TCONS_00029396 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029396
Unique NameTCONS_00029396
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length573

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029396 ID=TCONS_00029396|Name=TCONS_00029396|organism=Clytia hemisphaerica|type=transcript|length=573bp
TGGTTAAGTCCTGTACGGGTGCCAAAAACCCCCGTAGCGCtgtttcttca
acttttcaggacttcggaccccttttttcggaatcttcACCCAAAAAAAC
TTAAAGTATAAAAACCTGGCGAAAAACTTTGACGTTGACCCGAACCCGAC
TTGAACTCGGGATCCCTAGTGCAAGAGCACAATGCGCTACCATTAGGCTA
ACTTCTATTGAAATAAATTGGAAATTTTAAGGGTCTTATCCCTTGGTCAG
ATAGACAAGACCTacgttaaaaatatttcaccctcaattttggcacttct
tAAGAATAATTGACCCTCTcgtccaaagtacactattcttataaaaaaaa
gcgtttaatTCTTAGAGCGTTTAGAAGATTTGACCAATTGTTTGTCGTAA
AACGGCTGATTCAATAACGCCAACACGCTTTATGATGAAATCATAATGAA
ATTATAGCGCATCCCGACGCACACATATCATTATAACCTGGTTGTCCGAG
AAtaaaatcggggaaaaaaatgtttgaaggtgggccaaagggtgggccaa
gggtaggccatatggcccgggcc
Run BLAST on NCBI

transcript from alignment at sc0000745:85725..86297

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029396 ID=TCONS_00029396|Name=TCONS_00029396|organism=Clytia hemisphaerica|type=transcript|length=573bp|location=Sequence derived from alignment at sc0000745:85725..86297 (Clytia hemisphaerica)
ggcccgggccatatggcctacccttggcccaccctttggcccaccttcaa
acatttttttccccgattttaTTCTCGGACAACCAGGTTATAATGATATG
TGTGCGTCGGGATGCGCTATAATTTCATTATGATTTCATCATAAAGCGTG
TTGGCGTTATTGAATCAGCCGTTTTACGACAAACAATTGGTCAAATCTTC
TAAACGCTCTAAGAattaaacgcttttttttataagaatagtgtactttg
gacgAGAGGGTCAATTATTCTTaagaagtgccaaaattgagggtgaaata
tttttaacgtAGGTCTTGTCTATCTGACCAAGGGATAAGACCCTTAAAAT
TTCCAATTTATTTCAATAGAAGTTAGCCTAATGGTAGCGCATTGTGCTCT
TGCACTAGGGATCCCGAGTTCAAGTCGGGTTCGGGTCAACGTCAAAGTTT
TTCGCCAGGTTTTTATACTTTAAGTTTTTTTGGGTgaagattccgaaaaa
aggggtccgaagtcctgaaaagttgaagaaacaGCGCTACGGGGGTTTTT
GGCACCCGTACAGGACTTAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016770XLOC_016770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029396-exon-sc0000745-1491911889:85725..86297TCONS_00029396-exon-sc0000745-1491911889:85725..86297Clytia hemisphaericaexon
TCONS_00029396-exon-sc0000745-1510915933:85725..86297TCONS_00029396-exon-sc0000745-1510915933:85725..86297Clytia hemisphaericaexon
TCONS_00029396-exon-sc0000745-1575043694:85725..86297TCONS_00029396-exon-sc0000745-1575043694:85725..86297Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000745supercontigsc0000745:85725..86297 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.316087	0.488151	1.27652	0.863732	3.15453	3.50536	4.00987	8.29478	3.53172	2.08839	2.26306	2.43009	2.39041	2.82649	0.940858	0.798759	0.585341	0.524961	0	0.975773	0.806106	2.02272	0.820975	0.529683	3.11616	5.97718	1.33646	1.14104	2.64183	1.66737
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029396 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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