TCONS_00029377 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029377
Unique NameTCONS_00029377
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029377 ID=TCONS_00029377|Name=TCONS_00029377|organism=Clytia hemisphaerica|type=transcript|length=828bp
NtgcttccgtataaaagattacgtcatgaatatcatgaatatgcaTGTCA
GGATGATAGCGGAACAGGAAtataatccatcaaaaatgaatttaaaacat
tCCATTCCCAATTTAGTTCAAGAAATGTCGTTTGATGTTTGAGCTCTGAT
TTTGGGAAGAAGCACGTCAAATTATCAATATTATTGACcgattcataatt
ttgataacaaaaatcacATGGTCTTGAGAAGTCTGTTTACAATCTCTTTG
ATATCGGAACTATTTGACAGGTTCAGTATCATATGCaatcaattcaacaa
ttttgtctttgttggtcACTTGATAGCCCTATCATATGCTTCTGCTGCTG
TTGTATTTTGCAGGCCATGGGTCATGCTGTATCATGATGATGggacaaaa
taaaatcctccaAAAATTCCTCACAACAAGATTTAAAGCAAATCATTCCC
ATAACTTTTGAGTTTCTACAATGACAATATTCATTCTCTCCCTTGTATAA
ATTTCGTCTTATGACTGTTCGTTTTTCTTGAGGTAGAAATAAATCCAGAC
AAACATGCCCCTCTCAGGACTCAGCTGCttgcaaagttttccaagtttgt
tttctCTCTGTCTTCCTTTTCATCATAATCACAACAGTTTACAAAACATC
AAACTGACACTGATAAAAATCCATTAACGTATTCTCAGGGTCAACAGAAG
TCTATTTTCAATCCAATTTAATCGTCAAAACTCCATAAAACTGCATGAAG
AGCACAAATGTTTAAAAACCACTGTAAACAGTTTTTCGTGTCTCACATTC
TAGACAGGTCTGTTCATAACAAAAAATN
Run BLAST on NCBI

transcript from alignment at sc0000744:59028..59855

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029377 ID=TCONS_00029377|Name=TCONS_00029377|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at sc0000744:59028..59855 (Clytia hemisphaerica)
NATTTTTTGTTATGAACAGACCTGTCTAGAATGTGAGACACGAAAAACTG
TTTACAGTGGTTTTTAAACATTTGTGCTCTTCATGCAGTTTTATGGAGTT
TTGACGATTAAATTGGATTGAAAATAGACTTCTGTTGACCCTGAGAATAC
GTTAATGGATTTTTATCAGTGTCAGTTTGATGTTTTGTAAACTGTTGTGA
TTATGATGAAAAGGAAGACAGAGagaaaacaaacttggaaaactttgcaa
GCAGCTGAGTCCTGAGAGGGGCATGTTTGTCTGGATTTATTTCTACCTCA
AGAAAAACGAACAGTCATAAGACGAAATTTATACAAGGGAGAGAATGAAT
ATTGTCATTGTAGAAACTCAAAAGTTATGGGAATGATTTGCTTTAAATCT
TGTTGTGAGGAATTTTtggaggattttattttgtccCATCATCATGATAC
AGCATGACCCATGGCCTGCAAAATACAACAGCAGCAGAAGCATATGATAG
GGCTATCAAGTgaccaacaaagacaaaattgttgaattgattGCATATGA
TACTGAACCTGTCAAATAGTTCCGATATCAAAGAGATTGTAAACAGACTT
CTCAAGACCATgtgatttttgttatcaaaattatgaatcgGTCAATAATA
TTGATAATTTGACGTGCTTCTTCCCAAAATCAGAGCTCAAACATCAAACG
ACATTTCTTGAACTAAATTGGGAATGGaatgttttaaattcatttttgat
ggattataTTCCTGTTCCGCTATCATCCTGACAtgcatattcatgatatt
catgacgtaatcttttatacggaagcaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016753XLOC_016753Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029377-exon-sc0000744-1491911889:59028..59855TCONS_00029377-exon-sc0000744-1491911889:59028..59855Clytia hemisphaericaexon
TCONS_00029377-exon-sc0000744-1510915933:59028..59855TCONS_00029377-exon-sc0000744-1510915933:59028..59855Clytia hemisphaericaexon
TCONS_00029377-exon-sc0000744-1575043694:59028..59855TCONS_00029377-exon-sc0000744-1575043694:59028..59855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:59028..59855 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.51824	3.04933	1.58937	1.01499	16.159	10.6804	8.0112	8.73951	5.79445	6.46822	6.56964	6.67171	5.47234	5.57011	2.35975	2.95204	2.73145	2.63615	3.77311	5.70494	4.31906	5.52751	9.22897	7.7251	7.12073	10.4868	6.75298	6.58285	6.85385	7.4183
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029377 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top