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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00029385 ID=TCONS_00029385|Name=TCONS_00029385|organism=Clytia hemisphaerica|type=transcript|length=3743bpRun BLAST on NCBI transcript from alignment at sc0000745:123..25345+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00029385 ID=TCONS_00029385|Name=TCONS_00029385|organism=Clytia hemisphaerica|type=transcript|length=25223bp|location=Sequence derived from alignment at sc0000745:123..25345+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00029385 vs. Swiss-Prot (Human)
Match: DCR1C (Protein artemis OS=Homo sapiens GN=DCLRE1C PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 4.856e-31 Identity = 59/168 (35.12%), Postives = 89/168 (52.98%), Query Frame = 2
Query: 305 FLVTLSQDHIEGLLAIDFIEVLRNRRTVKLYTSETTKNLMSCDDEMVHLLEFTIGLPIHQQ-QVLTVKDHQNKGQNLVVTLLSAGHCVGSVMFLIEGSGGKVLYTGDFRLGEKEISKIP-----TSFCNVKSVYVDTTFCCPLVPDFPTRVDTTEAIISIIKSNFTAT 790
FL +DH++GL A L V LY S TK L+ + + I + I Q+ V + + + +VVTLL AGHC GSVMFL +G+ G VLYTGDFRL + E +++ +++SVY+DTTFC P P+R + ++ +++S T +
Sbjct: 30 FLSHCHKDHMKGLRAPTLKRRLECSLKVYLYCSPVTKELLLTSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGTVLYTGDFRLAQGEAARMELLHSGGRVKDIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRS 197 HSP 2 Score: 55.4546 bits (132), Expect = 4.856e-31 Identity = 23/36 (63.89%), Postives = 28/36 (77.78%), Query Frame = 3
Query: 219 MSTFNGKLLEYPFASIDRFDGENLASTIFFLSHCHK 326
MS+F G++ EYP SIDRFD ENL + +FLSHCHK
Sbjct: 1 MSSFEGQMAEYPTISIDRFDRENLRARAYFLSHCHK 36 The following BLAST results are available for this feature:
BLAST of TCONS_00029385 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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