TCONS_00029375 (transcript) - C. hemisphaerica

Overview
NameTCONS_00029375
Unique NameTCONS_00029375
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length870

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00029375 ID=TCONS_00029375|Name=TCONS_00029375|organism=Clytia hemisphaerica|type=transcript|length=870bp
AACCCAAACATTTCTTCGAGCTTCTCAATTCCTTTGCTACAGTTTCAAAT
ATTATGTTTATtgtgtcttttctttttcttcgatACAAACCAAGGTTTCT
AAGTATACGATGAAGGGTTCTTATAGTTATCTGAATGCCTTGTTTATCCT
CTAGCGTCCATAACATCTCCTGATATGAGTAGTTTTGTAGGAACATACGT
TTGATCTCATCCTCTCTTCTGTCCATCTTGGAATCTATGAAAATTTGTTC
ACATTGTTTTTGTTGATGAATATCCATTCTACGCATGCTGATTTGCTTCT
TTGCGCATGCTCAGGTATTTCATTGCGCATGCTCAACTTCTTTCTAACAA
GCTAACTGGCGAATCGCCACTTAATAGTTTCCGAATCGCCACTTAATAAT
GTGCTAACTGGCGAATCGCCACTTAATAATTTGCTAAGTGGCGAATCGCC
ACTTAATAATTTGCTAAGTGGCGAATCGCCACTTAATACTTTGCTAAGTG
GCGAATCGCCCTGGCTAAGTGGCGAATCGccgctttttaaattttcatta
aaaaacacgTCTAAAATGTCATATATGGGCCACGGTAAAAAGTAGATCAA
AAATAGATCTTTTGCTTTGTTTCATTTTTGAGCGGTGTCAAATCAGAAGC
TAAAAGCGGAAAGTCCAGATTTCACATGTAAATATATGACTCCCGTACTC
CTATGTTCTGTCTTTGAATGCAAATGTGTGAAATTGACTATAGGTAAACT
AGAAATAATGCAAATCTTTTTGACAGATACTTAATCATATTATGAAATcg
atttttgtaaatttatatTATTAGTACGACATAATATTagttttaaagaa
ataaaaaattttctccatcc
Run BLAST on NCBI

transcript from alignment at sc0000744:29621..30490

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00029375 ID=TCONS_00029375|Name=TCONS_00029375|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0000744:29621..30490 (Clytia hemisphaerica)
ggatggagaaaattttttatttctttaaaactAATATTATGTCGTACTAA
TAatataaatttacaaaaatcgATTTCATAATATGATTAAGTATCTGTCA
AAAAGATTTGCATTATTTCTAGTTTACCTATAGTCAATTTCACACATTTG
CATTCAAAGACAGAACATAGGAGTACGGGAGTCATATATTTACATGTGAA
ATCTGGACTTTCCGCTTTTAGCTTCTGATTTGACACCGCTCAAAAATGAA
ACAAAGCAAAAGATCTATTTTTGATCTACTTTTTACCGTGGCCCATATAT
GACATTTTAGAcgtgttttttaatgaaaatttaaaaagcggCGATTCGCC
ACTTAGCCAGGGCGATTCGCCACTTAGCAAAGTATTAAGTGGCGATTCGC
CACTTAGCAAATTATTAAGTGGCGATTCGCCACTTAGCAAATTATTAAGT
GGCGATTCGCCAGTTAGCACATTATTAAGTGGCGATTCGGAAACTATTAA
GTGGCGATTCGCCAGTTAGCTTGTTAGAAAGAAGTTGAGCATGCGCAATG
AAATACCTGAGCATGCGCAAAGAAGCAAATCAGCATGCGTAGAATGGATA
TTCATCAACAAAAACAATGTGAACAAATTTTCATAGATTCCAAGATGGAC
AGAAGAGAGGATGAGATCAAACGTATGTTCCTACAAAACTACTCATATCA
GGAGATGTTATGGACGCTAGAGGATAAACAAGGCATTCAGATAACTATAA
GAACCCTTCATCGTATACTTAGAAACCTTGGTTTGTatcgaagaaaaaga
aaagacacaATAAACATAATATTTGAAACTGTAGCAAAGGAATTGAGAAG
CTCGAAGAAATGTTTGGGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_016751XLOC_016751Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00029375-exon-sc0000744-1491911889:29621..30490TCONS_00029375-exon-sc0000744-1491911889:29621..30490Clytia hemisphaericaexon
TCONS_00029375-exon-sc0000744-1510915933:29621..30490TCONS_00029375-exon-sc0000744-1510915933:29621..30490Clytia hemisphaericaexon
TCONS_00029375-exon-sc0000744-1575043694:29621..30490TCONS_00029375-exon-sc0000744-1575043694:29621..30490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000744supercontigsc0000744:29621..30490 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.71753	1.46551	1.33696	0.951281	12.9117	7.6643	10.4197	11.4345	2.98512	3.92164	3.60266	2.46646	2.50939	3.55879	1.35062	1.37368	0.967008	1.11505	0.855831	0.238818	3.21742	2.6815	1.60005	1.69512	5.0711	8.0745	3.45902	3.40756	1.3106	1.94224
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00029375 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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