTGTTA
CATCATAACATACAAATCAGCTTGTCCACTCTTAAAAGAGATTTAGTTGC
ACTTGGCCTATCCAGGCGACATCTTGCGACTGCTGAAAACCCTAATGAAA
TTCGTCAGTTAATCGAAGAAGAATTGGCTGGAAGTGGTGTCAATTTGGGA
TATCGAAAAATCTGGAAGATTATCCAAAGCAAGGGCATTCCTGCAAAACG
TCAGACTGTTATGGAGATATTACGAGAGGTGGACCCAGAGGGTGTTCAAg
cacgaaaaaaaaaacgtctGCGAAGACGAATTTACTCTGTTCCTGGACCA
GACCATCTCTGGCATATTGATGGATATGATAAACTAAAACCTTACGGTTT
TAGTATTCATGGCTGCATAGATGGCTTTTCTCGAAGATTGATTTGGCTAG
AGGTTTGTCCATCAAATAAAAATCCACGCGTCATTGCCAAATTCTTTATT
GATGCAGCTAAACAACTAAGAGGCATTCCCTTGAGAATCAGATGCGATGA
TGGGACGGAGAATAGCATAATAGAACCAATACAAGTAGCGTTAAGGTCAG
CTGATGATGACGAATTCAGTGGTGAAGGAAGTTTTTTAATTGGAACCTCC
CCAGCGAATCAAAGGATTGAATGCTTTTGGTCCCAGTTTAATAAAGAACG
TCCAATGTGGTGgaggattttttttaaagatttgagcGATAATGGTTTAC
TTGATATTGCCGTTCCTGCAGTAGCAGAATGTGTGCGTTACTGCTTCATG
GATATTTTGAGGGCAGAGCTGACAGATGTTGCCCTTCGTTGGAACCAACA
TATCATTTCACCCAGTCAAAATGTATCTCTTCCCAGAGGTCGTCCTGACT
CCCTGTACTTTTTACCTCAGCTTTATGAGAGTCGCTCCTACAGAAAAGAA
ATTAATATCGATGAACTTTCTGTTTTTGAGGACCCAGAAGTCATTATTCA
ACCAGAGGATAACAGTCCagaatttttggaatttgtttcCAAAGCGGTAG
AACTGAAAGGAATAGAGAACTTTTCAAAACCTAAAACAACAAAAGACGCA
TTAGaactatattttattttattagaaCTTATTCAGGAGTTTATGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00029401-exon-sc0000747-1491911889:35150..35643 | TCONS_00029401-exon-sc0000747-1491911889:35150..35643 | Clytia hemisphaerica | exon |
| TCONS_00029401-exon-sc0000747-1510915933:35150..35643 | TCONS_00029401-exon-sc0000747-1510915933:35150..35643 | Clytia hemisphaerica | exon |
| TCONS_00029401-exon-sc0000747-1575043694:35150..35643 | TCONS_00029401-exon-sc0000747-1575043694:35150..35643 | Clytia hemisphaerica | exon |
| TCONS_00029401-exon-sc0000747-1491911889:37230..38214 | TCONS_00029401-exon-sc0000747-1491911889:37230..38214 | Clytia hemisphaerica | exon |
| TCONS_00029401-exon-sc0000747-1510915933:37230..38214 | TCONS_00029401-exon-sc0000747-1510915933:37230..38214 | Clytia hemisphaerica | exon |
| TCONS_00029401-exon-sc0000747-1575043694:37230..38214 | TCONS_00029401-exon-sc0000747-1575043694:37230..38214 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000747 | supercontig | sc0000747:35150..38214 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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